Exemplo n.º 1
0
def getEdgeCoord(x, y, circRad, imp, msg):
    IJ.run(imp, "Select None", "")
    imp.setRoi(IJ.OvalRoi(x, y, circRad * 2, circRad * 2))
    gd = NonBlockingGenericDialog(msg)
    gd.addMessage('Select ' + msg + ' coordinates')
    gd.showDialog()
    if gd.wasCanceled():
        return None
    # wait for user input
    coord = imp.getRoi().getContourCentroid()

    IJ.run(imp, "Select None", "")
    return coord[0] - circRad, coord[1] - circRad
Exemplo n.º 2
0
def makeSelections(x, y, rm, imp, circRad):
    rm.reset()
    for j in range(len(x)):
        for i in range(len(x[-1])):
            imp.setRoi(IJ.OvalRoi(x[j][i], y[j][i], circRad * 2, circRad * 2))
            rm.addRoi(imp.getRoi())
    rm.runCommand(imp, "Show All with labels")
    gd = NonBlockingGenericDialog('Confirm ROI positions')
    gd.addMessage('Are the ROIs positioned correctly? Move them if necessary')
    gd.showDialog()
    if gd.wasCanceled():
        return None
    return imp, rm