def high_throughput_curation(request):
"""Entry point for high-throughput curation.
Curators can check ChIP and other high-throughput methodologies in the
regular submission mode, but if they are submitting data that is primarily
based on high-throughput binding assays (e.g. ChIP-seq genomic-SELEX, etc.)
they are then encouraged to use the high-throughput submission
portal. First few steps are identical to the ones in the regular submission
portal. In the site-entry step, two types of data are asked: sites and
peaks. As in regular submission portal, sites can be either
motif-associated, non-motif-associated or variable-motif-associated
(e.g. variable spacing, inverting, anything that is not gapless alignment),
which can be entered in sequence-based or coordinate-based modes. Below the
site box, curators are able to enter peak data (most likely in coordinate
mode).
"""
# This IS high-throughput submission
session_utils.put(request.session, 'high_throughput_curation', True)
view = CurationWizard.as_view(
[PublicationForm,
GenomeForm,
TechniquesForm,
SiteEntryForm,
SiteExactMatchForm,
SiteSoftMatchForm,
SiteAnnotationForm,
GeneRegulationForm,
CurationReviewForm],
condition_dict={'5': inexact_match_form_condition})
return view(request)
def high_throughput_curation(request):
"""Entry point for high-throughput curation.
Curators can check ChIP and other high-throughput methodologies in the
regular submission mode, but if they are submitting data that is primarily
based on high-throughput binding assays (e.g. ChIP-seq genomic-SELEX, etc.)
they are then encouraged to use the high-throughput submission
portal. First few steps are identical to the ones in the regular submission
portal. In the site-entry step, two types of data are asked: sites and
peaks. As in regular submission portal, sites can be either
motif-associated, non-motif-associated or variable-motif-associated
(e.g. variable spacing, inverting, anything that is not gapless alignment),
which can be entered in sequence-based or coordinate-based modes. Below the
site box, curators are able to enter peak data (most likely in coordinate
mode).
"""
# This IS high-throughput submission
session_utils.put(request.session, 'high_throughput_curation', True)
view = CurationWizard.as_view(
[
PublicationForm, GenomeForm, TechniquesForm, SiteEntryForm,
SiteExactMatchForm, SiteSoftMatchForm, SiteAnnotationForm,
GeneRegulationForm, CurationReviewForm
],
condition_dict={'5': inexact_match_form_condition})
return view(request)
def curation(request):
"""Entry point for the curation."""
session_utils.remove(request.session, 'previous_curation')
# This is not high-throughput submission.
session_utils.put(request.session, 'high_throughput_curation', False)
view = CurationWizard.as_view(
[
PublicationForm, GenomeForm, TechniquesForm, SiteEntryForm,
SiteExactMatchForm, SiteSoftMatchForm, SiteAnnotationForm,
GeneRegulationForm, CurationReviewForm
],
condition_dict={'5': inexact_match_form_condition})
return view(request)
def curation(request):
"""Entry point for the curation."""
session_utils.remove(request.session, 'previous_curation')
# This is not high-throughput submission.
session_utils.put(request.session, 'high_throughput_curation', False)
view = CurationWizard.as_view(
[PublicationForm,
GenomeForm,
TechniquesForm,
SiteEntryForm,
SiteExactMatchForm,
SiteSoftMatchForm,
SiteAnnotationForm,
GeneRegulationForm,
CurationReviewForm],
condition_dict={'5': inexact_match_form_condition})
return view(request)
