def calcRadialDiskDensity():
yng = young.loadAllYoungStars('./')
r2d = yng.getArray('r2d')
names = yng.getArray('name')
sidx = r2d.argsort()
r2d = r2d[sidx]
names = [names[ss] for ss in sidx]
halfway = len(r2d) / 2
names_inner = names[0:halfway]
names_outer = names[halfway:]
# copy over the *.mc.dat files
for name in names_inner:
if not os.path.exists('aorb_efit_all_inner/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_inner/%s.mc.dat' % name)
for name in names_outer:
if not os.path.exists('aorb_efit_all_outer/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_outer/%s.mc.dat' % name)
#diski = aorb.Disk('./', 'aorb_efit_all_inner/')
#diski.names = names_inner
#diski.run(makeplot=True)
disko = aorb.Disk('./', 'aorb_efit_all_outer/')
disko.names = names_outer
disko.run(makeplot=True)
def calcRadialDiskDensity():
yng = young.loadAllYoungStars('./')
r2d = yng.getArray('r2d')
names = yng.getArray('name')
sidx = r2d.argsort()
r2d = r2d[sidx]
names = [names[ss] for ss in sidx]
halfway = len(r2d) / 2
names_inner = names[0:halfway]
names_outer = names[halfway:]
# copy over the *.mc.dat files
for name in names_inner:
if not os.path.exists('aorb_efit_all_inner/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_inner/%s.mc.dat' % name)
for name in names_outer:
if not os.path.exists('aorb_efit_all_outer/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_outer/%s.mc.dat' % name)
#diski = aorb.Disk('./', 'aorb_efit_all_inner/')
#diski.names = names_inner
#diski.run(makeplot=True)
disko = aorb.Disk('./', 'aorb_efit_all_outer/')
disko.names = names_outer
disko.run(makeplot=True)
def calcRadialDiskDensity3():
yng = young.loadAllYoungStars('./')
r2d = yng.getArray('r2d')
names = yng.getArray('name')
sidx = r2d.argsort()
r2d = r2d[sidx]
names = [names[ss] for ss in sidx]
cut1 = 3.5
cut2 = 7.0
names1 = []
names2 = []
names3 = []
for rr in range(len(r2d)):
if (r2d[rr] <= cut1):
names1.append(names[rr])
if ((r2d[rr] > cut1) & (r2d[rr] <= cut2)):
names2.append(names[rr])
if (r2d[rr] > cut2):
names3.append(names[rr])
# copy over the *.mc.dat files
for name in names1:
if not os.path.exists('aorb_efit_all_r1/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r1/%s.mc.dat' % name)
for name in names2:
if not os.path.exists('aorb_efit_all_r2/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r2/%s.mc.dat' % name)
for name in names3:
if not os.path.exists('aorb_efit_all_r3/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r3/%s.mc.dat' % name)
disk1 = aorb.Disk('./', 'aorb_efit_all_r1/')
disk1.names = names1
disk1.run(makeplot=True)
disk2 = aorb.Disk('./', 'aorb_efit_all_r2/')
disk2.names = names2
disk2.run(makeplot=True)
disk3 = aorb.Disk('./', 'aorb_efit_all_r3/')
disk3.names = names3
disk3.run(makeplot=True)
def calcRadialDiskDensity3():
yng = young.loadAllYoungStars('./')
r2d = yng.getArray('r2d')
names = yng.getArray('name')
sidx = r2d.argsort()
r2d = r2d[sidx]
names = [names[ss] for ss in sidx]
cut1 = 3.5
cut2 = 7.0
names1 = []
names2 = []
names3 = []
for rr in range(len(r2d)):
if (r2d[rr] <= cut1):
names1.append(names[rr])
if ((r2d[rr] > cut1) & (r2d[rr] <= cut2)):
names2.append(names[rr])
if (r2d[rr] > cut2):
names3.append(names[rr])
# copy over the *.mc.dat files
for name in names1:
if not os.path.exists('aorb_efit_all_r1/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r1/%s.mc.dat' % name)
for name in names2:
if not os.path.exists('aorb_efit_all_r2/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r2/%s.mc.dat' % name)
for name in names3:
if not os.path.exists('aorb_efit_all_r3/%s.mc.dat' % name):
shutil.copy('aorb_efit_all/%s.mc.dat' % name,
'aorb_efit_all_r3/%s.mc.dat' % name)
disk1 = aorb.Disk('./', 'aorb_efit_all_r1/')
disk1.names = names1
disk1.run(makeplot=True)
disk2 = aorb.Disk('./', 'aorb_efit_all_r2/')
disk2.names = names2
disk2.run(makeplot=True)
disk3 = aorb.Disk('./', 'aorb_efit_all_r3/')
disk3.names = names3
disk3.run(makeplot=True)
def generateData(root, outdir, N=10**7):
"""
Remember to calculate at least 2 times more stars than you want
because many are dropped from our observing window.
"""
cc = objects.Constants()
yng = young.loadAllYoungStars(root)
names = yng.getArray('name')
# Get out the distributions we will need for our simulation.
# Each relevant parameter will be plotted as a function of
# radius, divided into the following radial bins:
# BIN #1: r = 0.8" - 2.5"
# BIN #2: r = 2.5" - 3.5"
# BIN #3: r = 3.5" - 7.0"
# BIN #4: r = 7.0" - 13.5"
binsIn = np.array([0.8, 2.5, 3.5, 7.0, 13.5])
colors = ['red', 'orange', 'green', 'blue']
legend = ['0.8"-2.5"', '2.5"-3.5"', '3.5"-7.0"', '7.0"-13.5"']
r2d = yng.getArray('r2d')
py.figure(1)
py.clf()
py.hist(r2d, bins=binsIn, histtype='step', linewidth=2)
py.xlabel('Projected Radius (arcsec)')
py.ylabel('Number of Stars Observed')
py.savefig(outdir + 'hist_r2d_obs.png')
binCnt = len(binsIn) - 1
ridx = []
for bb in range(binCnt):
idx = np.where((r2d >= binsIn[bb]) & (r2d < binsIn[bb + 1]))[0]
ridx.append(idx)
##########
#
# For each star we will use error distributions from the
# data itself. Set these up.
#
##########
# Positional Uncertainties in arcsec
xerrDist, yerrDist = distPositionalError(yng, binsIn)
# Proper motion uncertainties in arcsec/yr
vxerrDist, vyerrDist = distProperMotionError(yng, binsIn, r2d, ridx,
colors, legend, outdir)
# Radial velocity uncertainties in km/s
vzerrDist = distRadialVelocityError(yng, binsIn, r2d, ridx, colors, legend,
outdir)
# Acceleration uncertainties in arcsec/yr^2
axerrDist, ayerrDist = distAccelerationError(yng, binsIn, r2d, colors,
legend, outdir)
# We will need a random number distribution for each of these.
# These are all 0-1, but we will convert them into indices into
# the above distributions later on when we know the radius of each
# of the simulated stars.
xerrRand = scipy.rand(N)
yerrRand = scipy.rand(N)
vxerrRand = scipy.rand(N)
vyerrRand = scipy.rand(N)
vzerrRand = scipy.rand(N)
axerrRand = scipy.rand(N)
ayerrRand = scipy.rand(N)
##########
#
# Generate simulated stars' orbital parameters
#
##########
# Inclination and Omega (degrees)
i, o = distNormalVector(N, outdir)
# Angle to the ascending node (degrees)
w = scipy.rand(N) * 360.0
# Semi-major axis (pc) and period (years)
a, p = distSemimajorAxisPeriod(N, outdir)
# Eccentricity
e = scipy.stats.powerlaw.rvs(2, 0, size=N)
# Lets correct the eccentricities just to prevent the
# infinite loops.
edx = np.where(e > 0.98)[0]
e[edx] = 0.98
# Time of Periapse (yr)
t0 = scipy.rand(N) * p
##########
#
# Determine x, y, vx, vy, vz, ax, ay
# Assign errors accordingly.
# Record star to file IF it falls within our projected
# observing window.
#
##########
x = np.zeros(N, dtype=np.float32)
y = np.zeros(N, dtype=np.float32)
vx = np.zeros(N, dtype=np.float32)
vy = np.zeros(N, dtype=np.float32)
vz = np.zeros(N, dtype=np.float32)
ax = np.zeros(N, dtype=np.float32)
ay = np.zeros(N, dtype=np.float32)
xerr = np.zeros(N, dtype=np.float32)
yerr = np.zeros(N, dtype=np.float32)
vxerr = np.zeros(N, dtype=np.float32)
vyerr = np.zeros(N, dtype=np.float32)
vzerr = np.zeros(N, dtype=np.float32)
axerr = np.zeros(N, dtype=np.float32)
ayerr = np.zeros(N, dtype=np.float32)
skipped = np.zeros(N, dtype=np.int16)
for nn in range(N):
if (((nn % 10**4) == 0)):
print 'Simulated Star %d: ' % nn, time.ctime(time.time())
orb = orbits.Orbit()
orb.w = w[nn]
orb.o = o[nn]
orb.i = i[nn]
orb.e = e[nn]
orb.p = p[nn]
orb.t0 = t0[nn]
# Remember r (arcsec), v (mas/yr), a (mas/yr^2)
(pos, vel, acc) = orb.kep2xyz(np.array([0.0]), mass=4.0e6, dist=8.0e3)
pos = pos[0] # in arcsec
vel = vel[0] / 10**3 # convert to arcsec/yr
acc = acc[0] / 10**3 # convert to arcsec/yr^2
r2d = math.sqrt(pos[0]**2 + pos[1]**2)
# Impose our observing limits
if (r2d < binsIn[0]) or (r2d > binsIn[-1]):
skipped[nn] = 1
continue
tmp = np.where(binsIn > r2d)[0]
errIdx = tmp[0] - 1
# Set noisey positions
xerr[nn] = xerrDist[errIdx]
yerr[nn] = yerrDist[errIdx]
x[nn] = np.random.normal(pos[0], xerr[nn])
y[nn] = np.random.normal(pos[1], yerr[nn])
# Set noisy velocities
errCnt = len(vxerrDist)
vxerr[nn] = vxerrDist[errIdx][int(math.floor(vxerrRand[nn] * errCnt))]
vyerr[nn] = vyerrDist[errIdx][int(math.floor(vyerrRand[nn] * errCnt))]
vzerr[nn] = vzerrDist[errIdx][int(math.floor(vzerrRand[nn] * errCnt))]
# Convert radial velocity into km/s
vel[2] *= 8.0 * cc.cm_in_au / (1e5 * cc.sec_in_yr)
vx[nn] = np.random.normal(vel[0], vxerr[nn])
vy[nn] = np.random.normal(vel[1], vyerr[nn])
vz[nn] = np.random.normal(vel[2], vzerr[nn])
# Set noisy accelerations ONLY for close in stars
if (errIdx <= 1):
# Close in stars have acceleration constraints
axerr[nn] = axerrDist[errIdx][int(
math.floor(axerrRand[nn] * errCnt))]
ayerr[nn] = ayerrDist[errIdx][int(
math.floor(ayerrRand[nn] * errCnt))]
ax[nn] = np.random.normal(acc[0], axerr[nn])
ay[nn] = np.random.normal(acc[1], ayerr[nn])
else:
axerr[nn] = 0.0
ayerr[nn] = 0.0
ax[nn] = 0.0
ay[nn] = 0.0
useIdx = np.where(skipped == 0)[0]
finalTotal = len(useIdx)
skipCount = N - finalTotal
print 'Skipped %d, Final Total %d' % (skipCount, finalTotal)
x = x[useIdx]
y = y[useIdx]
vx = vx[useIdx]
vy = vy[useIdx]
vz = vz[useIdx]
ax = ax[useIdx]
ay = ay[useIdx]
xerr = xerr[useIdx]
yerr = yerr[useIdx]
vxerr = vxerr[useIdx]
vyerr = vyerr[useIdx]
vzerr = vzerr[useIdx]
axerr = axerr[useIdx]
ayerr = ayerr[useIdx]
#print 'x = ', x[-1], xerr[-1]
#print 'y = ', y[-1], yerr[-1]
#print 'vx = ', vx[-1], vxerr[-1]
#print 'vy = ', vy[-1], vyerr[-1]
#print 'vz = ', vz[-1], vzerr[-1]
#print 'ax = ', ax[-1], axerr[-1]
#print 'ay = ', ay[-1], ayerr[-1]
# Verify that we get the expected 2D distribution back out again
checkSurfaceDensity(x, y, outdir)
##########
#
# Write to output file
#
##########
_out = open(outdir + '/isotropic_stars.dat', 'w')
pickle.dump((x, xerr), _out)
pickle.dump((y, yerr), _out)
pickle.dump((vx, vxerr), _out)
pickle.dump((vy, vyerr), _out)
pickle.dump((vz, vzerr), _out)
pickle.dump((ax, axerr), _out)
pickle.dump((ay, ayerr), _out)
_out.close()
def generateData(root, outdir, N=10**7):
"""
Remember to calculate at least 2 times more stars than you want
because many are dropped from our observing window.
"""
cc = objects.Constants()
yng = young.loadAllYoungStars(root)
names = yng.getArray('name')
# Get out the distributions we will need for our simulation.
# Each relevant parameter will be plotted as a function of
# radius, divided into the following radial bins:
# BIN #1: r = 0.8" - 2.5"
# BIN #2: r = 2.5" - 3.5"
# BIN #3: r = 3.5" - 7.0"
# BIN #4: r = 7.0" - 13.5"
binsIn = np.array([0.8, 2.5, 3.5, 7.0, 13.5])
colors = ['red', 'orange', 'green', 'blue']
legend = ['0.8"-2.5"', '2.5"-3.5"', '3.5"-7.0"', '7.0"-13.5"']
r2d = yng.getArray('r2d')
py.figure(1)
py.clf()
py.hist(r2d, bins=binsIn, histtype='step', linewidth=2)
py.xlabel('Projected Radius (arcsec)')
py.ylabel('Number of Stars Observed')
py.savefig(outdir + 'hist_r2d_obs.png')
binCnt = len(binsIn) - 1
ridx = []
for bb in range(binCnt):
idx = np.where((r2d >= binsIn[bb]) & (r2d < binsIn[bb+1]))[0]
ridx.append( idx )
##########
#
# For each star we will use error distributions from the
# data itself. Set these up.
#
##########
# Positional Uncertainties in arcsec
xerrDist, yerrDist = distPositionalError(yng, binsIn)
# Proper motion uncertainties in arcsec/yr
vxerrDist, vyerrDist = distProperMotionError(yng, binsIn, r2d, ridx,
colors, legend, outdir)
# Radial velocity uncertainties in km/s
vzerrDist = distRadialVelocityError(yng, binsIn, r2d, ridx,
colors, legend, outdir)
# Acceleration uncertainties in arcsec/yr^2
axerrDist, ayerrDist = distAccelerationError(yng, binsIn, r2d,
colors, legend, outdir)
# We will need a random number distribution for each of these.
# These are all 0-1, but we will convert them into indices into
# the above distributions later on when we know the radius of each
# of the simulated stars.
xerrRand = scipy.rand(N)
yerrRand = scipy.rand(N)
vxerrRand = scipy.rand(N)
vyerrRand = scipy.rand(N)
vzerrRand = scipy.rand(N)
axerrRand = scipy.rand(N)
ayerrRand = scipy.rand(N)
##########
#
# Generate simulated stars' orbital parameters
#
##########
# Inclination and Omega (degrees)
i, o = distNormalVector(N, outdir)
# Angle to the ascending node (degrees)
w = scipy.rand(N) * 360.0
# Semi-major axis (pc) and period (years)
a, p = distSemimajorAxisPeriod(N, outdir)
# Eccentricity
e = scipy.stats.powerlaw.rvs(2, 0, size=N)
# Lets correct the eccentricities just to prevent the
# infinite loops.
edx = np.where(e > 0.98)[0]
e[edx] = 0.98
# Time of Periapse (yr)
t0 = scipy.rand(N) * p
##########
#
# Determine x, y, vx, vy, vz, ax, ay
# Assign errors accordingly.
# Record star to file IF it falls within our projected
# observing window.
#
##########
x = np.zeros(N, dtype=np.float32)
y = np.zeros(N, dtype=np.float32)
vx = np.zeros(N, dtype=np.float32)
vy = np.zeros(N, dtype=np.float32)
vz = np.zeros(N, dtype=np.float32)
ax = np.zeros(N, dtype=np.float32)
ay = np.zeros(N, dtype=np.float32)
xerr = np.zeros(N, dtype=np.float32)
yerr = np.zeros(N, dtype=np.float32)
vxerr = np.zeros(N, dtype=np.float32)
vyerr = np.zeros(N, dtype=np.float32)
vzerr = np.zeros(N, dtype=np.float32)
axerr = np.zeros(N, dtype=np.float32)
ayerr = np.zeros(N, dtype=np.float32)
skipped = np.zeros(N, dtype=np.int16)
for nn in range(N):
if ( ((nn % 10**4) == 0)):
print 'Simulated Star %d: ' % nn, time.ctime(time.time())
orb = orbits.Orbit()
orb.w = w[nn]
orb.o = o[nn]
orb.i = i[nn]
orb.e = e[nn]
orb.p = p[nn]
orb.t0 = t0[nn]
# Remember r (arcsec), v (mas/yr), a (mas/yr^2)
(pos, vel, acc) = orb.kep2xyz(np.array([0.0]), mass=4.0e6, dist=8.0e3)
pos = pos[0] # in arcsec
vel = vel[0] / 10**3 # convert to arcsec/yr
acc = acc[0] / 10**3 # convert to arcsec/yr^2
r2d = math.sqrt(pos[0]**2 + pos[1]**2)
# Impose our observing limits
if (r2d < binsIn[0]) or (r2d > binsIn[-1]):
skipped[nn] = 1
continue
tmp = np.where(binsIn > r2d)[0]
errIdx = tmp[0] - 1
# Set noisey positions
xerr[nn] = xerrDist[errIdx]
yerr[nn] = yerrDist[errIdx]
x[nn] = np.random.normal(pos[0], xerr[nn])
y[nn] = np.random.normal(pos[1], yerr[nn])
# Set noisy velocities
errCnt = len(vxerrDist)
vxerr[nn] = vxerrDist[errIdx][ int(math.floor(vxerrRand[nn] * errCnt)) ]
vyerr[nn] = vyerrDist[errIdx][ int(math.floor(vyerrRand[nn] * errCnt)) ]
vzerr[nn] = vzerrDist[errIdx][ int(math.floor(vzerrRand[nn] * errCnt)) ]
# Convert radial velocity into km/s
vel[2] *= 8.0 * cc.cm_in_au / (1e5 * cc.sec_in_yr)
vx[nn] = np.random.normal(vel[0], vxerr[nn])
vy[nn] = np.random.normal(vel[1], vyerr[nn])
vz[nn] = np.random.normal(vel[2], vzerr[nn])
# Set noisy accelerations ONLY for close in stars
if (errIdx <= 1):
# Close in stars have acceleration constraints
axerr[nn] = axerrDist[errIdx][ int(math.floor(axerrRand[nn] * errCnt)) ]
ayerr[nn] = ayerrDist[errIdx][ int(math.floor(ayerrRand[nn] * errCnt)) ]
ax[nn] = np.random.normal(acc[0], axerr[nn])
ay[nn] = np.random.normal(acc[1], ayerr[nn])
else:
axerr[nn] = 0.0
ayerr[nn] = 0.0
ax[nn] = 0.0
ay[nn] = 0.0
useIdx = np.where(skipped == 0)[0]
finalTotal = len(useIdx)
skipCount = N - finalTotal
print 'Skipped %d, Final Total %d' % (skipCount, finalTotal)
x = x[useIdx]
y = y[useIdx]
vx = vx[useIdx]
vy = vy[useIdx]
vz = vz[useIdx]
ax = ax[useIdx]
ay = ay[useIdx]
xerr = xerr[useIdx]
yerr = yerr[useIdx]
vxerr = vxerr[useIdx]
vyerr = vyerr[useIdx]
vzerr = vzerr[useIdx]
axerr = axerr[useIdx]
ayerr = ayerr[useIdx]
#print 'x = ', x[-1], xerr[-1]
#print 'y = ', y[-1], yerr[-1]
#print 'vx = ', vx[-1], vxerr[-1]
#print 'vy = ', vy[-1], vyerr[-1]
#print 'vz = ', vz[-1], vzerr[-1]
#print 'ax = ', ax[-1], axerr[-1]
#print 'ay = ', ay[-1], ayerr[-1]
# Verify that we get the expected 2D distribution back out again
checkSurfaceDensity(x, y, outdir)
##########
#
# Write to output file
#
##########
_out = open(outdir + '/isotropic_stars.dat', 'w')
pickle.dump((x, xerr), _out)
pickle.dump((y, yerr), _out)
pickle.dump((vx, vxerr), _out)
pickle.dump((vy, vyerr), _out)
pickle.dump((vz, vzerr), _out)
pickle.dump((ax, axerr), _out)
pickle.dump((ay, ayerr), _out)
_out.close()