def test_map_fn():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric='wc -l', n=20, ncpus=map)
assert isinstance(res, basestring)
yield check_attributes, res
from itertools import imap
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric='wc -l', n=20, ncpus=imap)
assert isinstance(res, basestring)
yield check_attributes, res
def test_map_fn():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric='wc -l', n=20, ncpus=map)
assert isinstance(res, basestring)
yield check_attributes, res
from itertools import imap
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric='wc -l', n=20, ncpus=imap)
assert isinstance(res, basestring)
yield check_attributes, res
def test_local():
res = poverlap('test/data/a.bed',
'test/data/b.bed',
'data/hg19.genome',
shuffle_loc=100,
n=20)
assert isinstance(res, basestring)
yield check_attributes, res
def test_string_metric():
res = poverlap('test/data/a.bed',
'test/data/b.bed',
'data/hg19.genome',
metric='wc -l',
n=20)
assert isinstance(res, basestring)
yield check_attributes, res
def test_multi_metric():
res = poverlap('test/data/a.bed',
'test/data/b.bed',
'data/hg19.genome',
metric=('wc -l', mymetric),
n=20,
ncpus=2)
assert isinstance(res, basestring)
d = json.loads(res)
assert len(d) == 2, d
def test_multi_metric():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric=('wc -l', mymetric), n=20, ncpus=2)
assert isinstance(res, basestring)
d = json.loads(res)
assert len(d) == 2, d
def test_cpu_count():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
metric='wc -l', n=20, ncpus=2)
assert isinstance(res, basestring)
yield check_attributes, res
def test_local():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome',
shuffle_loc=100, n=20)
assert isinstance(res, basestring)
yield check_attributes, res
def test_python_metric():
res = poverlap('test/data/a.bed', 'test/data/b.bed', 'data/hg19.genome', metric=mymetric, n=20)
assert isinstance(res, basestring)
yield check_attributes, res