def test_remove_all_models(self):
from libcellml import Parser, Importer
parser = Parser()
model = parser.parseModel(file_contents('importer/diamond.cellml'))
importer = Importer()
importer.resolveImports(model, resource_path('importer/'))
self.assertEqual(3, importer.libraryCount())
importer.removeAllModels()
self.assertEqual(0, importer.libraryCount())
def test_importer(self):
from libcellml import Importer, Parser, Printer
parser = Parser()
i = Importer()
m = parser.parseModel(file_contents('importer/diamond.cellml'))
printer = Printer()
i.resolveImports(m, resource_path('importer/'))
self.assertFalse(m.hasUnresolvedImports())
# Library should contain left, right, and one instance (not two) of the point.
self.assertEqual(3, i.libraryCount())
self.assertEqual(resource_path('importer/diamond_left.cellml'),
i.key(0))
self.assertEqual(resource_path('importer/diamond_point.cellml'),
i.key(1))
self.assertEqual(resource_path('importer/diamond_right.cellml'),
i.key(2))
# Access library items by their URL.
left = i.library(resource_path('importer/diamond_left.cellml'))
self.assertEqual(file_contents('importer/diamond_left.cellml'),
printer.printModel(left))
# 10.c
# Check the Importer for issues and print any found to the terminal - we do not expect any at this stage.
print_issues(importer)
# end 10.c
# The components that we want to reuse from the GateModel.cellml and PotassiumChannelController.cellml
# are now available to us in two ways:
# - through the model() function of the destination component's ImportSource item or
# - as an item in the importer's library. The library items can be retrieved either by index
# or by key, where the key is the name of the file that was resolved.
# 10.d
# Iterate through the items in the library (Importer.libraryCount() will give you
# the total), and print its keys to the terminal. The keys can be retrieved as a
# string from the Importer.key(index) function. At this stage we expect only one model in the library.
print('The importer has {} models in the library.'.format(importer.libraryCount()))
for i in range(0, importer.libraryCount()):
print(' library({}) = {}'.format(i, importer.key(i)))
print()
# 10.e
# We can simply use a clone of the imported components to define dummy variables in the
# destination component.
# Create dummy components from the resolved imported components. You can get these from the
# library or from the import source's model (or one of each, to prove to yourself that it works
# either way!).
dummy_gate = imported_gate.importSource().model().component(imported_gate.importReference()).clone()
dummy_controller = importer.library('PotassiumChannelController.cellml').component(controller.importReference()).clone()
# GOTCHA: Note that when an item is added to a new parent, it is automatically removed from
# its original parent. Iterating through a set of children is best done in descending
# 10.c
# Check the Importer for issues and print any found to the terminal - we do not expect any at this stage.
print_issues(importer)
# end 10.c
# The components that we want to reuse from the GateModel.cellml and PotassiumChannelController.cellml
# are now available to us in two ways:
# - through the model() function of the destination component's ImportSource item or
# - as an item in the importer's library. The library items can be retrieved either by index
# or by key, where the key is the name of the file that was resolved.
# 10.d
# Iterate through the items in the library (Importer.libraryCount() will give you
# the total), and print its keys to the terminal. The keys can be retrieved as a
# string from the Importer.key(index) function. At this stage we expect only one model in the library.
print('The importer has {} models in the library.'.format(
importer.libraryCount()))
for i in range(0, importer.libraryCount()):
print(' library({}) = {}'.format(i, importer.key(i)))
print()
# 10.e
# We can simply use a clone of the imported components to define dummy variables in the
# destination component.
# Create dummy components from the resolved imported components. You can get these from the
# library or from the import source's model (or one of each, to prove to yourself that it works
# either way!).
dummy_gate = imported_gate.importSource().model().component(
imported_gate.importReference()).clone()
dummy_controller = importer.library(
os.path.join(import_path,
'PotassiumChannelController.cellml')).component(
analyser.analyseModel(flat_model)
print(' - the analyser found {} issues'.format(analyser.issueCount()))
for i in range(0, analyser.issueCount()):
print(' - {}'.format(analyser.issue(i).description()))
print()
# STEP 4
# The Validator and Analyser classes process only the contents of concrete items (ie: not the contents of
# imported items) of a model.
# After successfully resolving a model's imports using an importer, the importer will store instances
# of all of the dependencies of the resolved model. These are accessible through the "library" function.
# We can ascertain that all of import dependencies meet the diagnostic checks of the Validator and the
# Analyser individually by iterating through the importer's library.
# Loop through the importer library and call the validator for each model.
for m in range(0, importer.libraryCount()):
# Retrieve the library model by index, m.
validator.validateModel(importer.library(m))
# Retrieve the key under which it's stored: this will be the URL at which the imported model was found.
print("The validator found {} issues in {}.".format(validator.issueCount(),importer.key(m)))
for i in range(0, validator.issueCount()):
print(" - {}".format(validator.issue(i).description()))
print()
# STEP 5
# Fix the validation errors in the imported files.
# According to the printout above, we need to add units to the "iNeedUnits"
# variable, to be found inside the "importExample3.cellml" file.
