def test_rogerstager(self):
from Bio.Seq import Seq
from Bio.Restriction import BsaI
answ = []
answ.append(Dseq('aaaaaaaaaaaaggtctca', 'ttttttttccagagttttt'[::-1]))
answ.append(Dseq('aaaaaaaaaggtctca', 'tttttccagagttttt'[::-1]))
tests = [Seq("aaaaaaggtctcaaaaaaa"), Seq("aaaaaaggtctcaaaa")]
for s in tests:
d = Dseqrecord(s).looped()
for f in d.cut(BsaI):
a = answ.pop(0)
self.assertTrue(f.seq.watson == a.watson)
self.assertTrue(f.seq.crick == a.crick)
self.assertTrue(f.seq.ovhg == a.ovhg)
self.assertTrue(eq(f.seq, a))
def test_rogerstager(self):
from Bio.Seq import Seq
from Bio.Restriction import BsaI
answ = []
answ.append( Dseq('aaaaaaaaaaaaggtctca', 'ttttttttccagagttttt'[::-1]) )
answ.append( Dseq('aaaaaaaaaggtctca', 'tttttccagagttttt'[::-1]) )
tests = [Seq("aaaaaaggtctcaaaaaaa"),
Seq("aaaaaaggtctcaaaa") ]
for s in tests:
d = Dseqrecord(s).looped()
for f in d.cut(BsaI):
a = answ.pop(0)
self.assertTrue( f.seq.watson == a.watson )
self.assertTrue( f.seq.crick == a.crick )
self.assertTrue( f.seq.ovhg == a.ovhg )
self.assertTrue( eq(f.seq, a) )
