def initUI(self):
""" Finished Dialog box
Simple dialog box that says "Finished", to
bw displayed when all image analysis has
finished. When OK button is pressed all
ImageJ windows are closed.
"""
panel = JPanel()
self.getContentPane().add(panel)
panel.setBackground(Color.WHITE)
panel.setLayout(None)
self.setTitle("Analysis has finished")
self.setSize(300, 150)
OKbutton = JButton("OK", actionPerformed=self.onOK)
OKbutton.setBackground(Color.BLACK)
OKbutton.setBounds(80, 50, 100, 30)
panel.add(OKbutton)
Title = JTextArea("Analysis has finised!! :-)")
Title.setBounds(15, 10, 250, 20)
panel.add(Title)
self.setLocationRelativeTo(None)
self.setLocation(int(IJ.getScreenSize().width * 0.01),
int(IJ.getScreenSize().height * 3 / 10))
self.setVisible(True)
def green2():
"""
Displays a duplicate of the active image.
"""
green2 = IJ.getImage()
green2 = green2.duplicate()
ImageWindow.setNextLocation(int(IJ.getScreenSize().width * 1 / 3),
int(IJ.getScreenSize().height * 1 / 14))
green2.show()
def subpixels(pixel):
""" Math: subtraction
duplicates and displayes current image.
Performs puxel subtraction using Math.
"""
green = IJ.getImage()
green = green.duplicate()
IJ.run(green, "Subtract...", "value=" + pixel)
ImageWindow.setNextLocation(int(IJ.getScreenSize().width * 1 / 3),
int(IJ.getScreenSize().height * 1 / 14))
green.show()
bgTitle()
def run(title):
gd = GenericDialog('Record Desktop')
gd.addNumericField('Max. frames:', 50, 0)
gd.addNumericField('Milisecond interval:', 300, 0)
gd.addSlider('Start in (seconds):', 0, 20, 5)
gd.showDialog()
if gd.wasCanceled():
return
n_frames = int(gd.getNextNumber())
interval = gd.getNextNumber() / 1000.0 # in seconds
delay = int(gd.getNextNumber())
snaps = []
try:
while delay > 0:
IJ.showStatus('Starting in ' + str(delay) + 's.')
time.sleep(1) # one second
delay -= 1
IJ.showStatus('')
System.out.println("Starting...")
# start capturing
robot = Robot()
box = Rectangle(IJ.getScreenSize())
start = System.currentTimeMillis() / 1000.0 # in seconds
last = start
intervals = []
real_interval = 0
# Initial shot
snaps.append(robot.createScreenCapture(box))
while len(snaps) < n_frames and last - start < n_frames * interval:
now = System.currentTimeMillis() / 1000.0 # in seconds
real_interval = now - last
if real_interval >= interval:
last = now
snaps.append(robot.createScreenCapture(box))
intervals.append(real_interval)
else:
time.sleep(interval / 5) # time in seconds
# Create stack
System.out.println("End")
awt = snaps[0]
stack = ImageStack(awt.getWidth(None), awt.getHeight(None), None)
t = 0
for snap, real_interval in zip(snaps, intervals):
stack.addSlice(str(IJ.d2s(t, 3)),
ImagePlus('', snap).getProcessor())
snap.flush()
t += real_interval
ImagePlus("Desktop recording", stack).show()
except Exception, e:
print "Some error ocurred:"
print e
for snap in snaps:
snap.flush()
def run(title):
gd = GenericDialog("Record Desktop")
gd.addNumericField("Max. frames:", 50, 0)
gd.addNumericField("Milisecond interval:", 300, 0)
gd.addSlider("Start in (seconds):", 0, 20, 5)
gd.showDialog()
if gd.wasCanceled():
return
n_frames = int(gd.getNextNumber())
interval = gd.getNextNumber() / 1000.0 # in seconds
delay = int(gd.getNextNumber())
snaps = []
try:
while delay > 0:
IJ.showStatus("Starting in " + str(delay) + "s.")
time.sleep(1) # one second
delay -= 1
IJ.showStatus("")
System.out.println("Starting...")
# start capturing
robot = Robot()
box = Rectangle(IJ.getScreenSize())
start = System.currentTimeMillis() / 1000.0 # in seconds
last = start
intervals = []
real_interval = 0
# Initial shot
snaps.append(robot.createScreenCapture(box))
while len(snaps) < n_frames and last - start < n_frames * interval:
now = System.currentTimeMillis() / 1000.0 # in seconds
real_interval = now - last
if real_interval >= interval:
last = now
snaps.append(robot.createScreenCapture(box))
intervals.append(real_interval)
else:
time.sleep(interval / 5) # time in seconds
# Create stack
System.out.println("End")
awt = snaps[0]
stack = ImageStack(awt.getWidth(None), awt.getHeight(None), None)
t = 0
for snap, real_interval in zip(snaps, intervals):
stack.addSlice(str(IJ.d2s(t, 3)), ImagePlus("", snap).getProcessor())
snap.flush()
t += real_interval
ImagePlus("Desktop recording", stack).show()
except Exception, e:
print "Some error ocurred:"
print e
for snap in snaps:
snap.flush()
def printLog(text, indent):
msgStr = ''
for i in (range(indent)):
msgStr += ' '
print msgStr,text #to command line
IJ.log(msgStr + text)
if __name__ == '__main__':
printLog("===========================================================",0)
printLog(" ********rep_stack_V7:"+time.strftime("%c")+" ***********",0)
try:
imp = IJ.getImage() #for opened image
except:
printLog("No image found, please select one",0)
imp = openFile() #prompt user to open an image
if imp:
#auto set the zoom of montaged image
global mZoom
screen = IJ.getScreenSize()
screenWidth = screen.width
impSize = imp.width
printLog("screenWidth is:" + str(screenWidth)+", image size is:" + str(impSize),0)
mZoom = 100*screenWidth*1024/(2560*impSize) #100 for 1560 width screen when image is 1024X1024
printLog("mZoom is: " + str(mZoom),0)
selectBest(imp)
printLog(" ********Finished on "+time.strftime("%X")+" ***********",0)
printLog("===========================================================",0)
