def getScoreListFromFile( inFile ):
lScores = []
inFileHandler = open( inFile, "r" )
iAlign = Align()
while True:
line = inFileHandler.readline()
if line == "":
break
iAlign.reset()
iAlign.setFromString( line )
lScores.append( iAlign.score )
inFileHandler.close()
return lScores
def updateScoresInFile( inFile, outFile ):
inHandler = open( inFile, "r" )
outHandler = open( outFile, "w" )
iAlign = Align()
while True:
line = inHandler.readline()
if line == "":
break
iAlign.reset()
iAlign.setFromString( line, "\t" )
iAlign.updateScore()
iAlign.write( outHandler )
inHandler.close()
outHandler.close()
def reset(self):
self.id = -1
Align.reset(self)
