def summary(self, block_size, block_size_units):
''' Print a summary of the integration stuff. '''
from libtbx.table_utils import format as table
from dials.util.command_line import heading
from logging import info
# Compute the task table
if self._experiments.all_stills():
rows = [["#", "Group", "Frame From", "Frame To"]]
for i in range(len(self)):
job = self._manager.job(i)
group = job.index()
f0, f1 = job.frames()
rows.append([str(i), str(group), str(f0), str(f1)])
elif self._experiments.all_sweeps():
rows = [["#", "Group", "Frame From", "Frame To", "Angle From", "Angle To"]]
for i in range(len(self)):
job = self._manager.job(i)
group = job.index()
expr = job.expr()
f0, f1 = job.frames()
scan = self._experiments[expr[0]].scan
p0 = scan.get_angle_from_array_index(f0)
p1 = scan.get_angle_from_array_index(f1)
rows.append([str(i), str(group), str(f0), str(f1), str(p0), str(p1)])
else:
raise RuntimeError('Experiments must be all sweeps or all stills')
task_table = table(rows, has_header=True, justify="right", prefix=" ")
def summary(self):
"""
Get a summary of the processing
"""
# Compute the task table
if self.experiments.all_stills():
rows = [["#", "Group", "Frame From", "Frame To", "# Reflections"]]
for i in range(len(self)):
job = self.manager.job(i)
group = job.index()
f0, f1 = job.frames()
n = self.manager.num_reflections(i)
rows.append([str(i), str(group), str(f0), str(f1), str(n)])
elif self.experiments.all_sequences():
rows = [[
"#",
"Frame From",
"Frame To",
"Angle From",
"Angle To",
"# Reflections",
]]
for i in range(len(self)):
f0, f1 = self.manager.job(i)
scan = self.experiments[0].scan
p0 = scan.get_angle_from_array_index(f0)
p1 = scan.get_angle_from_array_index(f1)
n = self.manager.num_reflections(i)
rows.append(
[str(i),
str(f0),
str(f1),
str(p0),
str(p1),
str(n)])
else:
raise RuntimeError(
"Experiments must be all sequences or all stills")
# The job table
task_table = libtbx.table_utils.format(rows,
has_header=True,
justify="right",
prefix=" ")
# The format string
if self.params.integration.block.size is None:
block_size = "auto"
else:
block_size = str(self.params.integration.block.size)
fmt = ("Processing reflections in the following blocks of images:\n"
"\n"
" block_size: %s %s\n"
"\n"
"%s\n")
return fmt % (block_size, self.params.integration.block.units,
task_table)
def summary(self, block_size, block_size_units):
''' Print a summary of the integration stuff. '''
from libtbx.table_utils import format as table
from dials.util.command_line import heading
# Compute the task table
if self._experiments.all_stills():
rows = [["#", "Group", "Frame From", "Frame To"]]
for i in range(len(self)):
job = self._manager.job(i)
group = job.index()
f0, f1 = job.frames()
rows.append([str(i), str(group), str(f0), str(f1)])
elif self._experiments.all_sweeps():
rows = [[
"#", "Group", "Frame From", "Frame To", "Angle From",
"Angle To"
]]
for i in range(len(self)):
job = self._manager.job(i)
group = job.index()
expr = job.expr()
f0, f1 = job.frames()
scan = self._experiments[expr[0]].scan
p0 = scan.get_angle_from_array_index(f0)
p1 = scan.get_angle_from_array_index(f1)
rows.append(
[str(i),
str(group),
str(f0),
str(f1),
str(p0),
str(p1)])
else:
raise RuntimeError('Experiments must be all sweeps or all stills')
task_table = table(rows, has_header=True, justify="right", prefix=" ")
