def test_save(self):
resp = self.api.read('foo/a.ipynb')
nbcontent = json.loads(resp.text)['content']
nb = from_dict(nbcontent)
nb.cells.append(new_markdown_cell(u'Created by test ³'))
nbmodel = {'content': nb, 'type': 'notebook'}
resp = self.api.save('foo/a.ipynb', body=json.dumps(nbmodel))
nbcontent = self.api.read('foo/a.ipynb').json()['content']
newnb = from_dict(nbcontent)
self.assertEqual(newnb.cells[0].source,
u'Created by test ³')
def sanitize_outputs(self, outputs, skip_sanitize=('metadata',
'traceback',
'text/latex',
'prompt_number',
'output_type',
'name',
'execution_count'
)):
sanitized_outputs = []
for output in outputs:
sanitized = {}
for key in output.keys():
if key in skip_sanitize:
sanitized[key] = output[key]
else:
if key == 'data':
sanitized[key] = {}
for data_key in output[key].keys():
# Filter the keys in the SUB-dictionary again
if data_key in skip_sanitize:
sanitized[key][data_key] = output[key][data_key]
else:
sanitized[key][data_key] = self.sanitize(output[key][data_key])
# Otherwise, just create a normal dictionary entry from
# one of the keys of the dictionary
else:
# Create the dictionary entries on the fly, from the
# existing ones to be compared
sanitized[key] = self.sanitize(output[key])
sanitized_outputs.append(nbformat.from_dict(sanitized))
return sanitized_outputs
def test_checkpoints_follow_file(self):
# Read initial file state
orig = self.api.read('foo/a.ipynb')
# Create a checkpoint of initial state
r = self.api.new_checkpoint('foo/a.ipynb')
cp1 = r.json()
# Modify file and save
nbcontent = json.loads(orig.text)['content']
nb = from_dict(nbcontent)
hcell = new_markdown_cell('Created by test')
nb.cells.append(hcell)
nbmodel = {'content': nb, 'type': 'notebook'}
self.api.save('foo/a.ipynb', body=json.dumps(nbmodel))
# Rename the file.
self.api.rename('foo/a.ipynb', 'foo/z.ipynb')
# Looking for checkpoints in the old location should yield no results.
self.assertEqual(self.api.get_checkpoints('foo/a.ipynb').json(), [])
# Looking for checkpoints in the new location should work.
cps = self.api.get_checkpoints('foo/z.ipynb').json()
self.assertEqual(cps, [cp1])
# Delete the file. The checkpoint should be deleted as well.
self.api.delete('foo/z.ipynb')
cps = self.api.get_checkpoints('foo/z.ipynb').json()
self.assertEqual(cps, [])
def write_notebook(self, include_html=True):
suffix = "_responses_with_names" if self.include_usernames else "_responses"
nb_name = self.nb_name_stem + suffix
output_file = os.path.join(PROCESSED_NOTEBOOK_DIR, nb_name + '.ipynb')
html_output = os.path.join(PROCESSED_NOTEBOOK_DIR, nb_name + '.html')
remove_duplicate_answers = not self.include_usernames
filtered_cells = []
for prompt in self.question_prompts:
filtered_cells += prompt.cells
answers = prompt.answers_without_duplicates if remove_duplicate_answers else prompt.answers
for gh_username, response_cells in answers.items():
if self.include_usernames:
filtered_cells.append(
NotebookUtils.markdown_heading_cell(self.gh_username_to_fullname(gh_username), 4))
filtered_cells.extend(response_cells)
answer_book = deepcopy(self.template)
answer_book['cells'] = filtered_cells
nb = nbformat.from_dict(answer_book)
print "Writing", output_file
with io.open(output_file, 'wt') as fp:
nbformat.write(nb, fp, version=4)
if include_html:
# TODO why is the following necessary?
nb = nbformat.reads(nbformat.writes(nb, version=4), as_version=4)
html_content, _ = nbconvert.export_html(nb)
print "Writing", html_output
with io.open(html_output, 'w') as fp:
fp.write(html_content)
def main():
arguments = docopt(__doc__, version='nbgen 2.0')
cmd = subprocess.run([arguments["<path>"]] + arguments["<arguments>"], stdout=subprocess.PIPE)
cmd.check_returncode()
cells = json.loads(cmd.stdout.decode("utf-8"))
nb_dict = {
"metadata": {},
"nbformat": 4,
"nbformat_minor": 0,
"cells": cells,
}
notebook = nbformat.from_dict(nb_dict)
ep = ExecutePreprocessor(timeout=600, kernel_name='python3')
ep.preprocess(notebook, {'metadata': {}})
if arguments["nb"]:
nbformat.write(notebook, "{}.ipynb".format(arguments["<name>"]))
elif arguments["slides"]:
config = Config()
reveal_cdn = "https://cdnjs.cloudflare.com/ajax/libs/reveal.js/3.3.0/"
config.SlidesExporter.reveal_url_prefix = (arguments["--reveal"] or reveal_cdn)
slides, __ = export_slides(nb=notebook, config=config)
with open("{}.html".format(arguments["<name>"]), "w") as html_file:
html_file.write(slides)
def setUp(self):
if self.metadata is None:
metadata = self.default_metadata
else:
metadata = self.metadata
self.orig = nbformat.from_dict({
"nbformat": NBFORMAT_VERSION,
"nbformat_minor": 0,
"metadata": metadata,
"cells": self.cells
})
with tempfile.TemporaryDirectory() as d:
ipynb0_name = d + "/0"
rmd_name = d + "/1"
ipynb1_name = d + "/2"
with open(ipynb0_name, "w") as f:
nbformat.write(self.orig, f)
if self.use_rmd:
ipyrmd.ipynb_to_rmd(ipynb0_name, rmd_name)
ipyrmd.rmd_to_ipynb(rmd_name, ipynb1_name)
else:
ipyrmd.ipynb_to_spin(ipynb0_name, rmd_name)
ipyrmd.spin_to_ipynb(rmd_name, ipynb1_name)
with open(rmd_name) as f:
self.rmd = f.read()
with open(ipynb1_name) as f:
self.roundtrip = nbformat.read(f, NBFORMAT_VERSION)
def post(self, format):
exporter = get_exporter(format, config=self.config)
model = self.get_json_body()
name = model.get("name", "notebook.ipynb")
nbnode = from_dict(model["content"])
try:
output, resources = exporter.from_notebook_node(
nbnode,
resources={
"metadata": {"name": name[: name.rfind(".")]},
"config_dir": self.application.settings["config_dir"],
},
)
except Exception as e:
raise web.HTTPError(500, "nbconvert failed: %s" % e)
if respond_zip(self, name, output, resources):
return
# MIME type
if exporter.output_mimetype:
self.set_header("Content-Type", "%s; charset=utf-8" % exporter.output_mimetype)
self.finish(output)
def _runTest(self):
kernel = 'python%d' % sys.version_info[0]
cur_dir = os.path.dirname(self.nbfile)
with open(self.nbfile) as f:
nb = nbformat.read(f, as_version=4)
if self.cov:
covdict = {'cell_type': 'code', 'execution_count': 1,
'metadata': {'collapsed': True}, 'outputs': [],
'nbsphinx': 'hidden',
'source': 'import coverage\n'
'coverage.process_startup()\n'
'import sys\n'
'sys.path.append("{0}")\n'.format(cur_dir)
}
nb['cells'].insert(0, nbformat.from_dict(covdict))
exproc = ExecutePreprocessor(kernel_name=kernel, timeout=600)
try:
run_dir = os.getenv('WRADLIB_BUILD_DIR', cur_dir)
exproc.preprocess(nb, {'metadata': {'path': run_dir}})
except CellExecutionError as e:
raise e
if self.cov:
nb['cells'].pop(0)
with io.open(self.nbfile, 'wt') as f:
nbformat.write(nb, f)
self.assertTrue(True)
def save(self, model, path=''):
"""Save the file model and return the model with no content."""
path = path.strip('/')
if 'type' not in model: # pragma: no cover
raise web.HTTPError(400, u'No file type provided')
if ('content' not in model and
model['type'] != 'directory'): # pragma: no cover
raise web.HTTPError(400, u'No file content provided')
self.run_pre_save_hook(model=model, path=path)
os_path = self._get_os_path(path)
self.log.debug("Saving %s", os_path)
try:
if model['type'] == 'notebook':
file_ext = _file_extension(os_path)
nb = nbformat.from_dict(model['content'])
if file_ext == '.ipynb':
self.check_and_sign(nb, path)
self._save_notebook(os_path, nb)
else:
p = self._podoc
lang = p.get_lang_for_file_ext(file_ext)
p.convert(nb,
source='notebook',
target=lang,
resources=None, # TODO
output=os_path,
)
# One checkpoint should always exist for notebooks.
if not self.checkpoints.list_checkpoints(path):
self.create_checkpoint(path)
elif model['type'] == 'file':
# Missing format will be handled internally by _save_file.
self._save_file(os_path, model['content'], model.get('format'))
elif model['type'] == 'directory':
self._save_directory(os_path, model, path)
else: # pragma: no cover
raise web.HTTPError(400, "Unhandled contents type: %s" % model['type']) # noqa
except web.HTTPError: # pragma: no cover
raise
except Exception as e: # pragma: no cover
self.log.error(u'Error while saving file: %s %s', path, e, exc_info=True) # noqa
raise web.HTTPError(500, u'Unexpected error while saving file: %s %s' % (path, e)) # noqa
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
if validation_message: # pragma: no cover
model['message'] = validation_message
self.run_post_save_hook(model=model, os_path=os_path)
return model
def merge_notebooks(base, local, remote):
"""Merge changes introduced by notebooks local and remote from a shared ancestor base.
Return new (partially) merged notebook and unapplied diffs from the local and remote side.
"""
merged, local_conflict_diffs, remote_conflict_diffs = merge(base, local, remote)
merged = nbformat.from_dict(merged)
return merged, local_conflict_diffs, remote_conflict_diffs
def add_codecell(self, code):
self.nb.cells.append(nbformat.from_dict({
"cell_type": "code",
"execution_count": None,
"metadata": {},
"source": code.strip(),
"outputs": []
}))
def save(self, model, path=''):
"""Save the file model and return the model with no content."""
import json
path = path.strip('/')
with self.library_context as l:
b, f = self._file_from_path(l, path)
if 'type' not in model:
raise web.HTTPError(400, u'No file type provided')
if 'content' not in model and model['type'] != 'directory':
raise web.HTTPError(400, u'No file content provided')
self.run_pre_save_hook(model=model, path=f.record.id)
if not f.record.size:
f.record.update_contents(f.default, 'application/json')
else:
f.record.update_contents(json.dumps(model['content']), 'application/json')
try:
if model['type'] == 'notebook':
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
# One checkpoint should always exist for notebooks.
if not self.checkpoints.list_checkpoints(path):
self.create_checkpoint(path)
elif model['type'] == 'file':
pass
elif model['type'] == 'directory':
pass
else:
raise web.HTTPError(400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s', path, e, exc_info=True)
raise web.HTTPError(500, u'Unexpected error while saving file: %s %s' % (path, e))
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
if validation_message:
model['message'] = validation_message
return model
def post(self, *args, **kwargs):
# Given a list of nb cells, save to ipynb format v4
filepath = self.get_argument('filepath')
if filepath[-6:] != '.ipynb':
filepath = '{}.ipynb'.format(filepath)
cells = json.loads(self.request.body)['cells']
nb_cells = []
for cell in cells:
cinput = cell.get('input', '')
coutput = cell.get('output', '')
ctype = cell.get('type')
tmp_cell = {
"cell_type": ctype,
"metadata": {
"collapsed" : False, # whether the output of the cell is collapsed
"autoscroll": "auto", # any of true, false or "auto"
},
"source": cinput,
}
if ctype=='code':
tmp_cell.update({
"execution_count": None,
"outputs": [{
"output_type" : "stream",
"name" : "stdout",
"text" : coutput,
}]
})
nb_cells.append(tmp_cell)
base_nb = {
'metadata': {
'kernelspec': {
'name': 'bash',
"display_name": "Bash",
"language": "bash"
},
"language_info": {
"codemirror_mode": "shell",
"file_extension": ".sh",
"mimetype": "text/x-sh",
"name": "bash"
}
},
'nbformat': 4,
'nbformat_minor': 0,
'cells': nb_cells
}
try:
nbformat.validate(base_nb,version=4)
nb = nbformat.from_dict(base_nb)
nbformat.write(nb,filepath)
self.write({'res':'File saved to {}'.format(filepath)})
except nbformat.ValidationError:
self.set_status(400)
return
def _save_notebook(self, model, key):
nbcontents = from_dict(model['content'])
self.check_and_sign(nbcontents, key)
content = self._nb_encode_b64(nbcontents)
s3file = S3File(key, None, 'application/octet-stream')
self.write_content(content, s3file)
self.validate_notebook_model(model)
return model.get('message')
def write_markdown(self, text):
if self.nb.cells[-1].cell_type != "markdown":
self.nb.cells.append(nbformat.from_dict({
"cell_type": "markdown",
"metadata": {},
"source": []
}))
self.nb.cells[-1].source.append(
text.replace("\n", "\n" + " " * self.indent)
)
def _save_notebook(self, model, path):
"""
Save a notebook.
Returns a validation message.
"""
with fileManager.session_scope() as session:
nb_contents = nbformat.from_dict(model['content'])
self.check_and_sign(nb_contents, path)
self.fm.save_file(path, writes_base64(nb_contents),session)
# It's awkward that this writes to the model instead of returning.
self.validate_notebook_model(model)
return model.get('message')
def compute_imports(self):
if self.lookup is None:
notebook = nbformat.from_dict(self.contents['notebook'])
code = ""
for cell in notebook.cells:
if cell.cell_type == "code":
code += "\n" + cell.source
self.lookup = ImportsLookup()
self.lookup.visit(ast.parse(self.ast_parse(code)))
self.contents['notebook']['metadata']['pixiedust'].update({
"imports": {p[0]:{"version":p[1],"install":p[2]} for p in self.lookup.imports}
})
def save(self, model, path=''):
"""Save the file model and return the model with no content."""
path = path.strip('/')
if 'type' not in model:
raise web.HTTPError(400, u'No file type provided')
if 'content' not in model and model['type'] != 'directory':
raise web.HTTPError(400, u'No file content provided')
self.log.debug("Saving %s", path)
self.run_pre_save_hook(model=model, path=path)
try:
if model['type'] == 'notebook':
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
self._save_notebook(path, nb)
# TODO: decide how to handle checkpoints for non-local fs.
# For now, checkpoint pathing seems to be borked.
# One checkpoint should always exist for notebooks.
# if not self.checkpoints.list_checkpoints(path):
# self.create_checkpoint(path)
elif model['type'] == 'file':
# Missing format will be handled internally by _save_file.
self._save_file(path, model['content'], model.get('format'))
elif model['type'] == 'directory':
self._save_directory(path, model)
else:
raise web.HTTPError(
400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s',
path,
e,
exc_info=True)
raise web.HTTPError(
500, u'Unexpected error while saving file: %s %s' % (path, e))
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
if validation_message:
model['message'] = validation_message
self.run_post_save_hook(model=model, os_path=path)
return model
def test_nb(fn, flags=None):
"Execute tests in notebook in `fn` with `flags`"
os.environ["IN_TEST"] = '1'
if flags is None: flags = []
try:
nb = read_nb(fn)
for f in get_all_flags(nb['cells']):
if f not in flags: return
ep = NoExportPreprocessor(flags, timeout=600, kernel_name='python3')
pnb = nbformat.from_dict(nb)
ep.preprocess(pnb, {})
finally:
os.environ.pop("IN_TEST")
def save(self, model, path):
assert isinstance(path, str)
try:
seahorse_notebook_path = SeahorseNotebookPath.deserialize(path)
except SeahorseNotebookPath.DeserializationFailed as e:
raise web.HTTPError(400, str(e))
if model['type'] != "notebook":
model['message'] = "Cannot save object of type: {}".format(model['type'])
return model
content_json = writes(from_dict(model['content']), NBFORMAT_VERSION)
return self._save_notebook(seahorse_notebook_path, content_json, False)
def make_cell(cell_type, **kwargs):
"""Returns a NotebookNode object populated with kwargs. cell_type should be either 'markdown' or 'code'"""
defaults = dict(
cell_type=cell_type,
metadata={},
source=[],
)
if cell_type == "code":
defaults['execution_count'] = None
defaults['outputs'] = []
defaults.update(kwargs)
return nbformat.from_dict(defaults)
def convert_notebook(notebook_data: dict,
exporter_type: str,
config: dict = None) -> dict:
notebook = nbformat.from_dict(notebook_data)
exporter = create_exporter(exporter_type, config)
body, resources = exporter.from_notebook_node(notebook)
return {
'body': body,
'mime-type': get_mime_response(exporter),
'resources': resources
}
def recombine_output(cell_dir, i, info):
if info in {'stdout', 'stderr'}:
with (cell_dir / ('output%d.txt' % i)).open() as f:
return nbf.v4.new_output('stream', name=info, text=f.read())
elif info == 'error':
with (cell_dir / ('error%d.json' % i)).open() as f:
err_data = json.load(f)
return nbf.v4.new_output('error', **err_data)
else:
m = _exec_result_re.search(info)
if m:
info = info[:-(len(m.group(0)) + 1)]
op = nbf.v4.new_output('execute_result',
execution_count=int(m.group(1)))
else:
op = nbf.v4.new_output('display_data')
mimebundle = {}
for mimetype in info.split(", "):
file = "output{}{}".format(i, _mime_to_ext[mimetype])
if _is_binary(mimetype):
with (cell_dir / file).open('rb') as f:
mimebundle[mimetype] = base64.b64encode(
f.read()).decode('ascii')
else:
with (cell_dir / file).open() as f:
mimebundle[mimetype] = f.read()
op.data = nbf.from_dict(mimebundle)
metadata_file = cell_dir / "output{}-metadata.json".format(i)
if metadata_file.exists():
with metadata_file.open() as f:
op.metadata = nbf.from_dict(json.load(f))
return op
def save(self, model, path=''):
if (model["type"] == "notebook" or path.endswith(".ipynb")):
path = path.strip('/')
nb = nbf.from_dict(model["content"])
directory = pathlib.Path(path + '.exploded')
if directory.exists():
shutil.rmtree(path + '.exploded')
directory.mkdir()
self.log.info(model)
explode(nb, directory)
return self.get(path, content=False)
return super(NBExplodeManager, self).save(model, path)
async def test_save(fetch, contents):
r = await fetch(
'api', 'contents', 'foo/a.ipynb',
method='GET'
)
model = json.loads(r.body.decode())
nbmodel = model['content']
nb = from_dict(nbmodel)
nb.cells.append(new_markdown_cell('Created by test ³'))
nbmodel = {'content': nb, 'type': 'notebook'}
r = await fetch(
'api', 'contents', 'foo/a.ipynb',
method='PUT',
body=json.dumps(nbmodel)
)
# Round trip.
r = await fetch(
'api', 'contents', 'foo/a.ipynb',
method='GET'
)
model = json.loads(r.body.decode())
newnb = from_dict(model['content'])
assert newnb.cells[0].source == 'Created by test ³'
def test_nb(fn, flags=None):
"Execute `nb` (or only the `show_doc` cells) with `metadata`"
os.environ["IN_TEST"] = '1'
try:
nb = read_nb(fn)
all_flag = check_all_flag(nb['cells'])
if all_flag is not None and all_flag not in L(flags): return
mod = find_default_export(nb['cells'])
if mod is not None: nb['cells'].insert(0, _add_import_cell(mod))
ep = NoExportPreprocessor(L(flags), timeout=600, kernel_name='python3')
pnb = nbformat.from_dict(nb)
ep.preprocess(pnb)
finally:
os.environ.pop("IN_TEST")
def post(self, name):
payload = self.request.body.decode('utf-8')
try:
notebook = nbformat.from_dict(json.loads(payload))
pixieapp_model = yield NotebookMgr.instance().publish(name, notebook)
if "url" in pixieapp_model:
server = self.request.protocol + "://" + self.request.host
pixieapp_model["url"] = server + pixieapp_model["url"]
self.set_status(200)
self.write(json.dumps(pixieapp_model))
self.finish()
except Exception as exc:
app_log.error(traceback.print_exc())
raise web.HTTPError(400, u'Publish PixieApp error: {}'.format(exc))
def save(self, model, path):
"""
Save a file or directory model to path.
Should return the saved model with no content. Save implementations
should call self.run_pre_save_hook(model=model, path=path) prior to
writing any data.
"""
path = path.strip('/')
girder_path = self._get_girder_path(path)
if 'type' not in model:
raise web.HTTPError(400, u'No file type provided')
if 'content' not in model and model['type'] != 'directory':
raise web.HTTPError(400, u'No file content provided')
try:
if model['type'] == 'notebook':
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
nb = nbformat.writes(nb, version=nbformat.NO_CONVERT)
self._upload_to_path(nb, 'application/json', 'text',
girder_path)
elif model['type'] == 'file':
self._upload_to_path(model.get('content'),
model.get('mimetype'),
model.get('format'), girder_path)
elif model['type'] == 'directory':
self._create_folders(girder_path)
else:
raise web.HTTPError(
400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s',
path,
e,
exc_info=True)
raise web.HTTPError(
500, u'Unexpected error while saving file: %s %s' % (path, e))
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
model['message'] = validation_message
return model
def extract_title_ipynb(cell0):
source = cell0["source"]
pattern = r"[Tt]itle: (.*)?\n"
match = re.search(pattern, source)
try:
title = match.group(1)
except:
title = "(Lesson title not found)"
newcell = {
'cell_type': 'markdown',
'metadata': {},
'source': '# {}'.format(title)
}
return nbformat.from_dict(newcell)
def test_checkpoints(self):
resp = self.api.read('foo/a.ipynb')
r = self.api.new_checkpoint('foo/a.ipynb')
self.assertEqual(r.status_code, 201)
cp1 = r.json()
self.assertEqual(set(cp1), {'id', 'last_modified'})
self.assertEqual(r.headers['Location'].split('/')[-1], cp1['id'])
# Modify it
nbcontent = json.loads(resp.text)['content']
nb = from_dict(nbcontent)
hcell = new_markdown_cell('Created by test')
nb.cells.append(hcell)
# Save
nbmodel = {'content': nb, 'type': 'notebook'}
resp = self.api.save('foo/a.ipynb', body=json.dumps(nbmodel))
# List checkpoints
cps = self.api.get_checkpoints('foo/a.ipynb').json()
self.assertEqual(cps, [cp1])
nbcontent = self.api.read('foo/a.ipynb').json()['content']
nb = from_dict(nbcontent)
self.assertEqual(nb.cells[0].source, 'Created by test')
# Restore cp1
r = self.api.restore_checkpoint('foo/a.ipynb', cp1['id'])
self.assertEqual(r.status_code, 204)
nbcontent = self.api.read('foo/a.ipynb').json()['content']
nb = from_dict(nbcontent)
self.assertEqual(nb.cells, [])
# Delete cp1
r = self.api.delete_checkpoint('foo/a.ipynb', cp1['id'])
self.assertEqual(r.status_code, 204)
cps = self.api.get_checkpoints('foo/a.ipynb').json()
self.assertEqual(cps, [])
def test_checkpoints(self):
resp = self.api.read('foo/a.ipynb')
r = self.api.new_checkpoint('foo/a.ipynb')
self.assertEqual(r.status_code, 201)
cp1 = r.json()
self.assertEqual(set(cp1), {'id', 'last_modified'})
self.assertEqual(r.headers['Location'].split('/')[-1], cp1['id'])
# Modify it
nbcontent = json.loads(resp.text)['content']
nb = from_dict(nbcontent)
hcell = new_markdown_cell('Created by test')
nb.cells.append(hcell)
# Save
nbmodel= {'content': nb, 'type': 'notebook'}
resp = self.api.save('foo/a.ipynb', body=json.dumps(nbmodel))
# List checkpoints
cps = self.api.get_checkpoints('foo/a.ipynb').json()
self.assertEqual(cps, [cp1])
nbcontent = self.api.read('foo/a.ipynb').json()['content']
nb = from_dict(nbcontent)
self.assertEqual(nb.cells[0].source, 'Created by test')
# Restore cp1
r = self.api.restore_checkpoint('foo/a.ipynb', cp1['id'])
self.assertEqual(r.status_code, 204)
nbcontent = self.api.read('foo/a.ipynb').json()['content']
nb = from_dict(nbcontent)
self.assertEqual(nb.cells, [])
# Delete cp1
r = self.api.delete_checkpoint('foo/a.ipynb', cp1['id'])
self.assertEqual(r.status_code, 204)
cps = self.api.get_checkpoints('foo/a.ipynb').json()
self.assertEqual(cps, [])
def to_nb_json(content, version_specific=False):
if not version_specific:
return nbformat.from_dict(content)
else:
# Not sure why this is needed instead of from_dict, sometimes
versions = {
1: v1,
2: v2,
3: v3,
4: v4,
}
major = content.get('nbformat', 1)
minor = content.get('nbformat_minor', 0)
nb = versions[major].to_notebook_json(content, minor=minor)
return nb
def save_notebook(self, model, name='', path=''):
"""Save the notebook model and return the model with no content."""
path = path.strip('/')
if 'content' not in model:
raise web.HTTPError(400, u'No notebook JSON data provided')
if not path:
raise web.HTTPError(400, u'We require path for saving.')
nb = nbformat.from_dict(model['content'])
gist = self._get_gist(name, path)
if gist is None:
tags = parse_tags(name)
if path:
tags.append(path)
content = nbformat.writes(nb, version=nbformat.NO_CONVERT)
gist = self.gisthub.create_gist(name, tags, content)
# One checkpoint should always exist
#if self.notebook_exists(name, path) and not self.list_checkpoints(name, path):
# self.create_checkpoint(name, path)
new_path = model.get('path', path).strip('/')
new_name = model.get('name', name)
if path != new_path:
raise web.HTTPError(400, u'Gist backend does not support path change')
# remove [gist_id] if we're being sent old key_name
gist.name = gist.strip_gist_id(new_name)
gist.notebook_content = nb
self.check_and_sign(nb, self.fullpath(new_path, new_name))
if 'name' in nb['metadata']:
nb['metadata']['name'] = u''
try:
self.log.debug("Autosaving notebook %s %s", path, name)
self.gisthub.save(gist)
except Exception as e:
raise web.HTTPError(400, u'Unexpected error while autosaving notebook: %s %s %s' % (path, name, e))
# NOTE: since gist.name might not have [gist_id] suffix on rename
# we use gist.key_name
model = self.get_notebook(gist.key_name, new_path, content=False)
return model
def get_references(self):
"""
Get references in all the cells and build a bibliography in the
last cell.
"""
logger.info(' Rewriting references')
for cell in self.cells:
if cell.cell_type == 'markdown':
cell.find_reference_keys(self.refs, keys=self.keys)
if '## References' in self.cells[-1].source:
self.cells = self.cells[:-1]
if self.keys:
self.cells.append(JupyterCell.as_references(self.refs, self.keys))
self.contents['cells'] = [c.to_dict() for c in self.cells]
self.contents = nbformat.from_dict(self.contents)
def save(self, model, path=""):
"""Save the file model and return the model with no content."""
path = path.strip("/")
if "type" not in model:
raise web.HTTPError(400, u"No file type provided")
if "content" not in model and model["type"] != "directory":
raise web.HTTPError(400, u"No file content provided")
os_path = self._get_os_path(path)
self.log.debug("Saving %s", os_path)
self.run_pre_save_hook(model=model, path=path)
try:
if model["type"] == "notebook":
nb = nbformat.from_dict(model["content"])
self.check_and_sign(nb, path)
self._save_notebook(os_path, nb)
# One checkpoint should always exist for notebooks.
if not self.checkpoints.list_checkpoints(path):
self.create_checkpoint(path)
elif model["type"] == "file":
# Missing format will be handled internally by _save_file.
self._save_file(os_path, model["content"], model.get("format"))
elif model["type"] == "directory":
self._save_directory(os_path, model, path)
else:
raise web.HTTPError(400, "Unhandled contents type: %s" % model["type"])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u"Error while saving file: %s %s", path, e, exc_info=True)
raise web.HTTPError(500, u"Unexpected error while saving file: %s %s" % (path, e))
validation_message = None
if model["type"] == "notebook":
self.validate_notebook_model(model)
validation_message = model.get("message", None)
model = self.get(path, content=False)
if validation_message:
model["message"] = validation_message
self.run_post_save_hook(model=model, os_path=os_path)
return model
def save(self, model, path):
"""
save an entry in the store
this is called by the contents engine to store a notebook
"""
om = self.omega
path = unquote(path).strip('/')
type = model.get('type')
name = model.get('name')
self.run_pre_save_hook(model=model, path=path)
if type is None:
raise web.HTTPError(400, u'No file type provided')
try:
if type == 'notebook':
content = model.get('content')
if content is None:
raise web.HTTPError(400, u'No file content provided')
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
self.omega.jobs.put(nb, path)
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False, type=type)
if validation_message:
model['message'] = validation_message
elif type == 'directory':
ph_name = '{path}/{self._dir_placeholder}'.format(
**locals()).strip('/')
self.omega.jobs.create("#placeholder", ph_name)
model = self.get(path, content=False, type=type)
model['content'] = None
model['format'] = None
validation_message = None
else:
raise web.HTTPError(
400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s',
path,
e,
exc_info=True)
raise web.HTTPError(
500, u'Unexpected error while saving file: %s %s' % (path, e))
return model
def save(self, model, path=''):
"""Save the file model and return the model with no content."""
path = path.strip('/')
if 'type' not in model:
raise web.HTTPError(400, u'No file type provided')
if 'content' not in model and model['type'] != 'directory':
raise web.HTTPError(400, u'No file content provided')
os_path = self._get_os_path(path)
self.log.debug("Saving %s", os_path)
self.run_pre_save_hook(model=model, path=path)
try:
if model['type'] == 'notebook':
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
self._save_notebook(os_path, nb)
# One checkpoint should always exist for notebooks.
if not self.checkpoints.list_checkpoints(path):
self.create_checkpoint(path)
elif model['type'] == 'file':
# Missing format will be handled internally by _save_file.
self._save_file(os_path, model['content'], model.get('format'))
elif model['type'] == 'directory':
self._save_directory(os_path, model, path)
else:
raise web.HTTPError(400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s', path, e, exc_info=True)
raise web.HTTPError(500, u'Unexpected error while saving file: %s %s' % (path, e))
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
if validation_message:
model['message'] = validation_message
self.run_post_save_hook(model=model, os_path=os_path)
return model
def recombine(directory):
directory = pathlib.Path(directory)
with (directory / 'metadata.json').open() as f:
metadata = json.load(f)
nb = nbf.v4.new_notebook(metadata=metadata)
with (directory / 'cells_sequence').open() as f:
cells_sequence = f.read().splitlines()
for cell_id in cells_sequence:
cell_dir = directory / cell_id
source_file = list(cell_dir.glob('source.*'))[0]
if source_file.suffix == '.md':
with source_file.open() as f:
cell = nbf.v4.new_markdown_cell(f.read())
elif source_file.suffix == '.txt':
with source_file.open() as f:
cell = nbf.NotebookNode(cell_type='raw',
source=f.read(),
metadata=nbf.NotebookNode())
else:
with source_file.open() as f:
cell = nbf.v4.new_code_cell(f.read())
nb.cells.append(cell)
if (cell_dir / 'metadata.json').exists():
with (cell_dir / 'metadata.json').open() as f:
cell.metadata = nbf.from_dict(json.load(f))
cell.metadata['nbexplode_cell_id'] = cell_id
if not (cell_dir / 'outputs_sequence').exists():
continue
with (cell_dir / 'outputs_sequence').open() as f:
outputs_seq = f.read().splitlines()
cell.outputs = [
recombine_output(cell_dir, i, info)
for (i, info) in enumerate(outputs_seq, start=1)
]
return nb
def test_reporting(line, title, input, expected):
dct = yaml.safe_load(input)
dct.setdefault("metadata", {})
ntbk = nbformat.from_dict(dct)
md, env, tokens = nb_to_tokens(ntbk, MdParserConfig(), "default")
document = make_document("source/path")
messages = []
def observer(msg_node):
if msg_node["level"] > 1:
messages.append(msg_node.astext())
document.reporter.attach_observer(observer)
with mock_sphinx_env(document=document):
tokens_to_docutils(md, env, tokens, document)
assert "\n".join(messages).rstrip() == expected.rstrip()
def save(self, model, path):
"""Save the file or directory and return the model with no content.
Save implementations should call self.run_pre_save_hook(model=model, path=path)
prior to writing any data.
"""
path = path.strip('/')
if 'type' not in model:
raise HTTPError(400, u'No IPython model type provided')
if model['type'] != 'notebook':
raise HTTPError(400,
u'We currently only support saving Narratives!')
if 'content' not in model and model['type'] != 'directory':
raise HTTPError(
400, u'No Narrative content found while trying to save')
self.log.debug(u"writing Narrative %s." % path)
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
try:
result = self.write_narrative(self._obj_ref_from_path(path), nb,
self.get_userid())
new_id = u"ws.%s.obj.%s" % (result[1], result[2])
util.kbase_env.narrative = new_id
nb = result[0]
self.validate_notebook_model(model)
validation_message = model.get(u'message', None)
model = self.get(path, content=False)
if validation_message:
model[u'message'] = validation_message
self.narrative_logger.narrative_save(
u'{}/{}'.format(result[1], result[2]), result[3])
return model
except PermissionsError as err:
raise HTTPError(403, err.message)
except Exception as err:
raise HTTPError(
500,
u'An error occurred while saving your Narrative: {}'.format(
err))
def main_merge(args):
bfn = args.base
lfn = args.local
rfn = args.remote
mfn = args.output
for fn in (bfn, lfn, rfn):
if not os.path.exists(fn):
print("Cannot find file '{}'".format(fn))
return 1
b = nbformat.read(bfn, as_version=4)
l = nbformat.read(lfn, as_version=4)
r = nbformat.read(rfn, as_version=4)
m, decisions = merge_notebooks(b, l, r, args)
conflicted = [d for d in decisions if d.conflict]
returncode = 1 if conflicted else 0
if conflicted:
print("Conflicts occured during merge operation.")
else:
print("Merge completed successfully with no unresolvable conflicts.")
if mfn:
# Add remaining conflicts to metadata
if conflicted:
m["metadata"]["nbdime-conflicts"] = conflicted
# Write partial or fully completed merge to given foo.ipynb filename
with open(mfn, "wb") as mf:
# FIXME: We currently write this way as git needs \n line endings,
# when used as merge driver. However, we should write using OS
# line endings otherwise.
nb = nbformat.from_dict(m)
s = nbformat.writes(nb) + u'\n'
mf.write(s.encode())
else:
# FIXME: Display conflicts in a useful way
if conflicted:
print("Conflicts:")
pprint(conflicted)
print("Merge result:")
pprint(m)
return returncode
def run_notebook(notebook, root_path=".", timeout=30, prerun=None):
"""Run a notebook in Jupyter
This function will copy all of the files in ``root_path`` to a
temporary directory, run the notebook and then return a
``NotebookResult`` object containing the outputs for each cell.
The notebook is run in a separate process and only objects that
are serializable will be returned in their entirety, otherwise
the string representation will be returned instead.
Parameters
----------
notebook : str
The notebook to run relative to ``root_path``
root_path : str
The root notebook folder (default ".")
timeout : int
Length of time to run the notebook in seconds (default 30)
prerun : function
Function to run prior to starting the notebook, takes the
temporary copy of root_path as a parameter
"""
import nbformat
from nbconvert.preprocessors import ExecutePreprocessor
with tempfile.TemporaryDirectory() as td:
workdir = os.path.join(td, 'work')
notebook_dir = os.path.join(workdir, os.path.dirname(notebook))
shutil.copytree(root_path, workdir)
if prerun is not None:
prerun(workdir)
fullpath = os.path.join(workdir, notebook)
with open(fullpath, "r") as f:
nb = nbformat.read(f, as_version=4)
ep = ExecutePreprocessor(kernel_name='python3', timeout=timeout)
code_cells = [c for c in nb['cells'] if c['cell_type'] == 'code']
nb['cells'].append(
nbformat.from_dict({
'cell_type': 'code',
'metadata': {},
'source': _create_code(len(code_cells))
}))
ep.preprocess(nb, {'metadata': {'path': notebook_dir}})
return NotebookResult(nb)
def _nb_node_from_nb_node_and_cells(nb_node: nbformat.NotebookNode,
cells: Union[nbformat.NotebookNode, List[nbformat.NotebookNode]]
) -> nbformat.NotebookNode:
if not isinstance(cells, list):
cells = [cells]
# get other data from original notebook
nb_dict = dict(
cells=cells,
metadata=nb_node['metadata'],
nbformat=nb_node['nbformat'],
nbformat_minor=nb_node['nbformat_minor']
)
nbformat.validate(nb_dict)
small_nb = nbformat.from_dict(nb_dict)
return small_nb
def _save_notebook(self, db, model, path):
"""
Save a notebook.
Returns a validation message.
"""
nb_contents = from_dict(model['content'])
self.check_and_sign(nb_contents, path)
save_file(
db,
self.user_id,
path,
writes_base64(nb_contents),
self.max_file_size_bytes,
)
# It's awkward that this writes to the model instead of returning.
self.validate_notebook_model(model)
return model.get('message')
def merge_notebooks(base, local, remote, args):
"""Merge changes introduced by notebooks local and remote from a shared ancestor base.
Return new (partially) merged notebook and unapplied diffs from the local and remote side.
"""
# Compute notebook specific diffs
local_diffs = diff_notebooks(base, local)
remote_diffs = diff_notebooks(base, remote)
# Execute a generic merge operation
merged, local_diffs, remote_diffs = merge_with_diff(base, local, remote, local_diffs, remote_diffs)
# Try to resolve conflicts based on behavioural options
resolved, local_diffs, remote_diffs = \
autoresolve_notebook_conflicts(merged, local_diffs, remote_diffs, args)
resolved = nbformat.from_dict(resolved)
return resolved, local_diffs, remote_diffs
def compute_imports(self):
if self.lookup is None:
notebook = nbformat.from_dict(self.contents['notebook'])
code = ""
for cell in notebook.cells:
if cell.cell_type == "code":
code += "\n" + cell.source
self.lookup = ImportsLookup()
self.lookup.visit(ast.parse(self.ast_parse(code)))
self.contents['notebook']['metadata']['pixiedust'].update({
"imports": {
p[0]: {
"version": p[1],
"install": p[2]
}
for p in self.lookup.imports
}
})
def __init__(self, document, app, docpath):
nodes.NodeVisitor.__init__(self, document)
self.section_level = 0
self.indent = 0
self.paragraph_prefix = ""
self.app = app
self.config = app.config
self.docpath = docpath
self.nb = nbformat.from_dict({
"cells": [],
"metadata": {},
"nbformat": nbformat.current_nbformat,
"nbformat_minor": nbformat.current_nbformat_minor
})
if self.config.nbexport_pre_code:
self.write_code(self.config.nbexport_pre_code)
def overwrite(self, model, path):
"""Overwrite a model back to the original function
"""
resource = self._get(path)
resource.interactive.overwrite(nbformat.from_dict(model['content']))
return {
'name': resource.task.name,
'type': 'notebook',
'path': path,
'writable': True,
'created': datetime.datetime.now(),
'last_modified': datetime.datetime.now(),
'content': None,
'mimetype': 'text/x-python',
'format': None,
}
def contribution(request, collection, cid):
material = {}
if request.user.is_authenticated():
API_KEY = request.user.api_key
ENDPOINT = request.build_absolute_uri(get_endpoint())
with MPContribsRester(API_KEY, endpoint=ENDPOINT) as mpr:
material = mpr.query_contributions(criteria={'_id': ObjectId(cid)},
collection=collection,
projection={'_id': 0})[0]
material['nb'], material['nb_js'] = export_notebook(
nbformat.from_dict(material['nb']),
cid,
set_div_names=False,
separate_script=True)
material['detail_id'] = collection[:-1]
ctx = RequestContext(request, {'material': jsanitize(material)})
return render_to_response("mpcontribs_explorer_contribution.html",
locals(), ctx)
def merge_notebooks(base, local, remote, args):
"""Merge changes introduced by notebooks local and remote from a shared ancestor base.
Return new (partially) merged notebook and unapplied diffs from the local and remote side.
"""
# Compute notebook specific diffs
local_diffs = diff_notebooks(base, local)
remote_diffs = diff_notebooks(base, remote)
# Execute a generic merge operation
merged, local_diffs, remote_diffs = merge_with_diff(
base, local, remote, local_diffs, remote_diffs)
# Try to resolve conflicts based on behavioural options
resolved, local_diffs, remote_diffs = \
autoresolve_notebook_conflicts(merged, local_diffs, remote_diffs, args)
resolved = nbformat.from_dict(resolved)
return resolved, local_diffs, remote_diffs
def save(self, model, path):
"""
save an entry in the store
this is called by the contents engine to store a notebook
"""
path = path.strip('/')
if 'type' not in model:
raise web.HTTPError(400, u'No file type provided')
if 'content' not in model and model['type'] != 'directory':
raise web.HTTPError(400, u'No file content provided')
self.run_pre_save_hook(model=model, path=path)
om = self.omega
try:
if model['type'] == 'notebook':
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
self.omega.jobs.put(nb, path)
else:
raise web.HTTPError(
400, "Unhandled contents type: %s" % model['type'])
except web.HTTPError:
raise
except Exception as e:
self.log.error(u'Error while saving file: %s %s',
path,
e,
exc_info=True)
raise web.HTTPError(
500, u'Unexpected error while saving file: %s %s' % (path, e))
validation_message = None
if model['type'] == 'notebook':
self.validate_notebook_model(model)
validation_message = model.get('message', None)
model = self.get(path, content=False)
if validation_message:
model['message'] = validation_message
return model
def _code_to_notebook(self, code, path):
import nbformat
nb = nbformat.v4.new_notebook()
for m in re.finditer(NOTEBOOK_PATTERN, code, re.MULTILINE | re.DOTALL):
cell = {
'cell_type': m.group('cell_type'),
'source': m.group('source'),
'metadata': {}
}
if m.group('cell_type') == 'code':
cell['execution_count'] = 0
cell['outputs'] = []
elif m.group('cell_type') == 'markdown':
cell['source'] = \
cell['source'].lstrip(u'"""\n').rstrip(u'\n"""')
nb['cells'].append(nbformat.from_dict(cell))
nbformat.write(nb, path)
def test_image_mimetype_uri(doctree):
# tests the image uri paths on conversion to docutils image nodes
priority = ['image/png', 'image/jpeg', 'text/latex', 'text/plain']
output_dir = '/_build/jupyter_execute'
img_locs = [
'/_build/jupyter_execute/docs/image_1.png',
'/_build/jupyter_execute/image_2.png'
]
cells = [{
'outputs': [{
'data': {
'image/png': 'Vxb6L1wAAAABJRU5ErkJggg==\n',
'text/plain': '<Figure size 432x288 with 1 Axes>'
},
'metadata': {
'filenames': {
'image/png': img_locs[0]
}
},
'output_type': 'display_data'
}]
}, {
'outputs': [{
'data': {
'image/png': 'iVBOJggg==\n',
'text/plain': '<Figure size 432x288 with 1 Axes>'
},
'metadata': {
'filenames': {
'image/png': img_locs[1]
}
},
'output_type': 'display_data'
}]
}]
for index, cell in enumerate(cells):
cell = from_dict(cell)
output_node = cell_output_to_nodes(cell, priority, True, output_dir,
None)
assert output_node[0].attributes['uri'] == img_locs[index]
def export_notebook(nb, cid):
nb = nbformat.from_dict(nb)
html_exporter = HTMLExporter()
html_exporter.template_file = 'basic'
body = html_exporter.from_notebook_node(nb)[0]
soup = BeautifulSoup(body, 'html.parser')
# mark cells with special name for toggling, and
# TODO make element id's unique by appending cid
for div in soup.find_all('div', 'output_wrapper'):
tag = div.find('h2')
div['name'] = tag.text.split()[0]
# name divs for toggling code_cells
for div in soup.find_all('div', 'input'):
div['name'] = 'Input'
# separate script
script = []
for s in soup.find_all('script'):
script.append(s.text)
s.extract() # remove javascript
return soup.prettify(), '\n'.join(script)
def test_nosource_with_output(self):
"""
Test that the check_conditions returns true when given a code-cell
that has non-empty outputs but no source.
"""
cell = {
'cell_type': 'code',
'execution_count': 2,
'metadata': {},
'outputs': [{
'name': 'stdout',
'output_type': 'stream',
'text': 'I exist.\n'
}],
'source': ''
}
preprocessor = self.build_preprocessor()
node = from_dict(cell)
assert preprocessor.check_conditions(node)
def post(self):
# I don't think we want to accept arbitrary filenames
# to write to from the http request, only allowing
# this operation if the server was run with an output
# filename as a commandline argument:
fn = self.params.get("outputfilename", None)
if not fn:
raise web.HTTPError(400, "Server does not accept storing merge result.")
path = os.path.join(self.params["cwd"], fn)
nbdime.log.info("Saving merge result in %s", path)
body = json.loads(escape.to_unicode(self.request.body))
merged = body["merged"]
merged_nb = nbformat.from_dict(merged)
# Somehow store unsolved conflicts?
# conflicts = body["conflicts"]
with io.open(path, "w", encoding="utf8") as f:
nbformat.write(merged_nb, f)
self.finish()
def post(self, format):
exporter = get_exporter(format, config=self.config)
model = self.get_json_body()
name = model.get('name', 'notebook.ipynb')
nbnode = from_dict(model['content'])
try:
output, resources = exporter.from_notebook_node(nbnode)
except Exception as e:
raise web.HTTPError(500, "nbconvert failed: %s" % e)
if respond_zip(self, name, output, resources):
return
# MIME type
if exporter.output_mimetype:
self.set_header('Content-Type',
'%s; charset=utf-8' % exporter.output_mimetype)
self.finish(output)
def save(self, model, path):
"""Save the file or directory and return the model with no content.
Save implementations should call self.run_pre_save_hook(model=model, path=path)
prior to writing any data.
"""
path = path.strip("/")
match = self.ws_regex.match(path)
if "type" not in model:
raise HTTPError(400, u"No IPython model type provided")
if model["type"] != "notebook":
raise HTTPError(400, u"We currently only support saving Narratives!")
if "content" not in model and model["type"] != "directory":
raise HTTPError(400, u"No Narrative content found while trying to save")
self.log.debug(u"writing Narrative %s." % path)
nb = nbformat.from_dict(model["content"])
self.check_and_sign(nb, path)
try:
result = self.write_narrative(self._obj_ref_from_path(path), nb, self.get_userid())
new_id = u"ws.%s.obj.%s" % (result[1], result[2])
util.kbase_env.narrative = new_id
nb = result[0]
self.validate_notebook_model(model)
validation_message = model.get(u"message", None)
model = self.get(path, content=False)
if validation_message:
model[u"message"] = validation_message
return model
except PermissionsError as err:
raise HTTPError(403, err.message)
except Exception as err:
raise HTTPError(500, u"An error occurred while saving your Narrative: {}".format(err))
def save(self, model, path):
"""Save the file or directory and return the model with no content.
Save implementations should call self.run_pre_save_hook(model=model, path=path)
prior to writing any data.
"""
path = path.strip('/')
if 'type' not in model:
raise HTTPError(400, u'No IPython model type provided')
if model['type'] != 'notebook':
raise HTTPError(400, u'We currently only support saving Narratives!')
if 'content' not in model and model['type'] != 'directory':
raise HTTPError(400, u'No Narrative content found while trying to save')
self.log.debug(u"writing Narrative %s." % path)
nb = nbformat.from_dict(model['content'])
self.check_and_sign(nb, path)
try:
ref = self._parse_path(path)
result = self.write_narrative(ref, nb, self.get_userid())
new_id = u"ws.%s.obj.%s" % (result[1], result[2])
util.kbase_env.narrative = new_id
nb = result[0]
self.validate_notebook_model(model)
validation_message = model.get(u'message', None)
model = self.get(path, content=False)
if validation_message:
model[u'message'] = validation_message
self.narrative_logger.narrative_save(u'{}/{}'.format(result[1], result[2]), result[3])
return model
except WorkspaceError as err:
raise HTTPError(err.http_code, "While saving your Narrative: {}".format(err.message))