def getEdgeCoord(x, y, circRad, imp, msg):
IJ.run(imp, "Select None", "")
imp.setRoi(IJ.OvalRoi(x, y, circRad * 2, circRad * 2))
gd = NonBlockingGenericDialog(msg)
gd.addMessage('Select ' + msg + ' coordinates')
gd.showDialog()
if gd.wasCanceled():
return None
# wait for user input
coord = imp.getRoi().getContourCentroid()
IJ.run(imp, "Select None", "")
return coord[0] - circRad, coord[1] - circRad
def makeSelections(x, y, rm, imp, circRad):
rm.reset()
for j in range(len(x)):
for i in range(len(x[-1])):
imp.setRoi(IJ.OvalRoi(x[j][i], y[j][i], circRad * 2, circRad * 2))
rm.addRoi(imp.getRoi())
rm.runCommand(imp, "Show All with labels")
gd = NonBlockingGenericDialog('Confirm ROI positions')
gd.addMessage('Are the ROIs positioned correctly? Move them if necessary')
gd.showDialog()
if gd.wasCanceled():
return None
return imp, rm