def update_entity_hierarchy():
logger.info('--Updating entity hierarchy----')
fname = os.path.join(path, 'famplex/relations.csv')
g = make_ent_hierarchy(fname)
g_chebi = make_chebi_hierarchy()
g += g_chebi
gb = g.serialize(format='nt')
gb = gb.replace(b'\n\n', b'\n').strip()
rows = b'\n'.join(sorted(gb.split(b'\n')))
fname = os.path.join(path, 'entity_hierarchy.rdf')
with open(fname, 'wb') as fh:
fh.write(rows)
def update_entity_hierarchy():
logger.info('--Updating entity hierarchy----')
fname = os.path.join(path, '../../bioentities/relations.csv')
make_ent_hierarchy(fname)
def update_entity_hierarchy():
logger.info('--Updating entity hierarchy----')
fname = os.path.join(path, '../../bioentities/relations.csv')
make_ent_hierarchy(fname)
