def main():
#print dir(hello)
import sys
print sys.modules['__main__'].__file__
a = nesoni.future(func, 'a', [])
b = nesoni.future(func, 'b', [])
c = nesoni.future(func, 'c', [a, b])
d = nesoni.future(func, 'd', [a, b])
c()
d()
#print legion.coordinator().get_cores()
#legion.coordinator().job(hello)
with Timer('100 status updates'):
for i in xrange(100):
grace.status(str(i))
grace.status('')
with Timer('100 parallel threads'):
@nesoni.thread_for(xrange(100))
def loop(i):
pass
with Timer('100 parallel processes'):
nesoni.parallel_for(xrange(100))(do_nothing)
with Timer('100 parallel processes updating statuses'):
nesoni.parallel_for(xrange(100))(do_status)
def main():
#print dir(hello)
import sys
print sys.modules['__main__'].__file__
a = nesoni.future(func,'a',[])
b = nesoni.future(func,'b',[])
c = nesoni.future(func,'c',[a,b])
d = nesoni.future(func,'d',[a,b])
c()
d()
#print legion.coordinator().get_cores()
#legion.coordinator().job(hello)
with Timer('100 status updates'):
for i in xrange(100):
grace.status(str(i))
grace.status('')
with Timer('100 parallel threads'):
@nesoni.thread_for(xrange(100))
def loop(i):
pass
with Timer('100 parallel processes'):
nesoni.parallel_for(xrange(100))(do_nothing)
with Timer('100 parallel processes updating statuses'):
nesoni.parallel_for(xrange(100))(do_status)
def depth_test(self, ref, variant, others=[]):
depths = range(1, 30 + 1)
#results = [ self.tryout(ref, ['%sx%d'%(variant,i)] + others) for i in depths ]
result_futures = [
nesoni.future(self.tryout, ref, ['%sx%d' % (variant, i)] + others)
for i in depths
]
results = [item() for item in result_futures]
report = '%s -> %s' % (ref or '-', variant or '-')
if others: report += ' with contamination ' + ', '.join(others)
report += '\n'
if self.legacy:
report += 'nesoni consensus: [' + ''.join(
'+' if item[1] else 'X' if item[0] else ' '
for item in results) + ']\n'
report += 'VCF pipeline [' + ''.join(
'+' if item[3] else 'X' if item[2] else ' '
for item in results) + ']\n'
depth_line = ''
for i in depths:
if i == 1 or i % 5 == 0:
depth_line += ' ' * (i - len(depth_line)) + str(i)
report += 'depth ' + depth_line + '\n'
return report
def depth_test(self, ref, variant, others=[]):
depths = range(1,30+1)
#results = [ self.tryout(ref, ['%sx%d'%(variant,i)] + others) for i in depths ]
result_futures = [ nesoni.future(self.tryout, ref, ['%sx%d'%(variant,i)] + others) for i in depths ]
results = [ item() for item in result_futures ]
report = '%s -> %s' % (ref or '-', variant or '-')
if others: report += ' with contamination ' + ', '.join(others)
report += '\n'
if self.legacy:
report += 'nesoni consensus: [' + ''.join( '+' if item[1] else 'X' if item[0] else ' ' for item in results ) + ']\n'
report += 'VCF pipeline [' + ''.join( '+' if item[3] else 'X' if item[2] else ' ' for item in results ) + ']\n'
depth_line = ''
for i in depths:
if i == 1 or i % 5 == 0:
depth_line += ' '*(i-len(depth_line)) + str(i)
report += 'depth '+depth_line+'\n'
return report
def run(self):
f = nesoni.future(self.hello)
print f()
def run(self):
f = nesoni.future(self.hello)
print f()
