def test_filter_builder_multiple(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=False,
is_cigar_valid=False)
self.assertEquals(["UNMATCHED_PRIMER_PAIR","INVALID_CIGAR"],
clipper._filter_builder(transform))
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=True,
is_cigar_valid=False)
self.assertEquals(["UNMAPPED_ALIGNMENT"],
clipper._filter_builder(transform))
def test_filter_builder_multiple(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=False,
is_cigar_valid=False)
self.assertEquals(["UNMATCHED_PRIMER_PAIR", "INVALID_CIGAR"],
clipper._filter_builder(transform))
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=True,
is_cigar_valid=False)
self.assertEquals(["UNMAPPED_ALIGNMENT"],
clipper._filter_builder(transform))
def test_filter_builder_invalidCigar(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=False,
is_cigar_valid=False)
self.assertEquals(["INVALID_CIGAR"],
clipper._filter_builder(transform))
def test_filter_builder_unmappedAlignment(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=True,
is_cigar_valid=True)
self.assertEquals(["UNMAPPED_ALIGNMENT"],
clipper._filter_builder(transform))
def test_filter_builder_unmatchedPrimerPair(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=False,
is_cigar_valid=True)
self.assertEquals(["UNMATCHED_PRIMER_PAIR"],
clipper._filter_builder(transform))
def test_filter_builder_noFilters(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=False,
is_cigar_valid=True)
self.assertEquals([], clipper._filter_builder(transform))
def test_filter_builder_invalidCigar(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=False,
is_cigar_valid=False)
self.assertEquals(["INVALID_CIGAR"],
clipper._filter_builder(transform))
def test_filter_builder_unmappedAlignment(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=True,
is_cigar_valid=True)
self.assertEquals(["UNMAPPED_ALIGNMENT"],
clipper._filter_builder(transform))
def test_filter_builder_unmatchedPrimerPair(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=True),
is_unmapped=False,
is_cigar_valid=True)
self.assertEquals(["UNMATCHED_PRIMER_PAIR"],
clipper._filter_builder(transform))
def test_filter_builder_noFilters(self):
transform = MicroMock(primer_pair=MockPrimerPair(is_unmatched=False),
is_unmapped=False,
is_cigar_valid=True)
self.assertEquals([], clipper._filter_builder(transform))