def post(self, request, *args, **kwargs):
if not request.user.is_authenticated():
return Response({}, status.HTTP_401_UNAUTHORIZED)
data = dict(request.data)
photo = data['photo'][0]
name = photo.name
ext = os.path.splitext(name)[-1]
user_pk = data.get('user_pk', [0])
user_pk = int(user_pk[0])
if not user_pk:
user_pk = request.user.pk
user = request.user
else:
user = models.MainUser.objects.get(pk=user_pk)
if request.user.pk != user_pk:
if request.user.pk not in user.pk_can_edit:
if not request.user.is_admin:
return Response({}, status.HTTP_403_FORBIDDEN)
filepath = "profile_photos/" + \
helpers.id_generator() + str(helpers.timestamp_sec() / 100) + ext
helpers.fs.save_file(filepath, photo)
helpers.fs.generate_single_avatar(filepath, user.pk)
if not user.is_organization and not user.is_expert:
patient = users.Patient.objects.get(pk=user.patient)
patient.photo = [filepath]
patient.save()
elif user.is_expert:
expert = users.Expert.objects.get(pk=user.expert)
expert.photo = [filepath]
expert.save()
return Response({'path': filepath})
def post(self, request, *args, **kwargs):
if not request.user.is_authenticated():
return Response({}, status.HTTP_401_UNAUTHORIZED)
data = dict(request.data)
photo = data['photo'][0]
name = photo.name
ext = os.path.splitext(name)[-1]
user_pk = data.get('user_pk', [0])
user_pk = int(user_pk[0])
if not user_pk:
user_pk = request.user.pk
user = request.user
else:
user = models.MainUser.objects.get(pk=user_pk)
if request.user.pk != user_pk:
if request.user.pk not in user.pk_can_edit:
if not request.user.is_admin:
return Response({}, status.HTTP_403_FORBIDDEN)
filepath = "profile_photos/" + \
helpers.id_generator() + str(helpers.timestamp_sec() / 100) + ext
helpers.fs.save_file(filepath, photo)
helpers.fs.generate_single_avatar(filepath, user.pk)
if not user.is_organization and not user.is_expert:
patient = users.Patient.objects.get(pk=user.patient)
patient.photo = [filepath]
patient.save()
elif user.is_expert:
expert = users.Expert.objects.get(pk=user.expert)
expert.photo = [filepath]
expert.save()
return Response({'path': filepath})
def saveDicomFromImagingStudy(reference, user_pk):
r = requests.get("https://fhir-open-api.smarthealthit.org/" + reference,
stream=True)
filename = helpers.id_generator(13)
with open("/tmp/" + filename + ".dcm", 'wb') as f:
r.raw.decode_content = True
shutil.copyfileobj(r.raw, f)
f = open("/tmp/" + filename + ".dcm")
path = google_cloud.upload_to_gc(f)
return path
def deploy_dind(repo, branch):
""" Deploys an isolated `Docker-In-Docker` environment and
mounts the pulled repository to the container.
:param oauth_token: Authorization token for Owner.
:type oauth_token: String
:param repo: Name of the cloned github repository.
:type repo: String
:param branch: Branch for the pull request.
:type branch: String
"""
oauth_token = session.get('oauth_token')
name = "exdous-{}".format(id_generator())
# to ssh into container use `docker exec -ti <name> /bin/sh`
print("logging: Reading Testfile config")
test_file_params = parse(repo, oauth_token)
print("logging: Testfile config read")
client = docker.from_env()
try:
volume = test_file_params['VOL']
vol_host = os.getcwd() + "/{}".format(repo)
except KeyError:
volume = '/{}'.format(repo)
try:
cwd = test_file_params['CWD']
except KeyError:
cwd = '/'
print("logging: find free port for the application")
try:
port = test_file_params['PORTS']
free_port = find_free_port(1)[0]
except KeyError:
return redirect("404/Ports_Not_Mentioned")
print("logging: will accept tcp request on port: {}".format(free_port))
print("logging: deploying prmod/base-image")
dind_env = client.containers.run(
'prmod/base-image',
name=name,
ports={port: free_port},
volumes={
vol_host: {
'bind': volume,
'mode': 'rw'
}
},
working_dir=cwd,
privileged=True,
detach=True)
session['container_id'] = dind_env.id
print("logging: prmod/base-image deployed")
execute_testfile(dind_env, test_file_params)
print("logging: application deployed on server")
url = "{}:{}".format(Config.SERVER_IP, port)
session['{0}-{1}'.format(repo, session.get('pr_no'))] = url
return redirect(url)
def git_pull_repo(user, owner, repo, branch):
""" Pulls a repo from github and changes the branch.
:param user: Authorized User.
:type user: String
:param owner: Repository Owner.
:type owner: String
:param repo: Name of the github repository.
:type repo: String
:param branch: Branch of the PR owner.
:type branch: String
:returns: Redirects to deploy_dind.
"""
oauth_token = session.get('oauth_token')
print("logging: Pulling Repository from github")
# name of the cloned repository on server
repo_name = "{0}-{1}".format(repo, id_generator())
session['repo_name'] = repo_name
try:
# Clone the forked repository
remote_url = constants.remote_url_string.format(user, repo)
https_remote_url = constants.https_url_string.format(
oauth_token,
remote_url)
Repo.clone_from(https_remote_url, repo_name)
except KeyError:
# Fork doesnot exist, Clone from main repository
remote_url = constants.remote_url_string.format(owner, repo)
https_remote_url = constants.https_url_string.format(
oauth_token,
remote_url)
Repo.clone_from(https_remote_url, repo_name)
print("logging: Repo pull complete")
# change branch in the cloreponed repository
os.chdir(repo_name) # changes dir to the cloned repo
os.system('git checkout {}'.format(branch))
os.chdir('../') # change back to the pwd
return redirect(
url_for(
'deploy_dind',
oauth_token=oauth_token,
repo=repo_name,
branch=branch)
)
def upload_photo():
if request.method == 'POST':
if 'file_data' not in request.files:
return "File data not found"
file = request.files['file_data']
filename = file.filename
if file and allowed_file(file.filename):
logical_id = choice([1, 2])
physical_ids = machine_mapping[logical_id]
photoid = id_generator()
payload = {"logicalFile": logical_id, "imageId": photoid}
try:
for phy in physical_ids:
r1 = requests.post("http://%s/addimage" %
(port_mapping[phy]),
data=payload,
files={'file': file})
file.seek(0)
r2 = get_caption(file)
except Exception, e:
print e
return jsonify({
"error":
"There was some issue in uploading you files. Please try again."
})
# Insert into Mongo if request succeeded
item = {
"logical_id": logical_id,
"_id": photoid,
"physical_ids": physical_ids,
"caption": r2["caption"],
"category": r2["category"]
}
item["url"] = get_url(item)
collection.insert_one(item)
return jsonify(item)
else:
return jsonify({"error": "File name not allowed!"})