def test_inheritance(self):
import libcellml
from libcellml import Importer
# Test inheritance.
x = Importer()
self.assertIsInstance(x, libcellml.logger.Logger)
# Test access to inherited methods.
self.assertIsNone(x.issue(0))
self.assertIsNone(x.issue(-1))
self.assertEqual(x.issueCount(), 0)
x.addIssue(libcellml.Issue())
self.assertEqual(x.issueCount(), 1)
def test_replace_model(self):
from libcellml import Component, Importer, Model, Parser
parser = Parser()
model = parser.parseModel(
file_contents('importer/generic_no_source.cellml'))
importer = Importer()
wrongSourceModel = Model('wrong')
rightSourceModel = Model('right')
rightSourceModel.addComponent(Component('a'))
rightSourceModel.addComponent(Component('b'))
rightSourceModel.addComponent(Component('c'))
rightSourceModel.addComponent(Component('d'))
self.assertTrue(
importer.addModel(wrongSourceModel, 'i_dont_exist.cellml'))
self.assertFalse(
importer.replaceModel(rightSourceModel, 'not_in_library'))
self.assertTrue(
importer.replaceModel(rightSourceModel, 'i_dont_exist.cellml'))
importer.resolveImports(model, '')
self.assertEqual(0, importer.issueCount())
self.assertFalse(model.hasUnresolvedImports())
def test_replace_model(self):
from libcellml import Component, Importer, Model, Parser
parser = Parser()
model = parser.parseModel(
file_contents("importer/generic_no_source.cellml"))
importer = Importer()
wrongSourceModel = Model("wrong")
rightSourceModel = Model("right")
rightSourceModel.addComponent(Component("a"))
rightSourceModel.addComponent(Component("b"))
rightSourceModel.addComponent(Component("c"))
rightSourceModel.addComponent(Component("d"))
self.assertTrue(
importer.addModel(wrongSourceModel, "i_dont_exist.cellml"))
self.assertFalse(
importer.replaceModel(rightSourceModel, "not_in_library"))
self.assertTrue(
importer.replaceModel(rightSourceModel, "i_dont_exist.cellml"))
importer.resolveImports(model, "")
self.assertEqual(0, importer.issueCount())
self.assertFalse(model.hasUnresolvedImports())
def test_is_resolved_component(self):
from libcellml import Importer, Parser
parser = Parser()
importer = Importer()
model = parser.parseModel(
file_contents("importer/component_importer_unresolved.cellml"))
self.assertEqual(0, parser.issueCount())
importer.resolveImports(model, resource_path("importer/"))
self.assertEqual(1, importer.issueCount())
c = model.component(0)
self.assertFalse(c.isResolved())
def test_is_resolved_units(self):
from libcellml import Importer, Parser
parser = Parser()
importer = Importer()
model = parser.parseModel(
file_contents("importer/master_units.cellml"))
self.assertEqual(0, parser.issueCount())
importer.resolveImports(model, resource_path("importer/"))
self.assertEqual(0, importer.issueCount())
u = model.units(0)
self.assertTrue(u.isResolved())
def test_clear_imports(self):
from libcellml import Importer, Parser
parser = Parser()
importer = Importer()
model = parser.parseModel(
file_contents('importer/nested_components.cellml'))
self.assertEqual(0, parser.issueCount())
importer.resolveImports(model, resource_path('importer/'))
self.assertEqual(0, importer.issueCount())
self.assertFalse(model.hasUnresolvedImports())
importer.clearImports(model)
self.assertTrue(model.hasUnresolvedImports())
def test_add_model(self):
from libcellml import Component, Importer, Model, Parser
parser = Parser()
importer = Importer()
model = parser.parseModel(
file_contents('importer/generic_no_source.cellml'))
sourceModel = Model('source')
sourceModel.addComponent(Component('a'))
sourceModel.addComponent(Component('b'))
sourceModel.addComponent(Component('c'))
sourceModel.addComponent(Component('d'))
# Add a model manually to the library, including the URL that it will replace in future imports.
self.assertTrue(importer.addModel(sourceModel, 'i_dont_exist.cellml'))
self.assertFalse(importer.addModel(sourceModel, 'i_dont_exist.cellml'))
importer.resolveImports(model, '')
self.assertEqual(0, importer.issueCount())
self.assertFalse(model.hasUnresolvedImports())
if __name__ == '__main__':
# STEP 1
# Parse an existing CellML model from a file.
read_file = open('debugAnalysisExample.cellml', 'r')
parser = Parser()
model = parser.parseModel(read_file.read())
# STEP 2
# Resolve any imports and flatten the model for analysis.
importer = Importer()
# Resolve the imports.
importer.resolveImports(model, '')
# Check for issues.
print('The importer found {} issues.'.format(importer.issueCount()))
for i in range(0, importer.issueCount()):
issue = importer.issue(i)
print(issue.description())
# Flatten the model.
model = importer.flattenModel(model)
# STEP 3
# Create an Validator instance and pass the model to it for processing.
validator = Validator()
validator.validateModel(model)
# Print any issues to the terminal.
print('The validator found {} issues.'.format(validator.issueCount()))
for i in range(0, validator.issueCount()):
