def summary(self, block_size, block_size_units): ''' Print a summary of the integration stuff. ''' from libtbx.table_utils import format as table from dials.util.command_line import heading from logging import info # Compute the task table if self._experiments.all_stills(): rows = [["#", "Group", "Frame From", "Frame To"]] for i in range(len(self)): job = self._manager.job(i) group = job.index() f0, f1 = job.frames() rows.append([str(i), str(group), str(f0), str(f1)]) elif self._experiments.all_sweeps(): rows = [["#", "Group", "Frame From", "Frame To", "Angle From", "Angle To"]] for i in range(len(self)): job = self._manager.job(i) group = job.index() expr = job.expr() f0, f1 = job.frames() scan = self._experiments[expr[0]].scan p0 = scan.get_angle_from_array_index(f0) p1 = scan.get_angle_from_array_index(f1) rows.append([str(i), str(group), str(f0), str(f1), str(p0), str(p1)]) else: raise RuntimeError('Experiments must be all sweeps or all stills') task_table = table(rows, has_header=True, justify="right", prefix=" ")
def summary(self): """ Get a summary of the processing """ # Compute the task table if self.experiments.all_stills(): rows = [["#", "Group", "Frame From", "Frame To", "# Reflections"]] for i in range(len(self)): job = self.manager.job(i) group = job.index() f0, f1 = job.frames() n = self.manager.num_reflections(i) rows.append([str(i), str(group), str(f0), str(f1), str(n)]) elif self.experiments.all_sequences(): rows = [[ "#", "Frame From", "Frame To", "Angle From", "Angle To", "# Reflections", ]] for i in range(len(self)): f0, f1 = self.manager.job(i) scan = self.experiments[0].scan p0 = scan.get_angle_from_array_index(f0) p1 = scan.get_angle_from_array_index(f1) n = self.manager.num_reflections(i) rows.append( [str(i), str(f0), str(f1), str(p0), str(p1), str(n)]) else: raise RuntimeError( "Experiments must be all sequences or all stills") # The job table task_table = libtbx.table_utils.format(rows, has_header=True, justify="right", prefix=" ") # The format string if self.params.integration.block.size is None: block_size = "auto" else: block_size = str(self.params.integration.block.size) fmt = ("Processing reflections in the following blocks of images:\n" "\n" " block_size: %s %s\n" "\n" "%s\n") return fmt % (block_size, self.params.integration.block.units, task_table)
def summary(self, block_size, block_size_units): ''' Print a summary of the integration stuff. ''' from libtbx.table_utils import format as table from dials.util.command_line import heading # Compute the task table if self._experiments.all_stills(): rows = [["#", "Group", "Frame From", "Frame To"]] for i in range(len(self)): job = self._manager.job(i) group = job.index() f0, f1 = job.frames() rows.append([str(i), str(group), str(f0), str(f1)]) elif self._experiments.all_sweeps(): rows = [[ "#", "Group", "Frame From", "Frame To", "Angle From", "Angle To" ]] for i in range(len(self)): job = self._manager.job(i) group = job.index() expr = job.expr() f0, f1 = job.frames() scan = self._experiments[expr[0]].scan p0 = scan.get_angle_from_array_index(f0) p1 = scan.get_angle_from_array_index(f1) rows.append( [str(i), str(group), str(f0), str(f1), str(p0), str(p1)]) else: raise RuntimeError('Experiments must be all sweeps or all stills') task_table = table(rows, has_header=True, justify="right", prefix=" ")