def test_state_loading(self):
a = State()
a.load(self.inputY)
X = a.toJSON()
Y = self.Y
self.assertDictEqual(X, Y, "Loading and dumping to JSON does not " + \
" work: " + str(X) + " != " + str(Y))
def toJSON(self):
ret = State.toJSON(self)
ret['backgroundprob'] = self.backgroundProbability
ret['time'] = self.time
ret['transitionmatrix'] = self.transitionMatrix
if self.consensusDistribution != None:
ret['consensusdistribution'] = \
dist_to_json(self.consensusDistribution)
if self.repeatLengthDistribution != None:
ret['repeatlengthdistribution'] = \
dist_to_json(self.repeatLengthDistribution)
ret['trackemissions'] = self.trackEmissions
if self.version != None:
ret['version'] = self.version
if self.repProb != None:
ret['repprob'] = float(self.repProb)
#TODO: save consensus distribution
return ret
def toJSON(self):
ret = State.toJSON(self)
ret["durations"] = self.durations
return ret
def toJSON(self):
ret = State.toJSON(self)
ret['order'] = self.order
return ret
def toJSON(self):
ret = State.toJSON(self)
ret["durations"] = self.durations
return ret
def toJSON(self):
ret = State.toJSON(self)
ret['order'] = self.order
return ret
