def get_year_groups(query_pmids, years):
if VERBOSE:
print "filter_pmids for %s" %query_pmids
if not query_pmids:
return([])
(client, the_post) = get_history_client_post(pmids)
flags = {}
for year in years:
pubmed_filter_string = "1[PDAT]:%d/12/31[PDAT]" %(year)
try:
time.sleep(1/3)
filtered_pmid_records = the_post.search(
'#%s AND (%s)' %(the_post.query_key, pubmed_filter_string),
db="pubmed")
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
pmid_passes_filter = [(pmid in filtered_pmids) for pmid in query_pmids]
flags[year] = _map_booleans_to_flags(pmid_passes_filter)
def get_year_groups(query_pmids, years):
if VERBOSE:
print "filter_pmids for %s" % query_pmids
if not query_pmids:
return ([])
(client, the_post) = get_history_client_post(pmids)
flags = {}
for year in years:
pubmed_filter_string = "1[PDAT]:%d/12/31[PDAT]" % (year)
try:
time.sleep(1 / 3)
filtered_pmid_records = the_post.search(
'#%s AND (%s)' % (the_post.query_key, pubmed_filter_string),
db="pubmed")
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
pmid_passes_filter = [(pmid in filtered_pmids) for pmid in query_pmids]
flags[year] = _map_booleans_to_flags(pmid_passes_filter)
def search(pubmed_filter_string):
if VERBOSE:
print "filter_pmids for %s" %pubmed_filter_string
try:
entrez = get_eutils_history_client()
filtered_pmid_records = entrez.search(pubmed_filter_string, db="pubmed")
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
def search(pubmed_filter_string):
if VERBOSE:
print "filter_pmids for %s" % pubmed_filter_string
try:
time.sleep(1 / 3)
entrez = get_eutils_history_client()
filtered_pmid_records = entrez.search(pubmed_filter_string,
db="pubmed")
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
def filter_pmids(query_pmids, pubmed_filter_string):
if VERBOSE:
print "filter_pmids for %s" %query_pmids
if not query_pmids:
return([])
try:
(client, the_post) = get_history_client_post(query_pmids)
filtered_pmid_records = client.search(
'#%s AND (%s)' %(the_post.query_key, pubmed_filter_string),
db="pubmed")
print len(filtered_pmid_records)
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
def filter_pmids(query_pmids, pubmed_filter_string):
print "filter_pmids for %s" % query_pmids
if VERBOSE:
print "filter_pmids for %s" % query_pmids
if not query_pmids:
return ([])
try:
time.sleep(1 / 3)
(client, the_post) = get_history_client_post(query_pmids)
filtered_pmid_records = client.search(
'#%s AND (%s)' % (the_post.query_key, pubmed_filter_string),
db="pubmed")
print len(filtered_pmid_records)
filtered_pmids = filtered_pmid_records.dbids.ids
except AttributeError:
filtered_pmids = []
except EUtils.EUtilsError, e:
if e.args[0].strip() == "Empty result - nothing todo":
filtered_pmids = []
else:
raise datasourcesError(e)
