def display(self, imagesets, reflections, crystals=None):
import wx
from dials.util.spotfinder_frame import SpotFrame
app = wx.App()
self.frame = SpotFrame(None,
-1,
"X-ray image display",
size=(800, 720),
pos=(100, 100),
params=self.params,
imagesets=imagesets,
reflections=reflections,
crystals=crystals)
self.frame.SetSize((1024, 780))
self.frame.Show()
from rstbx.slip_viewer.frame import chooser_wrapper
for imageset in imagesets:
for idx in xrange(len(imageset.indices())):
self.frame.add_file_name_or_data(chooser_wrapper(
imageset, idx))
self.frame.load_image(chooser_wrapper(imagesets[0], 0))
app.MainLoop()
def display(self, imagesets, reflections, crystals=None):
import wx
from dials.util.spotfinder_frame import SpotFrame
app = wx.App()
self.frame = SpotFrame(None, -1, "X-ray image display", size=(800,720),
pos=(100,100),
params=self.params,
imagesets=imagesets,
reflections=reflections,
crystals=crystals)
self.frame.SetSize((1024,780))
self.frame.Show()
from rstbx.slip_viewer.frame import chooser_wrapper
for imageset in imagesets:
for idx in xrange(len(imageset.indices())):
self.frame.add_file_name_or_data(chooser_wrapper(imageset, idx))
self.frame.load_image(chooser_wrapper(imagesets[0], 0))
app.MainLoop()
def run(argv=None):
if (argv is None):
argv = sys.argv
# XXX Could/should handle effective metrology the same way, except
# it does not have a single scope.
work_phil = phil.process_command_line(args=argv[1:],
master_string=master_str + phil_str +
additional_spotfinder_phil_defs)
work_params = work_phil.work.extract()
app = wx.App(0)
wx.SystemOptions.SetOptionInt("osx.openfiledialog.always-show-types", 1)
frame = XrayFrame(None, -1, "X-ray image display", size=(800, 720))
frame.Show()
# show settings panel
frame.OnShowSettings(None)
frame.settings_frame.panel.center_ctrl.SetValue(work_params.beam_center)
frame.settings_frame.panel.integ_ctrl.SetValue(
work_params.show_integration_results)
frame.settings_frame.panel.spots_ctrl.SetValue(
work_params.show_spotfinder_results)
frame.settings.show_effective_tiling = work_params.show_effective_tiling
frame.settings_frame.panel.collect_values()
if (work_params.effective_metrology is not None):
from xfel.cftbx.detector.metrology import \
master_phil, metrology_as_transformation_matrices
stream = open(work_params.effective_metrology)
metrology_phil = master_phil.fetch(sources=[phil.parse(stream.read())])
stream.close()
frame.metrology_matrices = metrology_as_transformation_matrices(
metrology_phil.extract())
# Update initial settings with values from the command line. Needs
# to be done before image is loaded (but after the frame is
# instantiated).
frame.params = work_params
frame.init_pyslip()
frame.pyslip.tiles.user_requests_antialiasing = work_params.anti_aliasing
frame.pyslip.tiles.show_untrusted = frame.params.show_untrusted
paths = work_phil.remaining_args
if (len(paths) == 1 and os.path.basename(paths[0]) == "DISTL_pickle"):
assert os.path.isfile(paths[0])
frame.load_distl_output(paths[0])
elif (len(paths) > 0):
frame.CHOOSER_SIZE = 1500
# from dxtbx.imageset import ImageSetFactory
# sets = ImageSetFactory.new(paths)
from dxtbx.model.experiment_list import ExperimentListFactory
from rstbx.slip_viewer.frame import chooser_wrapper
experiments = ExperimentListFactory.from_filenames(paths)
sets = experiments.imagesets()
for imgset in sets:
for idx in imgset.indices():
frame.add_file_name_or_data(chooser_wrapper(imgset, idx))
idx = sets[0].indices()[0]
frame.load_image(chooser_wrapper(sets[0], idx))
app.MainLoop()
return 0
def run(argv=None):
if (argv is None):
argv = sys.argv
# XXX Could/should handle effective metrology the same way, except
# it does not have a single scope.
work_phil = phil.process_command_line(
args=argv[1:],
master_string=master_str + phil_str + additional_spotfinder_phil_defs)
work_params = work_phil.work.extract()
app = wx.App(0)
wx.SystemOptions.SetOptionInt("osx.openfiledialog.always-show-types", 1)
frame = XrayFrame(None, -1, "X-ray image display", size=(800,720))
frame.Show()
# show settings panel
frame.OnShowSettings(None)
frame.settings_frame.panel.center_ctrl.SetValue(
work_params.beam_center)
frame.settings_frame.panel.integ_ctrl.SetValue(
work_params.show_integration_results)
frame.settings_frame.panel.spots_ctrl.SetValue(
work_params.show_spotfinder_results)
frame.settings.show_effective_tiling = work_params.show_effective_tiling
frame.settings_frame.panel.collect_values()
if (work_params.effective_metrology is not None):
from xfel.cftbx.detector.metrology import \
master_phil, metrology_as_transformation_matrices
stream = open(work_params.effective_metrology)
metrology_phil = master_phil.fetch(sources=[phil.parse(stream.read())])
stream.close()
frame.metrology_matrices = metrology_as_transformation_matrices(
metrology_phil.extract())
# Update initial settings with values from the command line. Needs
# to be done before image is loaded (but after the frame is
# instantiated).
frame.params = work_params
frame.init_pyslip()
frame.pyslip.tiles.user_requests_antialiasing = work_params.anti_aliasing
frame.pyslip.tiles.show_untrusted = frame.params.show_untrusted
paths = work_phil.remaining_args
if (len(paths) == 1 and os.path.basename(paths[0]) == "DISTL_pickle"):
assert os.path.isfile(paths[0])
frame.load_distl_output(paths[0])
elif (len(paths) > 0):
frame.CHOOSER_SIZE = 1500
from dxtbx.imageset import ImageSetFactory
from rstbx.slip_viewer.frame import chooser_wrapper
sets = ImageSetFactory.new(paths)
for imgset in sets:
for idx in imgset.indices():
frame.add_file_name_or_data(chooser_wrapper(imgset, idx))
idx = sets[0].indices()[0]
frame.load_image(chooser_wrapper(sets[0],idx))
app.MainLoop()
return 0
