def __init__(self, *p):
State.__init__(self, *p)
self.hmm = None
self.factory = None
self.repeatGeneratorX = None
self.repeatGeneratorY = None
self.consensus = ""
self.memoizeX = defaultdict(dict)
self.memoizeY = defaultdict(dict)
self.memoizeXsimple = dict()
self.memoizeYsimple = dict()
#self.dgmemoize = dict()
#self.rdgmemoize = dict()
self.consensusSampler = None
self.durationSampler = None
self.backgroundProbability = None
self.time = None
self.transitionMatrix = None
self.consensusDistribution = None
self.repeatLengthDistribution = None
self.repProb = None
self.modelversion = None
self.trackEmissions = None
self.x_count = 0
self.y_count = 0
self.cons_set = set()
self.cons_list = list()
def __init__(self, *p):
State.__init__(self, *p)
self.durations = list()
def __init__(self, *p):
State.__init__(self, *p)
self.order = 0
def __init__(self, *p):
State.__init__(self, *p)
self.durations = list()
def __init__(self, *p):
State.__init__(self, *p)
self.order = 0
