ax = plt.contourf(full_elevation)
plt.colorbar(ax)
plt.show()
# - read the first 10 rows of the elevation layers
selection_slice = slice(0, 10)
sliced_elevation = bag_0.elevation(mask_nan=True, row_range=selection_slice)
logger.info("sliced elevation array:\n type: %s\n shape: %s\n dtype: %s"
% (type(sliced_elevation), sliced_elevation.shape, sliced_elevation.dtype))
ax = plt.contourf(sliced_elevation)
plt.colorbar(ax)
plt.show()
# - get uncertainty shape
logger.info("uncertainty shape: %s" % (bag_0.uncertainty_shape(), ))
# - read the full uncertainty
full_uncertainty = bag_0.uncertainty(mask_nan=True)
logger.info("uncertainty array:\n type: %s\n shape: %s\n dtype: %s"
% (type(full_uncertainty), full_uncertainty.shape, full_uncertainty.dtype))
ax = plt.contourf(full_uncertainty)
plt.colorbar(ax)
plt.show()
# - read the first 10 rows of the uncertainty layers
selection_slice = slice(10, 20)
sliced_uncertainty = bag_0.uncertainty(mask_nan=True, row_range=selection_slice)
logger.info("sliced uncertainty array:\n type: %s\n shape: %s\n dtype: %s"
% (type(sliced_uncertainty), sliced_uncertainty.shape, sliced_uncertainty.dtype))
ax = plt.contourf(sliced_uncertainty)
plt.colorbar(ax)
plt.show()
# - tracking list
logger.setLevel(logging.NOTSET)
ch = logging.StreamHandler()
ch.setLevel(logging.DEBUG) # change to WARNING to reduce verbosity, DEBUG for high verbosity
ch_formatter = logging.Formatter('%(levelname)-9s %(name)s.%(funcName)s:%(lineno)d > %(message)s')
ch.setFormatter(ch_formatter)
logger.addHandler(ch)
from hydroffice.bag import BAGFile
from hydroffice.bag import BAGError
from hydroffice.bag.helper import Helper
bag_file = os.path.join(Helper.samples_folder(), "bdb_00.bag")
if os.path.exists(bag_file):
print("- file_bag_0: %s" % bag_file)
bag = BAGFile(bag_file)
bag_meta = bag.populate_metadata()
print(bag_meta)
bag_uncertainty = bag.uncertainty(mask_nan=True)
print(type(bag.elevation(mask_nan=True)), bag.elevation(mask_nan=True).shape, bag.elevation(mask_nan=True).dtype)
from hydroffice.bag.uncertainty import Uncertainty2Gdal
Uncertainty2Gdal(bag_uncertainty=bag_uncertainty, bag_meta=bag_meta, fmt="ascii", epsg=4326)
Uncertainty2Gdal(bag_uncertainty=bag_uncertainty, bag_meta=bag_meta, fmt="geotiff", epsg=4326)
Uncertainty2Gdal(bag_uncertainty=bag_uncertainty, bag_meta=bag_meta, fmt="xyz", epsg=4326)
def main():
logger = logging.getLogger()
logger.setLevel(logging.NOTSET)
import argparse
from hydroffice.bag import BAGFile, is_bag, __version__
app_name = "bag_uncertainty"
app_info = "Extraction of uncertainty layer from an OpenNS BAG file, using hydroffice.bag r%s" % __version__
formats = ['ascii', 'geotiff', 'xyz']
parser = argparse.ArgumentParser(prog=app_name, description=app_info)
parser.add_argument("bag_file", type=str, help="a valid BAG file from which to extract metadata")
parser.add_argument("-f", "--format", help="one of the available file format: " + ", ".join(formats),
choices=formats, default="geotiff", metavar='')
parser.add_argument("-o", "--output", help="the output file", type=str)
parser.add_argument("-v", "--verbose", help="increase output verbosity", action="store_true")
args = parser.parse_args()
if args.verbose:
print("> verbosity: ON")
ch = logging.StreamHandler()
ch.setLevel(logging.DEBUG) # change to WARNING to reduce verbosity, DEBUG for high verbosity
ch_formatter = logging.Formatter('%(levelname)-9s %(name)s.%(funcName)s:%(lineno)d > %(message)s')
ch.setFormatter(ch_formatter)
logger.addHandler(ch)
if args.verbose:
print("> input: %s" % args.bag_file)
if args.output:
args.output = os.path.abspath(args.output)
print("> output: %s" % args.output)
else:
args.output = None
print("> output: [default]")
print("> format: %s" % args.format)
if not os.path.exists(args.bag_file):
parser.exit(1, "ERROR: the input valid does not exist: %s" % args.bag_file)
if not is_bag(args.bag_file):
parser.exit(1, "ERROR: the input valid does not seem a BAG file: %s" % args.bag_file)
bf = BAGFile(args.bag_file)
bag_meta = None
try:
bag_meta = bf.populate_metadata()
except Exception as e:
parser.exit(1, "ERROR: issue in metadata population: %s" % e)
bag_uncertainty = None
try:
bag_uncertainty = bf.uncertainty(mask_nan=False)
except Exception as e:
parser.exit(1, "ERROR: issue in uncertainty population: %s" % e)
try:
from hydroffice.bag.uncertainty import Uncertainty2Gdal
Uncertainty2Gdal(bag_uncertainty=bag_uncertainty, bag_meta=bag_meta, fmt=args.format, out_file=args.output)
except Exception as e:
parser.exit(1, "ERROR: issue in output creation: %s" % e)
if args.verbose:
print("> DONE")
