def in_degree(self, n):
"""
The matrix representing this morphism in degree n
INPUT:
- ``n`` -- degree
EXAMPLES::
sage: C = ChainComplex({0: identity_matrix(ZZ, 1)})
sage: D = ChainComplex({0: zero_matrix(ZZ, 1), 1: zero_matrix(ZZ, 1)})
sage: f = Hom(C,D)({0: identity_matrix(ZZ, 1), 1: zero_matrix(ZZ, 1)})
sage: f.in_degree(0)
[1]
Note that if the matrix is not specified in the definition of
the map, it is assumed to be zero::
sage: f.in_degree(2)
[]
sage: f.in_degree(2).nrows(), f.in_degree(2).ncols()
(1, 0)
sage: C.free_module(2)
Ambient free module of rank 0 over the principal ideal domain Integer Ring
sage: D.free_module(2)
Ambient free module of rank 1 over the principal ideal domain Integer Ring
"""
try:
return self._matrix_dictionary[n]
except KeyError:
rows = self.codomain().free_module_rank(n)
cols = self.domain().free_module_rank(n)
return zero_matrix(self.domain().base_ring(), rows, cols)
def in_degree(self, n):
"""
The matrix representing this chain homotopy in degree ``n``.
INPUT:
- ``n`` -- degree
EXAMPLES::
sage: from sage.homology.chain_homotopy import ChainHomotopy
sage: C = ChainComplex({1: matrix(ZZ, 0, 2)}) # one nonzero term in degree 1
sage: D = ChainComplex({0: matrix(ZZ, 0, 1)}) # one nonzero term in degree 0
sage: f = Hom(C, D)({})
sage: H = ChainHomotopy({1: matrix(ZZ, 1, 2, (3,1))}, f, f)
sage: H.in_degree(1)
[3 1]
This returns an appropriately sized zero matrix if the chain
homotopy is not defined in degree n::
sage: H.in_degree(-3)
[]
"""
try:
return self._matrix_dictionary[n]
except KeyError:
from sage.matrix.constructor import zero_matrix
deg = self.domain().degree_of_differential()
rows = self.codomain().free_module_rank(n - deg)
cols = self.domain().free_module_rank(n)
return zero_matrix(self.domain().base_ring(), rows, cols)
def iter_positive_forms(self):
if self.is_reduced():
sub4 = self._calc_iter_reduced_sub4()
for (a0, a1, b01, sub4s) in sub4:
t = zero_matrix(ZZ, 4)
t[0, 0] = a0
t[1, 1] = a1
t[0, 1] = b01
t[1, 0] = b01
for (a2, b02, b12, sub4ss) in sub4s:
ts = copy(t)
ts[2, 2] = a2
ts[0, 2] = b02
ts[2, 0] = b02
ts[1, 2] = b12
ts[2, 1] = b12
for (a3, b03, b13, b23) in sub4ss:
tss = copy(ts)
tss[3, 3] = a3
tss[0, 1] = b01
tss[1, 0] = b01
tss[0, 2] = b02
tss[2, 0] = b02
tss[0, 3] = b03
tss[3, 0] = b03
tss.set_immutable()
yield tss
else:
raise NotImplementedError
def in_degree(self, n):
"""
The matrix representing this morphism in degree n
INPUT:
- ``n`` -- degree
EXAMPLES::
sage: C = ChainComplex({0: identity_matrix(ZZ, 1)})
sage: D = ChainComplex({0: zero_matrix(ZZ, 1), 1: zero_matrix(ZZ, 1)})
sage: f = Hom(C,D)({0: identity_matrix(ZZ, 1), 1: zero_matrix(ZZ, 1)})
sage: f.in_degree(0)
[1]
Note that if the matrix is not specified in the definition of
the map, it is assumed to be zero::
sage: f.in_degree(2)
[]
sage: f.in_degree(2).nrows(), f.in_degree(2).ncols()
(1, 0)
sage: C.free_module(2)
Ambient free module of rank 0 over the principal ideal domain Integer Ring
sage: D.free_module(2)
Ambient free module of rank 1 over the principal ideal domain Integer Ring
"""
try:
return self._matrix_dictionary[n]
except KeyError:
rows = self.codomain().free_module_rank(n)
cols = self.domain().free_module_rank(n)
return zero_matrix(self.domain().base_ring(), rows, cols)
def invariant_form(self):
"""
Return the quadratic form preserved by the symplectic group.
OUTPUT:
A matrix.
EXAMPLES::
sage: Sp(4, QQ).invariant_form()
[ 0 0 0 1]
[ 0 0 1 0]
[ 0 -1 0 0]
[-1 0 0 0]
"""
if self._invariant_form is not None:
return self._invariant_form
R = self.base_ring()
d = self.degree()
from sage.matrix.constructor import zero_matrix
m = zero_matrix(R, d)
for i in range(d):
m[i, d - i - 1] = 1 if i < d / 2 else -1
m.set_immutable()
return m
def __compute_operator_matrix(self,T):
r"""
Compute the matrix of the operator ``T``.
EXAMPLES::
"""
R = self._R
A = self.basis_matrix().transpose()
basis = self.basis()
B = zero_matrix(R,len(self._E) * (self._k-1),self.dimension())
for rr in range(len(basis)):
g = T(basis[rr])
B.set_block(0,rr,Matrix(R,len(self._E) * (self._k-1),1,[g._F[e]._val[ii,0] for e in range(len(self._E)) for ii in range(self._k-1) ]))
try:
if not R.is_exact():
smin = min([a.valuation() for a in A.list()+B.list()])
A = R.prime()**(-smin)*A
B = R.prime()**(-smin)*B
prec = min([a.precision_absolute() for a in A.list()+B.list()])
A = A.parent()([R(x,absprec = prec) for x in A.list()])
B = B.parent()([R(x,absprec = prec) for x in B.list()])
res = (A.solve_right(B)).transpose()
res.set_immutable()
except ValueError:
# save([A,B],'error.log.sobj')
# print A.nrows(),A.ncols()
# print B.nrows(),B.ncols()
raise ValueError,'The hecke operator action is wrong.'
return res
def invariant_form(self):
"""
Return the quadratic form preserved by the symplectic group.
OUTPUT:
A matrix.
EXAMPLES::
sage: Sp(4, QQ).invariant_form()
[ 0 0 0 1]
[ 0 0 1 0]
[ 0 -1 0 0]
[-1 0 0 0]
"""
if self._invariant_form is not None:
return self._invariant_form
R = self.base_ring()
d = self.degree()
from sage.matrix.constructor import zero_matrix
m = zero_matrix(R, d)
for i in range(d):
m[i, d-i-1] = 1 if i < d/2 else -1
m.set_immutable()
return m
def in_degree(self, n):
"""
The matrix representing this chain homotopy in degree ``n``.
INPUT:
- ``n`` -- degree
EXAMPLES::
sage: from sage.homology.chain_homotopy import ChainHomotopy
sage: C = ChainComplex({1: matrix(ZZ, 0, 2)}) # one nonzero term in degree 1
sage: D = ChainComplex({0: matrix(ZZ, 0, 1)}) # one nonzero term in degree 0
sage: f = Hom(C, D)({})
sage: H = ChainHomotopy({1: matrix(ZZ, 1, 2, (3,1))}, f, f)
sage: H.in_degree(1)
[3 1]
This returns an appropriately sized zero matrix if the chain
homotopy is not defined in degree n::
sage: H.in_degree(-3)
[]
"""
try:
return self._matrix_dictionary[n]
except KeyError:
from sage.matrix.constructor import zero_matrix
deg = self.domain().degree_of_differential()
rows = self.codomain().free_module_rank(n-deg)
cols = self.domain().free_module_rank(n)
return zero_matrix(self.domain().base_ring(), rows, cols)
def iter_positive_forms(self) :
if self.is_reduced() :
sub4 = self._calc_iter_reduced_sub4()
for (a0, a1, b01, sub4s) in sub4 :
t = zero_matrix(ZZ, 4)
t[0,0] = a0
t[1,1] = a1
t[0,1] = b01
t[1,0] = b01
for (a2, b02, b12, sub4ss) in sub4s :
ts = copy(t)
ts[2,2] = a2
ts[0,2] = b02
ts[2,0] = b02
ts[1,2] = b12
ts[2,1] = b12
for (a3, b03, b13, b23) in sub4ss :
tss = copy(ts)
tss[3,3] = a3
tss[0,1] = b01
tss[1,0] = b01
tss[0,2] = b02
tss[2,0] = b02
tss[0,3] = b03
tss[3,0] = b03
tss.set_immutable()
yield tss
else :
raise NotImplementedError
def __apply_atkin_lehner(self,q,f):
r"""
This function applies an Atkin-Lehner involution to a harmonic cocycle
INPUT:
- ``q`` - an integer dividing the full level p*Nminus*Nplus
- ``f`` - a harmonic cocycle
OUTPUT:
The harmonic cocycle obtained by hitting f with the Atkin-Lehner at q
EXAMPLES:
::
"""
R=self._R
Data=self._X._get_atkin_lehner_data(q)
p=self._X._p
tmp=[self._U.element_class(self._U,zero_matrix(self._R,self._k-1,1),quick=True) for jj in range(len(self._E))]
d1=Data[1]
mga=self.embed_quaternion(Data[0])
for jj in range(len(self._E)):
t=d1[jj]
tmp[jj]+=(t.sign()*f._F[t.label]).l_act_by(p**(-t.power)*mga*t.igamma(self.embed_quaternion))
return HarmonicCocycleElement(self,tmp,from_values=True)
def _denominator():
R = PolynomialRing(ZZ, "T")
T = R.gen()
denom = R(1)
lc = self._f.list()[-1]
if lc == 1: # MONIC
for i in range(2, self._delta + 1):
if self._delta % i == 0:
phi = euler_phi(i)
G = IntegerModRing(i)
ki = G(self._q).multiplicative_order()
denom = denom * (T**ki - 1)**(phi // ki)
return denom
else: # Non-monic
x = PolynomialRing(self._Fq, "x").gen()
f = x**self._delta - lc
L = f.splitting_field("a")
roots = [r for r, _ in f.change_ring(L).roots()]
roots_dict = dict([(r, i) for i, r in enumerate(roots)])
rootsfrob = [
L.frobenius_endomorphism(self._Fq.degree())(r)
for r in roots
]
m = zero_matrix(len(roots))
for i, r in enumerate(roots):
m[i, roots_dict[rootsfrob[i]]] = 1
return R(R(m.characteristic_polynomial()) // (T - 1))
def __apply_hecke_operator(self,l,f):
r"""
This function applies a Hecke operator to a harmonic cocycle.
INPUT:
- ``l`` - an integer
- ``f`` - a harmonic cocycle
OUTPUT:
A harmonic cocycle which is the result of applying the lth Hecke operator
to f
EXAMPLES:
::
"""
R=self._R
HeckeData,alpha=self._X._get_hecke_data(l)
if(self.level()%l==0):
factor=QQ(l**(Integer((self._k-2)/2))/(l+1))
else:
factor=QQ(l**(Integer((self._k-2)/2)))
p=self._X._p
alphamat=self.embed_quaternion(alpha)
tmp=[self._U.element_class(self._U,zero_matrix(self._R,self._k-1,1),quick=True) for jj in range(len(self._E))]
for ii in range(len(HeckeData)):
d1=HeckeData[ii][1]
mga=self.embed_quaternion(HeckeData[ii][0])*alphamat
for jj in range(len(self._E)):
t=d1[jj]
tmp[jj]+=(t.sign()*f._F[t.label]).l_act_by(p**(-t.power)*mga*t.igamma(self.embed_quaternion))
return HarmonicCocycleElement(self,[factor*x for x in tmp],from_values=True)
def _rank(self, K) :
if K is QQ or K in NumberFields() :
return len(_jacobi_forms_by_taylor_expansion_coords(self.__index, self.__weight, 0))
## This is the formula used by Poor and Yuen in Paramodular cusp forms
if self.__weight == 2 :
delta = len(self.__index.divisors()) // 2 - 1
else :
delta = 0
return sum( ModularForms(1, self.__weight + 2 * j).dimension() + j**2 // (4 * self.__index)
for j in xrange(self.__index + 1) ) \
+ delta
## This is the formula given by Skoruppa in
## Jacobi forms of critical weight and Weil representations
##FIXME: There is some mistake here
if self.__weight % 2 != 0 :
## Otherwise the space X(i**(n - 2 k)) is different
## See: Skoruppa, Jacobi forms of critical weight and Weil representations
raise NotImplementedError
m = self.__index
K = CyclotomicField(24 * m, 'zeta')
zeta = K.gen(0)
quadform = lambda x : 6 * x**2
bilinform = lambda x,y : quadform(x + y) - quadform(x) - quadform(y)
T = diagonal_matrix([zeta**quadform(i) for i in xrange(2*m)])
S = sum(zeta**(-quadform(x)) for x in xrange(2 * m)) / (2 * m) \
* matrix([[zeta**(-bilinform(j,i)) for j in xrange(2*m)] for i in xrange(2*m)])
subspace_matrix_1 = matrix( [ [1 if j == i or j == 2*m - i else 0 for j in xrange(m + 1) ]
for i in xrange(2*m)] )
subspace_matrix_2 = zero_matrix(ZZ, m + 1, 2*m)
subspace_matrix_2.set_block(0,0,identity_matrix(m+1))
T = subspace_matrix_2 * T * subspace_matrix_1
S = subspace_matrix_2 * S * subspace_matrix_1
sqrt3 = (zeta**(4*m) - zeta**(-4*m)) * zeta**(-6*m)
rank = (self.__weight - 1/2 - 1) / 2 * (m + 1) \
+ 1/8 * ( zeta**(3*m * (2*self.__weight - 1)) * S.trace()
+ zeta**(3*m * (1 - 2*self.__weight)) * S.trace().conjugate() ) \
+ 2/(3*sqrt3) * ( zeta**(4 * m * self.__weight) * (S*T).trace()
+ zeta**(-4 * m * self.__weight) * (S*T).trace().conjugate() ) \
- sum((j**2 % (m+1))/(m+1) -1/2 for j in range(0,m+1))
if self.__weight > 5 / 2 :
return rank
else :
raise NotImplementedError
raise NotImplementedError
def gen(self, i = 0) :
if i < self.__n :
t = diagonal_matrix(ZZ, i * [0] + [2] + (self.__n - i - 1) * [0])
t.set_immutable()
return t
elif i >= self.__n and i < (self.__n * (self.__n + 1)) // 2 :
i = i - self.__n
for r in xrange(self.__n) :
if i >= self.__n - r - 1 :
i = i - (self.__n - r - 1)
continue
c = i + r + 1
break
t = zero_matrix(ZZ, self.__n)
t[r,c] = 1
t[c,r] = 1
t.set_immutable()
return t
elif not self.__reduced and i >= (self.__n * (self.__n + 1)) // 2 \
and i < self.__n**2 :
i = i - (self.__n * (self.__n + 1)) // 2
for r in xrange(self.__n) :
if i >= self.__n - r - 1 :
i = i - (self.__n - r - 1)
continue
c = i + r + 1
break
t = zero_matrix(ZZ, self.__n)
t[r,c] = -1
t[c,r] = -1
t.set_immutable()
return t
raise ValueError, "Generator not defined"
def matrix(self):
"""
Return the standard matrix representation of ``self``.
.. SEEALSO::
- :meth:`AffineGroup.linear_space()`
EXAMPLES::
sage: G = AffineGroup(3, GF(7))
sage: g = G([1,2,3,4,5,6,7,8,0], [10,11,12])
sage: g
[1 2 3] [3]
x |-> [4 5 6] x + [4]
[0 1 0] [5]
sage: g.matrix()
[1 2 3|3]
[4 5 6|4]
[0 1 0|5]
[-----+-]
[0 0 0|1]
sage: parent(g.matrix())
Full MatrixSpace of 4 by 4 dense matrices over Finite Field of size 7
sage: g.matrix() == matrix(g)
True
Composition of affine group elements equals multiplication of
the matrices::
sage: g1 = G.random_element()
sage: g2 = G.random_element()
sage: g1.matrix() * g2.matrix() == (g1*g2).matrix()
True
"""
A = self._A
b = self._b
parent = self.parent()
d = parent.degree()
from sage.matrix.constructor import matrix, zero_matrix, block_matrix
zero = zero_matrix(parent.base_ring(), 1, d)
one = matrix(parent.base_ring(), [[1]])
m = block_matrix(2, 2, [A, b.column(), zero, one])
m.set_immutable()
return m
def matrix(self):
"""
Return the standard matrix representation of ``self``.
.. SEEALSO::
- :meth:`AffineGroup.linear_space()`
EXAMPLES::
sage: G = AffineGroup(3, GF(7))
sage: g = G([1,2,3,4,5,6,7,8,0], [10,11,12])
sage: g
[1 2 3] [3]
x |-> [4 5 6] x + [4]
[0 1 0] [5]
sage: g.matrix()
[1 2 3|3]
[4 5 6|4]
[0 1 0|5]
[-----+-]
[0 0 0|1]
sage: parent(g.matrix())
Full MatrixSpace of 4 by 4 dense matrices over Finite Field of size 7
sage: g.matrix() == matrix(g)
True
Composition of affine group elements equals multiplication of
the matrices::
sage: g1 = G.random_element()
sage: g2 = G.random_element()
sage: g1.matrix() * g2.matrix() == (g1*g2).matrix()
True
"""
A = self._A
b = self._b
parent = self.parent()
d = parent.degree()
from sage.matrix.constructor import matrix, zero_matrix, block_matrix
zero = zero_matrix(parent.base_ring(), 1, d)
one = matrix(parent.base_ring(), [[1]])
m = block_matrix(2, 2, [A, b.column(), zero, one])
m.set_immutable()
return m
def _an_element_(self):
"""
Construct a sample morphism.
OUTPUT:
An element of the homset.
EXAMPLES::
sage: P2 = toric_varieties.P2()
sage: homset = P2.Hom(P2)
sage: homset.an_element() # indirect doctest
Scheme endomorphism of 2-d CPR-Fano toric variety covered by 3 affine patches
Defn: Defined by sending Rational polyhedral fan in 2-d lattice N to
Rational polyhedral fan in 2-d lattice N.
"""
from sage.matrix.constructor import zero_matrix
zero = zero_matrix(self.domain().dimension_relative(),
self.codomain().dimension_relative())
return self(zero)
def _an_element_(self):
"""
Construct a sample morphism.
OUTPUT:
An element of the homset.
EXAMPLES::
sage: P2 = toric_varieties.P2()
sage: homset = P2.Hom(P2)
sage: homset.an_element() # indirect doctest
Scheme endomorphism of 2-d CPR-Fano toric variety covered by 3 affine patches
Defn: Defined by sending Rational polyhedral fan in 2-d lattice N to
Rational polyhedral fan in 2-d lattice N.
"""
from sage.matrix.constructor import zero_matrix
zero = zero_matrix(self.domain().dimension_relative(),
self.codomain().dimension_relative())
return self(zero)
def invariant_form(self):
"""
Return the quadratic form preserved by the orthogonal group.
OUTPUT:
A matrix.
EXAMPLES::
sage: Sp(4, QQ).invariant_form()
[0 0 0 1]
[0 0 1 0]
[0 1 0 0]
[1 0 0 0]
"""
from sage.matrix.constructor import zero_matrix
m = zero_matrix(self.base_ring(), self.degree())
for i in range(self.degree()):
m[i, self.degree() - i - 1] = 1
m.set_immutable()
return m
def invariant_form(self):
"""
Return the quadratic form preserved by the orthogonal group.
OUTPUT:
A matrix.
EXAMPLES::
sage: Sp(4, QQ).invariant_form()
[0 0 0 1]
[0 0 1 0]
[0 1 0 0]
[1 0 0 0]
"""
from sage.matrix.constructor import zero_matrix
m = zero_matrix(self.base_ring(), self.degree())
for i in range(self.degree()):
m[i, self.degree()-i-1] = 1
m.set_immutable()
return m
def __compute_operator_matrix(self,T):
r"""
Compute the matrix of the operator ``T``.
EXAMPLES:
::
"""
R=self._R
A=self.basis_matrix().transpose()
basis=self.basis()
B=zero_matrix(R,len(self._E)*(self._k-1),self.dimension())
for rr in range(len(basis)):
g=T(basis[rr])
B.set_block(0,rr,Matrix(R,len(self._E)*(self._k-1),1,[g._F[e]._val[ii,0] for e in range(len(self._E)) for ii in range(self._k-1) ]))
try:
res=(A.solve_right(B)).transpose()
res.set_immutable()
return res
except ValueError:
print A
print B
raise ValueError
def algebraic_topological_model_delta_complex(K, base_ring=None):
r"""
Algebraic topological model for cell complex ``K``
with coefficients in the field ``base_ring``.
This has the same basic functionality as
:func:`algebraic_topological_model`, but it also works for
`\Delta`-complexes. For simplicial and cubical complexes it is
somewhat slower, though.
INPUT:
- ``K`` -- a simplicial complex, a cubical complex, or a
`\Delta`-complex
- ``base_ring`` -- coefficient ring; must be a field
OUTPUT: a pair ``(phi, M)`` consisting of
- chain contraction ``phi``
- chain complex `M`
See :func:`algebraic_topological_model` for the main
documentation. The difference in implementation between the two:
this uses matrix and vector algebra. The other function does more
of the computations "by hand" and uses cells (given as simplices
or cubes) to index various dictionaries. Since the cells in
`\Delta`-complexes are not as nice, the other function does not
work for them, while this function relies almost entirely on the
structure of the associated chain complex.
EXAMPLES::
sage: from sage.homology.algebraic_topological_model import algebraic_topological_model_delta_complex as AT_model
sage: RP2 = simplicial_complexes.RealProjectivePlane()
sage: phi, M = AT_model(RP2, GF(2))
sage: M.homology()
{0: Vector space of dimension 1 over Finite Field of size 2,
1: Vector space of dimension 1 over Finite Field of size 2,
2: Vector space of dimension 1 over Finite Field of size 2}
sage: T = delta_complexes.Torus()
sage: phi, M = AT_model(T, QQ)
sage: M.homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
If you want to work with cohomology rather than homology, just
dualize the outputs of this function::
sage: M.dual().homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
sage: M.dual().degree_of_differential()
1
sage: phi.dual()
Chain homotopy between:
Chain complex endomorphism of Chain complex with at most 3 nonzero terms over Rational Field
and Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Rational Field
To: Chain complex with at most 3 nonzero terms over Rational Field
In degree 0, the inclusion of the homology `M` into the chain
complex `C` sends the homology generator to a single vertex::
sage: K = delta_complexes.Simplex(2)
sage: phi, M = AT_model(K, QQ)
sage: phi.iota().in_degree(0)
[0]
[0]
[1]
In cohomology, though, one needs the dual of every degree 0 cell
to detect the degree 0 cohomology generator::
sage: phi.dual().iota().in_degree(0)
[1]
[1]
[1]
TESTS::
sage: T = cubical_complexes.Torus()
sage: C = T.chain_complex()
sage: H, M = AT_model(T, QQ)
sage: C.differential(1) * H.iota().in_degree(1).column(0) == 0
True
sage: C.differential(1) * H.iota().in_degree(1).column(1) == 0
True
sage: coC = T.chain_complex(cochain=True)
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(0) == 0
True
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(1) == 0
True
"""
def conditionally_sparse(m):
"""
Return a sparse matrix if the characteristic is zero.
Multiplication of matrices with low density seems to be quicker
if the matrices are sparse, when over the rationals. Over
finite fields, dense matrices are faster regardless of
density.
"""
if base_ring == QQ:
return m.sparse_matrix()
else:
return m
if not base_ring.is_field():
raise ValueError('the coefficient ring must be a field')
# The following are all dictionaries indexed by dimension.
# For each n, gens[n] is an ordered list of the n-cells generating the complex M.
gens = {}
pi_data = {}
phi_data = {}
iota_data = {}
for n in range(-1, K.dimension()+1):
gens[n] = []
C = K.chain_complex(base_ring=base_ring)
n_cells = []
pi_cols = []
iota_cols = {}
for dim in range(K.dimension()+1):
# old_cells: cells one dimension lower.
old_cells = n_cells
# n_cells: the standard basis for the vector space C.free_module(dim).
n_cells = C.free_module(dim).gens()
diff = C.differential(dim)
# diff is sparse and low density. Dense matrices are faster
# over finite fields, but for low density matrices, sparse
# matrices are faster over the rationals.
if base_ring != QQ:
diff = diff.dense_matrix()
rank = len(n_cells)
old_rank = len(old_cells)
# Create some matrix spaces to try to speed up matrix creation.
MS_pi_t = MatrixSpace(base_ring, old_rank, len(gens[dim-1]))
pi_old = MS_pi_t.matrix(pi_cols).transpose()
iota_cols_old = iota_cols
iota_cols = {}
pi_cols_old = pi_cols
pi_cols = []
phi_old = MatrixSpace(base_ring, rank, old_rank, sparse=(base_ring==QQ)).zero()
phi_old_cols = phi_old.columns()
phi_old = conditionally_sparse(phi_old)
to_be_deleted = []
zero_vector = vector(base_ring, rank)
pi_nrows = pi_old.nrows()
for c_idx, c in enumerate(n_cells):
# c_bar = c - phi(bdry(c)):
# Avoid a bug in matrix-vector multiplication (trac 19378):
if not diff:
c_bar = c
pi_bdry_c_bar = False
else:
if base_ring == QQ:
c_bar = c - phi_old * (diff * c)
pi_bdry_c_bar = conditionally_sparse(pi_old) * (diff * c_bar)
else:
c_bar = c - phi_old * diff * c
pi_bdry_c_bar = conditionally_sparse(pi_old) * diff * c_bar
# One small typo in the published algorithm: it says
# "if bdry(c_bar) == 0", but should say
# "if pi(bdry(c_bar)) == 0".
if not pi_bdry_c_bar:
# Append c to list of gens.
gens[dim].append(c_idx)
# iota(c) = c_bar
iota_cols[c_idx] = c_bar
# pi(c) = c
pi_cols.append(c)
else:
# Take any u in gens so that lambda_i = <u, pi(bdry(c_bar))> != 0.
# u_idx will be the index of the corresponding cell.
(u_idx, lambda_i) = pi_bdry_c_bar.leading_item()
for (u_idx, lambda_i) in pi_bdry_c_bar.iteritems():
if u_idx not in to_be_deleted:
break
# This element/column needs to be deleted from gens and
# iota_old. Do that later.
to_be_deleted.append(u_idx)
# pi(c) = 0.
pi_cols.append(zero_vector)
for c_j_idx, c_j in enumerate(old_cells):
# eta_ij = <u, pi(c_j)>.
# That is, eta_ij is the u_idx entry in the vector pi_old * c_j:
eta_ij = c_j.dot_product(pi_old.row(u_idx))
if eta_ij:
# Adjust phi(c_j).
phi_old_cols[c_j_idx] += eta_ij * lambda_i**(-1) * c_bar
# Adjust pi(c_j).
pi_cols_old[c_j_idx] -= eta_ij * lambda_i**(-1) * pi_bdry_c_bar
# The matrices involved have many zero entries. For
# such matrices, using sparse matrices is faster over
# the rationals, slower over finite fields.
phi_old = matrix(base_ring, phi_old_cols, sparse=(base_ring==QQ)).transpose()
keep = vector(base_ring, pi_nrows, {i:1 for i in range(pi_nrows)
if i not in to_be_deleted})
cols = [v.pairwise_product(keep) for v in pi_cols_old]
pi_old = MS_pi_t.matrix(cols).transpose()
# Here cols is a temporary storage for the columns of iota.
cols = [iota_cols_old[i] for i in sorted(iota_cols_old.keys())]
for r in sorted(to_be_deleted, reverse=True):
del cols[r]
del gens[dim-1][r]
iota_data[dim-1] = matrix(base_ring, len(gens[dim-1]), old_rank, cols).transpose()
# keep: rows to keep in pi_cols_old. Start with all
# columns, then delete those in to_be_deleted.
keep = sorted(set(range(pi_nrows)).difference(to_be_deleted))
# Now cols is a temporary storage for columns of pi.
cols = [v.list_from_positions(keep) for v in pi_cols_old]
pi_data[dim-1] = matrix(base_ring, old_rank, len(gens[dim-1]), cols).transpose()
phi_data[dim-1] = phi_old
V_gens = VectorSpace(base_ring, len(gens[dim]))
if pi_cols:
cols = []
for v in pi_cols:
cols.append(V_gens(v.list_from_positions(gens[dim])))
pi_cols = cols
pi_data[dim] = matrix(base_ring, rank, len(gens[dim]), pi_cols).transpose()
cols = [iota_cols[i] for i in sorted(iota_cols.keys())]
iota_data[dim] = matrix(base_ring, len(gens[dim]), rank, cols).transpose()
# M_data will contain (trivial) matrices defining the differential
# on M. Keep track of the sizes using "M_rows" and "M_cols", which are
# just the ranks of consecutive graded pieces of M.
M_data = {}
M_rows = 0
for n in range(K.dimension()+1):
M_cols = len(gens[n])
M_data[n] = zero_matrix(base_ring, M_rows, M_cols)
M_rows = M_cols
M = ChainComplex(M_data, base_ring=base_ring, degree=-1)
pi = ChainComplexMorphism(pi_data, C, M)
iota = ChainComplexMorphism(iota_data, M, C)
phi = ChainContraction(phi_data, pi, iota)
return phi, M
def SymplecticPolarGraph(d, q, algorithm=None):
r"""
Returns the Symplectic Polar Graph `Sp(d,q)`.
The Symplectic Polar Graph `Sp(d,q)` is built from a projective space of dimension
`d-1` over a field `F_q`, and a symplectic form `f`. Two vertices `u,v` are
made adjacent if `f(u,v)=0`.
See the page `on symplectic graphs on Andries Brouwer's website
<http://www.win.tue.nl/~aeb/graphs/Sp.html>`_.
INPUT:
- ``d,q`` (integers) -- note that only even values of `d` are accepted by
the function.
- ``algorithm`` -- if set to 'gap' then the computation is carried via GAP
library interface, computing totally singular subspaces, which is faster for `q>3`.
Otherwise it is done directly.
EXAMPLES:
Computation of the spectrum of `Sp(6,2)`::
sage: g = graphs.SymplecticGraph(6,2)
doctest:...: DeprecationWarning: SymplecticGraph is deprecated. Please use sage.graphs.generators.classical_geometries.SymplecticPolarGraph instead.
See http://trac.sagemath.org/19136 for details.
sage: g.is_strongly_regular(parameters=True)
(63, 30, 13, 15)
sage: set(g.spectrum()) == {-5, 3, 30}
True
The parameters of `Sp(4,q)` are the same as of `O(5,q)`, but they are
not isomorphic if `q` is odd::
sage: G = graphs.SymplecticPolarGraph(4,3)
sage: G.is_strongly_regular(parameters=True)
(40, 12, 2, 4)
sage: O=graphs.OrthogonalPolarGraph(5,3)
sage: O.is_strongly_regular(parameters=True)
(40, 12, 2, 4)
sage: O.is_isomorphic(G)
False
sage: graphs.SymplecticPolarGraph(6,4,algorithm="gap").is_strongly_regular(parameters=True) # not tested (long time)
(1365, 340, 83, 85)
TESTS::
sage: graphs.SymplecticPolarGraph(4,4,algorithm="gap").is_strongly_regular(parameters=True)
(85, 20, 3, 5)
sage: graphs.SymplecticPolarGraph(4,4).is_strongly_regular(parameters=True)
(85, 20, 3, 5)
sage: graphs.SymplecticPolarGraph(4,4,algorithm="blah")
Traceback (most recent call last):
...
ValueError: unknown algorithm!
"""
if d < 1 or d%2 != 0:
raise ValueError("d must be even and greater than 2")
if algorithm == "gap": # faster for larger (q>3) fields
from sage.libs.gap.libgap import libgap
G = _polar_graph(d, q, libgap.SymplecticGroup(d, q))
elif algorithm == None: # faster for small (q<4) fields
from sage.modules.free_module import VectorSpace
from sage.schemes.projective.projective_space import ProjectiveSpace
from sage.matrix.constructor import identity_matrix, block_matrix, zero_matrix
F = FiniteField(q,"x")
M = block_matrix(F, 2, 2,
[zero_matrix(F,d/2),
identity_matrix(F,d/2),
-identity_matrix(F,d/2),
zero_matrix(F,d/2)])
V = VectorSpace(F,d)
PV = list(ProjectiveSpace(d-1,F))
G = Graph([[tuple(_) for _ in PV], lambda x,y:V(x)*(M*V(y)) == 0], loops = False)
else:
raise ValueError("unknown algorithm!")
G.name("Symplectic Polar Graph Sp("+str(d)+","+str(q)+")")
G.relabel()
return G
def _find_isomorphism_degenerate(self, polytope):
"""
Helper to pick an isomorphism of degenerate polygons
INPUT:
- ``polytope`` -- a :class:`LatticePolytope_PPL_class`. The
polytope to compare with.
EXAMPLES::
sage: from sage.geometry.polyhedron.ppl_lattice_polytope import LatticePolytope_PPL, C_Polyhedron
sage: L1 = LatticePolytope_PPL(C_Polyhedron(2, 'empty'))
sage: L2 = LatticePolytope_PPL(C_Polyhedron(3, 'empty'))
sage: iso = L1.find_isomorphism(L2) # indirect doctest
sage: iso(L1) == L2
True
sage: iso = L1._find_isomorphism_degenerate(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,4))
sage: L2 = LatticePolytope_PPL((2,1,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,), (3,))
sage: L2 = LatticePolytope_PPL((2,1,5), (2,-3,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,-1), (3,-1))
sage: L2 = LatticePolytope_PPL((2,1,5), (2,-3,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,2), (3,1))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,4))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,2), (3,2))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,4))
sage: L1.find_isomorphism(L2)
Traceback (most recent call last):
...
LatticePolytopesNotIsomorphicError: different number of integral points
sage: L1 = LatticePolytope_PPL((-1,2), (3,1))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,5))
sage: L1.find_isomorphism(L2)
Traceback (most recent call last):
...
LatticePolytopesNotIsomorphicError: different number of integral points
"""
from sage.geometry.polyhedron.lattice_euclidean_group_element import \
LatticePolytopesNotIsomorphicError
polytope_vertices = polytope.vertices()
self_vertices = self.ordered_vertices()
# handle degenerate cases
if self.n_vertices() == 0:
A = zero_matrix(ZZ, polytope.space_dimension(),
self.space_dimension())
b = zero_vector(ZZ, polytope.space_dimension())
return LatticeEuclideanGroupElement(A, b)
if self.n_vertices() == 1:
A = zero_matrix(ZZ, polytope.space_dimension(),
self.space_dimension())
b = polytope_vertices[0]
return LatticeEuclideanGroupElement(A, b)
if self.n_vertices() == 2:
self_origin = self_vertices[0]
self_ray = self_vertices[1] - self_origin
polytope_origin = polytope_vertices[0]
polytope_ray = polytope_vertices[1] - polytope_origin
Ds, Us, Vs = self_ray.column().smith_form()
Dp, Up, Vp = polytope_ray.column().smith_form()
assert Vs.nrows() == Vs.ncols() == Vp.nrows() == Vp.ncols() == 1
assert abs(Vs[0, 0]) == abs(Vp[0, 0]) == 1
A = zero_matrix(ZZ, Dp.nrows(), Ds.nrows())
A[0, 0] = 1
A = Up.inverse() * A * Us * (Vs[0, 0] * Vp[0, 0])
b = polytope_origin - A * self_origin
try:
A = matrix(ZZ, A)
b = vector(ZZ, b)
except TypeError:
raise LatticePolytopesNotIsomorphicError('different lattice')
hom = LatticeEuclideanGroupElement(A, b)
if hom(self) == polytope:
return hom
raise LatticePolytopesNotIsomorphicError('different polygons')
def zero_element(self) :
t = zero_matrix(ZZ, self.__n)
t.set_immutable()
return t
def __iter__(self) :
if self.index() is infinity :
raise ValueError, "infinity is not a true filter index"
if self.is_reduced() :
## We only iterate positive definite matrices
## and later build the semidefinite ones
## We first find possible upper left matrices
sub2 = self._calc_iter_reduced_sub2()
sub3 = self._calc_iter_reduced_sub3()
sub4 = self._calc_iter_reduced_sub4()
t = zero_matrix(ZZ, 4)
t.set_immutable()
yield t
for a0 in xrange(2, 2 * self.index(), 2) :
t = zero_matrix(ZZ, 4)
t[3,3] = a0
t.set_immutable()
yield t
for (a0, a1, b01) in sub2 :
t = zero_matrix(ZZ, 4)
t[2,2] = a0
t[3,3] = a1
t[2,3] = b01
t[3,2] = b01
t.set_immutable()
yield t
for (a0, a1, b01, sub3s) in sub3 :
t = zero_matrix(ZZ, 4)
t[1,1] = a0
t[2,2] = a1
t[1,2] = b01
t[2,1] = b01
for (a2, b02, b12) in sub3s :
ts = copy(t)
ts[3,3] = a2
ts[1,3] = b02
ts[3,1] = b02
ts[2,3] = b12
ts[3,2] = b12
ts.set_immutable()
yield ts
for (a0, a1, b01, sub4s) in sub4 :
t = zero_matrix(ZZ, 4)
t[0,0] = a0
t[1,1] = a1
t[0,1] = b01
t[1,0] = b01
for (a2, b02, b12, sub4ss) in sub4s :
ts = copy(t)
ts[2,2] = a2
ts[0,2] = b02
ts[2,0] = b02
ts[1,2] = b12
ts[2,1] = b12
for (a3, b03, b13, b23) in sub4ss :
tss = copy(ts)
tss[3,3] = a3
tss[0,1] = b01
tss[1,0] = b01
tss[0,2] = b02
tss[2,0] = b02
tss[0,3] = b03
tss[3,0] = b03
tss.set_immutable()
yield tss
#! if self.is_reduced()
else :
## We first find possible upper left matrices
sub2 = list()
for a0 in xrange(2 * self.index(), 2) :
for a1 in xrange(2 * self.index(), 2) :
# obstruction for t[0,1]
B1 = isqrt(a0 * a1)
for b01 in xrange(-B1, B1 + 1) :
sub2.append((a0,a1,b01))
sub3 = list()
for (a0, a1, b01) in sub2 :
sub3s = list()
for a2 in xrange(2 * self.index(), 2) :
# obstruction for t[0,2]
B1 = isqrt(a0 * a2)
for b02 in xrange(-B1, B1 + 1) :
# obstruction for t[1,2]
B3 = isqrt(a1 * a2)
for b12 in xrange(-B3, B3 + 1) :
# obstruction for the minor [0,1,2] of t
if a0*a1*a2 - a0*b12**2 + 2*b01*b12*b02 - b01**2*a2 - a1*b02**2 < 0 :
continue
sub3s.append((a2, b02, b12))
sub3.append((a0, a1, b01, sub3s))
for (a0,a1,b01, sub3s) in sub3 :
for (a2, b02, b12) in sub3s :
for a3 in xrange(2 * self.index(), 2) :
# obstruction for t[0,3]
B1 = isqrt(a0 * a3)
for b03 in xrange(-B1, B1 + 1) :
# obstruction for t[1,3]
B3 = isqrt(a1 * a3)
for b13 in xrange(-B3, B3 + 1) :
# obstruction for the minor [0,1,3] of t
if a0*a1*a3 - a0*b13**2 + 2*b01*b13*b03 - b01**2*a3 - a1*b03**2 < 0 :
continue
# obstruction for t[2,3]
B3 = isqrt(a2 * a3)
for b23 in xrange(-B3, B3 + 1) :
# obstruction for the minor [0,2,3] of t
if a0*a2*a3 - a0*b23**2 + 2*b02*b23*b03 - b02**2*a3 - a2*b03**2 < 0 :
continue
# obstruction for the minor [1,2,3] of t
if a1*a2*a3 - a1*b23**2 + 2*b12*b23*b13 - b12**2*a3 - a2*b13**2 < 0 :
continue
t = matrix(ZZ, 4, [a0, b01, b02, b03, b01, a1, b12, b13, b02, b12, a2, b23, b03, b13, b23, a3], check = False)
if t.det() < 0 :
continue
t.set_immutable()
yield t
raise StopIteration
def cohomology_complex(self, m):
r"""
Return the "cohomology complex" `C^*(m)`
See [Klyachko]_, equation 4.2.
INPUT:
- ``m`` -- tuple of integers or `M`-lattice point. A point in
the dual lattice of the fan. Must be immutable.
OUTPUT:
The "cohomology complex" as a chain complex over the
:meth:`base_ring`.
EXAMPLES::
sage: P3 = toric_varieties.P(3)
sage: rays = [(1,0,0), (0,1,0), (0,0,1)]
sage: F1 = FilteredVectorSpace(rays, {0:[0], 1:[2], 2:[1]})
sage: F2 = FilteredVectorSpace(rays, {0:[1,2], 1:[0]})
sage: r = P3.fan().rays()
sage: V = P3.sheaves.Klyachko({r[0]:F1, r[1]:F2, r[2]:F2, r[3]:F2})
sage: tau = Cone([(1,0,0), (0,1,0)])
sage: sigma = Cone([(1, 0, 0)])
sage: M = P3.fan().dual_lattice()
sage: m = M(1, 1, 0); m.set_immutable()
sage: V.cohomology_complex(m)
Chain complex with at most 2 nonzero terms over Rational Field
sage: F = CyclotomicField(3)
sage: P3 = toric_varieties.P(3).change_ring(F)
sage: V = P3.sheaves.Klyachko({r[0]:F1, r[1]:F2, r[2]:F2, r[3]:F2})
sage: V.cohomology_complex(m)
Chain complex with at most 2 nonzero terms over Cyclotomic
Field of order 3 and degree 2
"""
fan = self._variety.fan()
C = fan.complex()
CV = []
F = self.base_ring()
for dim in range(1,fan.dim()+1):
codim = fan.dim() - dim
d_C = C.differential(codim)
d_V = []
for j in range(0, d_C.ncols()):
tau = fan(dim)[j]
d_V_row = []
for i in range(0, d_C.nrows()):
sigma = fan(dim-1)[i]
if sigma.is_face_of(tau):
pr = self.E_quotient_projection(sigma, tau, m)
d = d_C[i,j] * pr.matrix().transpose()
else:
E_sigma = self.E_quotient(sigma, m)
E_tau = self.E_quotient(tau, m)
d = zero_matrix(F, E_tau.dimension(), E_sigma.dimension())
d_V_row.append(d)
d_V.append(d_V_row)
d_V = block_matrix(d_V, ring=F)
CV.append(d_V)
from sage.homology.chain_complex import ChainComplex
return ChainComplex(CV, base_ring=self.base_ring())
def SymplecticPolarGraph(d, q, algorithm=None):
r"""
Returns the Symplectic Polar Graph `Sp(d,q)`.
The Symplectic Polar Graph `Sp(d,q)` is built from a projective space of dimension
`d-1` over a field `F_q`, and a symplectic form `f`. Two vertices `u,v` are
made adjacent if `f(u,v)=0`.
See the page `on symplectic graphs on Andries Brouwer's website
<http://www.win.tue.nl/~aeb/graphs/Sp.html>`_.
INPUT:
- ``d,q`` (integers) -- note that only even values of `d` are accepted by
the function.
- ``algorithm`` -- if set to 'gap' then the computation is carried via GAP
library interface, computing totally singular subspaces, which is faster for `q>3`.
Otherwise it is done directly.
EXAMPLES:
Computation of the spectrum of `Sp(6,2)`::
sage: g = graphs.SymplecticGraph(6,2)
doctest:...: DeprecationWarning: SymplecticGraph is deprecated. Please use sage.graphs.generators.classical_geometries.SymplecticPolarGraph instead.
See http://trac.sagemath.org/19136 for details.
sage: g.is_strongly_regular(parameters=True)
(63, 30, 13, 15)
sage: set(g.spectrum()) == {-5, 3, 30}
True
The parameters of `Sp(4,q)` are the same as of `O(5,q)`, but they are
not isomorphic if `q` is odd::
sage: G = graphs.SymplecticPolarGraph(4,3)
sage: G.is_strongly_regular(parameters=True)
(40, 12, 2, 4)
sage: O=graphs.OrthogonalPolarGraph(5,3)
sage: O.is_strongly_regular(parameters=True)
(40, 12, 2, 4)
sage: O.is_isomorphic(G)
False
sage: graphs.SymplecticPolarGraph(6,4,algorithm="gap").is_strongly_regular(parameters=True) # not tested (long time)
(1365, 340, 83, 85)
TESTS::
sage: graphs.SymplecticPolarGraph(4,4,algorithm="gap").is_strongly_regular(parameters=True)
(85, 20, 3, 5)
sage: graphs.SymplecticPolarGraph(4,4).is_strongly_regular(parameters=True)
(85, 20, 3, 5)
sage: graphs.SymplecticPolarGraph(4,4,algorithm="blah")
Traceback (most recent call last):
...
ValueError: unknown algorithm!
"""
if d < 1 or d % 2 != 0:
raise ValueError("d must be even and greater than 2")
if algorithm == "gap": # faster for larger (q>3) fields
from sage.libs.gap.libgap import libgap
G = _polar_graph(d, q, libgap.SymplecticGroup(d, q))
elif algorithm == None: # faster for small (q<4) fields
from sage.rings.finite_rings.constructor import FiniteField
from sage.modules.free_module import VectorSpace
from sage.schemes.projective.projective_space import ProjectiveSpace
from sage.matrix.constructor import identity_matrix, block_matrix, zero_matrix
F = FiniteField(q, "x")
M = block_matrix(F, 2, 2, [
zero_matrix(F, d / 2),
identity_matrix(F, d / 2), -identity_matrix(F, d / 2),
zero_matrix(F, d / 2)
])
V = VectorSpace(F, d)
PV = list(ProjectiveSpace(d - 1, F))
G = Graph([[tuple(_) for _ in PV], lambda x, y: V(x) *
(M * V(y)) == 0],
loops=False)
else:
raise ValueError("unknown algorithm!")
G.name("Symplectic Polar Graph Sp(" + str(d) + "," + str(q) + ")")
G.relabel()
return G
def __init__(self, matrices, C, D, check=True):
"""
Create a morphism from a dictionary of matrices.
EXAMPLES::
sage: S = simplicial_complexes.Sphere(1)
sage: S
Minimal triangulation of the 1-sphere
sage: C = S.chain_complex()
sage: C.differential()
{0: [], 1: [ 1 1 0]
[ 0 -1 -1]
[-1 0 1], 2: []}
sage: f = {0:zero_matrix(ZZ,3,3),1:zero_matrix(ZZ,3,3)}
sage: G = Hom(C,C)
sage: x = G(f)
sage: x
Chain complex endomorphism of Chain complex with at most 2 nonzero terms over Integer Ring
sage: x._matrix_dictionary
{0: [0 0 0]
[0 0 0]
[0 0 0], 1: [0 0 0]
[0 0 0]
[0 0 0]}
Check that the bug in :trac:`13220` has been fixed::
sage: X = simplicial_complexes.Simplex(1)
sage: Y = simplicial_complexes.Simplex(0)
sage: g = Hom(X,Y)({0:0, 1:0})
sage: g.associated_chain_complex_morphism()
Chain complex morphism:
From: Chain complex with at most 2 nonzero terms over Integer Ring
To: Chain complex with at most 1 nonzero terms over Integer Ring
Check that an error is raised if the matrices are the wrong size::
sage: C = ChainComplex({0: zero_matrix(ZZ, 0, 1)})
sage: D = ChainComplex({0: zero_matrix(ZZ, 0, 2)})
sage: Hom(C,D)({0: matrix(1, 2, [1, 1])}) # 1x2 is the wrong size.
Traceback (most recent call last):
...
ValueError: matrix in degree 0 is not the right size
sage: Hom(C,D)({0: matrix(2, 1, [1, 1])}) # 2x1 is right.
Chain complex morphism:
From: Chain complex with at most 1 nonzero terms over Integer Ring
To: Chain complex with at most 1 nonzero terms over Integer Ring
"""
if not C.base_ring() == D.base_ring():
raise NotImplementedError(
'morphisms between chain complexes of different'
' base rings are not implemented')
d = C.degree_of_differential()
if d != D.degree_of_differential():
raise ValueError('degree of differential does not match')
from sage.misc.misc import uniq
degrees = uniq(C.differential().keys() + D.differential().keys())
initial_matrices = dict(matrices)
matrices = dict()
for i in degrees:
if i - d not in degrees:
if not (C.free_module_rank(i) == D.free_module_rank(i) == 0):
raise ValueError(
'{} and {} are not rank 0 in degree {}'.format(
C, D, i))
continue
try:
matrices[i] = initial_matrices.pop(i)
except KeyError:
matrices[i] = zero_matrix(C.base_ring(),
D.differential(i).ncols(),
C.differential(i).ncols(),
sparse=True)
if check:
# All remaining matrices given must be 0x0.
if not all(m.ncols() == m.nrows() == 0
for m in initial_matrices.values()):
raise ValueError('the remaining matrices are not empty')
# Check sizes of matrices.
for i in matrices:
if (matrices[i].nrows() != D.free_module_rank(i)
or matrices[i].ncols() != C.free_module_rank(i)):
raise ValueError(
'matrix in degree {} is not the right size'.format(i))
# Check commutativity.
for i in degrees:
if i - d not in degrees:
if not (C.free_module_rank(i) == D.free_module_rank(i) ==
0):
raise ValueError(
'{} and {} are not rank 0 in degree {}'.format(
C, D, i))
continue
if i + d not in degrees:
if not (C.free_module_rank(i + d) ==
D.free_module_rank(i + d) == 0):
raise ValueError(
'{} and {} are not rank 0 in degree {}'.format(
C, D, i + d))
continue
Dm = D.differential(i) * matrices[i]
mC = matrices[i + d] * C.differential(i)
if mC != Dm:
raise ValueError(
'matrices must define a chain complex morphism')
self._matrix_dictionary = {}
for i in matrices:
m = matrices[i]
# Use immutable matrices because they're hashable.
m.set_immutable()
self._matrix_dictionary[i] = m
Morphism.__init__(self, Hom(C, D, ChainComplexes(C.base_ring())))
def _find_isomorphism_degenerate(self, polytope):
"""
Helper to pick an isomorphism of degenerate polygons
INPUT:
- ``polytope`` -- a :class:`LatticePolytope_PPL_class`. The
polytope to compare with.
EXAMPLES::
sage: from sage.geometry.polyhedron.ppl_lattice_polytope import LatticePolytope_PPL, C_Polyhedron
sage: L1 = LatticePolytope_PPL(C_Polyhedron(2, 'empty'))
sage: L2 = LatticePolytope_PPL(C_Polyhedron(3, 'empty'))
sage: iso = L1.find_isomorphism(L2) # indirect doctest
sage: iso(L1) == L2
True
sage: iso = L1._find_isomorphism_degenerate(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,4))
sage: L2 = LatticePolytope_PPL((2,1,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,), (3,))
sage: L2 = LatticePolytope_PPL((2,1,5), (2,-3,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,-1), (3,-1))
sage: L2 = LatticePolytope_PPL((2,1,5), (2,-3,5))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,2), (3,1))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,4))
sage: iso = L1.find_isomorphism(L2)
sage: iso(L1) == L2
True
sage: L1 = LatticePolytope_PPL((-1,2), (3,2))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,4))
sage: L1.find_isomorphism(L2)
Traceback (most recent call last):
...
LatticePolytopesNotIsomorphicError: different number of integral points
sage: L1 = LatticePolytope_PPL((-1,2), (3,1))
sage: L2 = LatticePolytope_PPL((1,2,3),(1,2,5))
sage: L1.find_isomorphism(L2)
Traceback (most recent call last):
...
LatticePolytopesNotIsomorphicError: different number of integral points
"""
from sage.geometry.polyhedron.lattice_euclidean_group_element import \
LatticePolytopesNotIsomorphicError
polytope_vertices = polytope.vertices()
self_vertices = self.ordered_vertices()
# handle degenerate cases
if self.n_vertices() == 0:
A = zero_matrix(ZZ, polytope.space_dimension(), self.space_dimension())
b = zero_vector(ZZ, polytope.space_dimension())
return LatticeEuclideanGroupElement(A, b)
if self.n_vertices() == 1:
A = zero_matrix(ZZ, polytope.space_dimension(), self.space_dimension())
b = polytope_vertices[0]
return LatticeEuclideanGroupElement(A, b)
if self.n_vertices() == 2:
self_origin = self_vertices[0]
self_ray = self_vertices[1] - self_origin
polytope_origin = polytope_vertices[0]
polytope_ray = polytope_vertices[1] - polytope_origin
Ds, Us, Vs = self_ray.column().smith_form()
Dp, Up, Vp = polytope_ray.column().smith_form()
assert Vs.nrows() == Vs.ncols() == Vp.nrows() == Vp.ncols() == 1
assert abs(Vs[0, 0]) == abs(Vp[0, 0]) == 1
A = zero_matrix(ZZ, Dp.nrows(), Ds.nrows())
A[0, 0] = 1
A = Up.inverse() * A * Us * (Vs[0, 0] * Vp[0, 0])
b = polytope_origin - A*self_origin
try:
A = matrix(ZZ, A)
b = vector(ZZ, b)
except TypeError:
raise LatticePolytopesNotIsomorphicError('different lattice')
hom = LatticeEuclideanGroupElement(A, b)
if hom(self) == polytope:
return hom
raise LatticePolytopesNotIsomorphicError('different polygons')
def cohomology_complex(self, m):
r"""
Return the "cohomology complex" `C^*(m)`
See [Klyachko]_, equation 4.2.
INPUT:
- ``m`` -- tuple of integers or `M`-lattice point. A point in
the dual lattice of the fan. Must be immutable.
OUTPUT:
The "cohomology complex" as a chain complex over the
:meth:`base_ring`.
EXAMPLES::
sage: P3 = toric_varieties.P(3)
sage: rays = [(1,0,0), (0,1,0), (0,0,1)]
sage: F1 = FilteredVectorSpace(rays, {0:[0], 1:[2], 2:[1]})
sage: F2 = FilteredVectorSpace(rays, {0:[1,2], 1:[0]})
sage: r = P3.fan().rays()
sage: V = P3.sheaves.Klyachko({r[0]:F1, r[1]:F2, r[2]:F2, r[3]:F2})
sage: tau = Cone([(1,0,0), (0,1,0)])
sage: sigma = Cone([(1, 0, 0)])
sage: M = P3.fan().dual_lattice()
sage: m = M(1, 1, 0); m.set_immutable()
sage: V.cohomology_complex(m)
Chain complex with at most 2 nonzero terms over Rational Field
sage: F = CyclotomicField(3)
sage: P3 = toric_varieties.P(3).change_ring(F)
sage: V = P3.sheaves.Klyachko({r[0]:F1, r[1]:F2, r[2]:F2, r[3]:F2})
sage: V.cohomology_complex(m)
Chain complex with at most 2 nonzero terms over Cyclotomic
Field of order 3 and degree 2
"""
fan = self._variety.fan()
C = fan.complex()
CV = []
F = self.base_ring()
for dim in range(1, fan.dim() + 1):
codim = fan.dim() - dim
d_C = C.differential(codim)
d_V = []
for j in range(d_C.ncols()):
tau = fan(dim)[j]
d_V_row = []
for i in range(d_C.nrows()):
sigma = fan(dim - 1)[i]
if sigma.is_face_of(tau):
pr = self.E_quotient_projection(sigma, tau, m)
d = d_C[i, j] * pr.matrix().transpose()
else:
E_sigma = self.E_quotient(sigma, m)
E_tau = self.E_quotient(tau, m)
d = zero_matrix(F, E_tau.dimension(),
E_sigma.dimension())
d_V_row.append(d)
d_V.append(d_V_row)
d_V = block_matrix(d_V, ring=F)
CV.append(d_V)
from sage.homology.chain_complex import ChainComplex
return ChainComplex(CV, base_ring=self.base_ring())
def _global_restriction_matrix(precision, S, weight_parity, find_relations = False) :
r"""
A matrix that maps the Fourier expansion of a Jacobi form of given precision
to their restrictions with respect to the elements of S.
INPUT:
- ``precision`` -- An instance of JacobiFormD1Filter.
- `S` -- A list of vectors.
- ``weight_parity`` -- The parity of the weight of the considered Jacobi forms.
- ``find_relation`` -- A boolean. If ``True``, then the restrictions to
nonreduced indices will also be computed.
TESTS::
sage: from psage.modform.jacobiforms.jacobiformd1_fourierexpansion import *
sage: from psage.modform.jacobiforms.jacobiformd1_fegenerators import _global_restriction_matrix
sage: precision = JacobiFormD1Filter(5, QuadraticForm(matrix(2, [2,1,1,2])))
sage: (global_restriction_matrix, row_groups, row_labels, column_labels) = _global_restriction_matrix(precision, [vector((1,0))], 12)
sage: global_restriction_matrix
[1 0 0 0 0 0 0 0 0]
[0 1 2 0 0 0 0 0 0]
[2 0 2 0 0 0 0 0 0]
[0 0 2 1 2 0 0 0 0]
[0 2 0 0 2 0 0 0 0]
[2 0 0 0 2 1 2 0 0]
[0 0 2 2 0 0 2 0 0]
[0 2 0 0 0 0 2 1 2]
[0 0 0 0 2 2 0 0 2]
sage: (row_groups, row_labels, column_labels)
([((1, 0), 1, 0, 9)], {1: {(0, 0): 0, (3, 0): 5, (3, 1): 6, (2, 1): 4, (2, 0): 3, (1, 0): 1, (4, 1): 8, (1, 1): 2, (4, 0): 7}}, [(0, (0, 0)), (1, (0, 0)), (1, (1, 1)), (2, (0, 0)), (2, (1, 1)), (3, (0, 0)), (3, (1, 1)), (4, (0, 0)), (4, (1, 1))])
"""
L = precision.jacobi_index()
weight_parity = weight_parity % 2
jacobi_indices = [ L(s) for s in S ]
index_filters = dict( (m, list(JacobiFormD1NNFilter(precision.index(), m, reduced = not find_relations)))
for m in Set(jacobi_indices) )
column_labels = list(precision)
reductions = dict( (l, list()) for l in column_labels )
for l in precision.monoid_filter() :
(lred, sign) = precision.monoid().reduce(l)
reductions[lred].append((l, sign))
row_groups = [ len(index_filters[m]) for m in jacobi_indices ]
row_groups = [ (s, m, sum(row_groups[:i]), row_groups[i]) for ((i, s), m) in zip(enumerate(S), jacobi_indices) ]
row_labels = dict( (m, dict( (l, i) for (i, l) in enumerate(index_filters[m]) ))
for m in Set(jacobi_indices) )
dot_products = [ cython_lambda( ' , '.join([ 'int x{0}'.format(i) for i in range(len(s)) ]),
' + '.join([ '{0} * x{1}'.format(s[i], i) for i in range(len(s)) ]) )
for (s, _, _, _) in row_groups ]
restriction_matrix = zero_matrix(ZZ, row_groups[-1][2] + row_groups[-1][3], len(column_labels))
for (cind, l) in enumerate(column_labels) :
for ((n, r), sign) in reductions[l] :
for ((s, m, start, length), dot_product) in zip(row_groups, dot_products) :
row_labels_dict = row_labels[m]
try :
restriction_matrix[start + row_labels_dict[(n, dot_product(*r))], cind] \
+= 1 if weight_parity == 0 else sign
except KeyError :
pass
return (restriction_matrix, row_groups, row_labels, column_labels)
def algebraic_topological_model(K, base_ring=None):
r"""
Algebraic topological model for cell complex ``K``
with coefficients in the field ``base_ring``.
INPUT:
- ``K`` -- either a simplicial complex or a cubical complex
- ``base_ring`` -- coefficient ring; must be a field
OUTPUT: a pair ``(phi, M)`` consisting of
- chain contraction ``phi``
- chain complex `M`
This construction appears in a paper by Pilarczyk and Réal [PR]_.
Given a cell complex `K` and a field `F`, there is a chain complex
`C` associated to `K` with coefficients in `F`. The *algebraic
topological model* for `K` is a chain complex `M` with trivial
differential, along with chain maps `\pi: C \to M` and `\iota: M
\to C` such that
- `\pi \iota = 1_M`, and
- there is a chain homotopy `\phi` between `1_C` and `\iota \pi`.
In particular, `\pi` and `\iota` induce isomorphisms on homology,
and since `M` has trivial differential, it is its own homology,
and thus also the homology of `C`. Thus `\iota` lifts homology
classes to their cycle representatives.
The chain homotopy `\phi` satisfies some additional properties,
making it a *chain contraction*:
- `\phi \phi = 0`,
- `\pi \phi = 0`,
- `\phi \iota = 0`.
Given an algebraic topological model for `K`, it is then easy to
compute cup products and cohomology operations on the cohomology
of `K`, as described in [G-DR03]_ and [PR]_.
Implementation details: the cell complex `K` must have an
:meth:`~sage.homology.cell_complex.GenericCellComplex.n_cells`
method from which we can extract a list of cells in each
dimension. Combining the lists in increasing order of dimension
then defines a filtration of the complex: a list of cells in which
the boundary of each cell consists of cells earlier in the
list. This is required by Pilarczyk and Réal's algorithm. There
must also be a
:meth:`~sage.homology.cell_complex.GenericCellComplex.chain_complex`
method, to construct the chain complex `C` associated to this
chain complex.
In particular, this works for simplicial complexes and cubical
complexes. It doesn't work for `\Delta`-complexes, though: the list
of their `n`-cells has the wrong format.
Note that from the chain contraction ``phi``, one can recover the
chain maps `\pi` and `\iota` via ``phi.pi()`` and
``phi.iota()``. Then one can recover `C` and `M` from, for
example, ``phi.pi().domain()`` and ``phi.pi().codomain()``,
respectively.
EXAMPLES::
sage: from sage.homology.algebraic_topological_model import algebraic_topological_model
sage: RP2 = simplicial_complexes.RealProjectivePlane()
sage: phi, M = algebraic_topological_model(RP2, GF(2))
sage: M.homology()
{0: Vector space of dimension 1 over Finite Field of size 2,
1: Vector space of dimension 1 over Finite Field of size 2,
2: Vector space of dimension 1 over Finite Field of size 2}
sage: T = cubical_complexes.Torus()
sage: phi, M = algebraic_topological_model(T, QQ)
sage: M.homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
If you want to work with cohomology rather than homology, just
dualize the outputs of this function::
sage: M.dual().homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
sage: M.dual().degree_of_differential()
1
sage: phi.dual()
Chain homotopy between:
Chain complex endomorphism of Chain complex with at most 3 nonzero terms over Rational Field
and Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Rational Field
To: Chain complex with at most 3 nonzero terms over Rational Field
In degree 0, the inclusion of the homology `M` into the chain
complex `C` sends the homology generator to a single vertex::
sage: K = simplicial_complexes.Simplex(2)
sage: phi, M = algebraic_topological_model(K, QQ)
sage: phi.iota().in_degree(0)
[0]
[0]
[1]
In cohomology, though, one needs the dual of every degree 0 cell
to detect the degree 0 cohomology generator::
sage: phi.dual().iota().in_degree(0)
[1]
[1]
[1]
TESTS::
sage: T = cubical_complexes.Torus()
sage: C = T.chain_complex()
sage: H, M = T.algebraic_topological_model()
sage: C.differential(1) * H.iota().in_degree(1).column(0) == 0
True
sage: C.differential(1) * H.iota().in_degree(1).column(1) == 0
True
sage: coC = T.chain_complex(cochain=True)
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(0) == 0
True
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(1) == 0
True
"""
if not base_ring.is_field():
raise ValueError('the coefficient ring must be a field')
# The following are all dictionaries indexed by dimension.
# For each n, gens[n] is an ordered list of the n-cells generating the complex M.
gens = {}
# For each n, phi_dict[n] is a dictionary of the form {idx:
# vector}, where idx is the index of an n-cell in the list of
# n-cells in K, and vector is the image of that n-cell, as an
# element in the free module of (n+1)-chains for K.
phi_dict = {}
# For each n, pi_dict[n] is a dictionary of the same form, except
# that the target vectors should be elements of the chain complex M.
pi_dict = {}
# For each n, iota_dict[n] is a dictionary of the form {cell:
# vector}, where cell is one of the generators for M and vector is
# its image in C, as an element in the free module of n-chains.
iota_dict = {}
for n in range(K.dimension()+1):
gens[n] = []
phi_dict[n] = {}
pi_dict[n] = {}
iota_dict[n] = {}
C = K.chain_complex(base_ring=base_ring)
# old_cells: cells one dimension lower.
old_cells = []
for dim in range(K.dimension()+1):
n_cells = K.n_cells(dim)
diff = C.differential(dim)
# diff is sparse and low density. Dense matrices are faster
# over finite fields, but for low density matrices, sparse
# matrices are faster over the rationals.
if base_ring != QQ:
diff = diff.dense_matrix()
rank = len(n_cells)
old_rank = len(old_cells)
V_old = VectorSpace(base_ring, old_rank)
zero = V_old.zero_vector()
for c_idx, c in enumerate(zip(n_cells, VectorSpace(base_ring, rank).gens())):
# c is the pair (cell, the corresponding standard basis
# vector in the free module of chains). Separate its
# components, calling them c and c_vec:
c_vec = c[1]
c = c[0]
# No need to set zero values for any of the maps: we will
# assume any unset values are zero.
# From the paper: phi_dict[c] = 0.
# c_bar = c - phi(bdry(c))
c_bar = c_vec
bdry_c = diff * c_vec
# Apply phi to bdry_c and subtract from c_bar.
for (idx, coord) in bdry_c.iteritems():
try:
c_bar -= coord * phi_dict[dim-1][idx]
except KeyError:
pass
bdry_c_bar = diff * c_bar
# Evaluate pi(bdry(c_bar)).
pi_bdry_c_bar = zero
for (idx, coeff) in bdry_c_bar.iteritems():
try:
pi_bdry_c_bar += coeff * pi_dict[dim-1][idx]
except KeyError:
pass
# One small typo in the published algorithm: it says
# "if bdry(c_bar) == 0", but should say
# "if pi(bdry(c_bar)) == 0".
if not pi_bdry_c_bar:
# Append c to list of gens.
gens[dim].append(c)
# iota(c) = c_bar
iota_dict[dim][c] = c_bar
# pi(c) = c
pi_dict[dim][c_idx] = c_vec
else:
# Take any u in gens so that lambda_i = <u, pi(bdry(c_bar))> != 0.
# u_idx will be the index of the corresponding cell.
for (u_idx, lambda_i) in pi_bdry_c_bar.iteritems():
# Now find the actual cell.
u = old_cells[u_idx]
if u in gens[dim-1]:
break
# pi(c) = 0: no need to do anything about this.
for c_j_idx in range(old_rank):
# eta_ij = <u, pi(c_j)>.
try:
eta_ij = pi_dict[dim-1][c_j_idx][u_idx]
except (KeyError, IndexError):
eta_ij = 0
if eta_ij:
# Adjust phi(c_j).
try:
phi_dict[dim-1][c_j_idx] += eta_ij * lambda_i**(-1) * c_bar
except KeyError:
phi_dict[dim-1][c_j_idx] = eta_ij * lambda_i**(-1) * c_bar
# Adjust pi(c_j).
try:
pi_dict[dim-1][c_j_idx] += -eta_ij * lambda_i**(-1) * pi_bdry_c_bar
except KeyError:
pi_dict[dim-1][c_j_idx] = -eta_ij * lambda_i**(-1) * pi_bdry_c_bar
gens[dim-1].remove(u)
del iota_dict[dim-1][u]
old_cells = n_cells
# Now we have constructed the raw data for M, pi, iota, phi, so we
# have to convert that to data which can be used to construct chain
# complexes, chain maps, and chain contractions.
# M_data will contain (trivial) matrices defining the differential
# on M. Keep track of the sizes using "M_rows" and "M_cols", which are
# just the ranks of consecutive graded pieces of M.
M_data = {}
M_rows = 0
# pi_data: the matrices defining pi. Similar for iota_data and phi_data.
pi_data = {}
iota_data = {}
phi_data = {}
for n in range(K.dimension()+1):
n_cells = K.n_cells(n)
# Remove zero entries from pi_dict and phi_dict.
pi_dict[n] = {i: pi_dict[n][i] for i in pi_dict[n] if pi_dict[n][i]}
phi_dict[n] = {i: phi_dict[n][i] for i in phi_dict[n] if phi_dict[n][i]}
# Convert gens to data defining the chain complex M with
# trivial differential.
M_cols = len(gens[n])
M_data[n] = zero_matrix(base_ring, M_rows, M_cols)
M_rows = M_cols
# Convert the dictionaries for pi, iota, phi to matrices which
# will define chain maps and chain homotopies.
pi_cols = []
phi_cols = []
for (idx, c) in enumerate(n_cells):
# First pi:
if idx in pi_dict[n]:
column = vector(base_ring, M_rows)
for (entry, coeff) in pi_dict[n][idx].iteritems():
# Translate from cells in n_cells to cells in gens[n].
column[gens[n].index(n_cells[entry])] = coeff
else:
column = vector(base_ring, M_rows)
pi_cols.append(column)
# Now phi:
try:
column = phi_dict[n][idx]
except KeyError:
column = vector(base_ring, len(K.n_cells(n+1)))
phi_cols.append(column)
# Now iota:
iota_cols = [iota_dict[n][c] for c in gens[n]]
pi_data[n] = matrix(base_ring, pi_cols).transpose()
iota_data[n] = matrix(base_ring, len(gens[n]), len(n_cells), iota_cols).transpose()
phi_data[n] = matrix(base_ring, phi_cols).transpose()
M = ChainComplex(M_data, base_ring=base_ring, degree=-1)
pi = ChainComplexMorphism(pi_data, C, M)
iota = ChainComplexMorphism(iota_data, M, C)
phi = ChainContraction(phi_data, pi, iota)
return phi, M
def algebraic_topological_model_delta_complex(K, base_ring=None):
r"""
Algebraic topological model for cell complex ``K``
with coefficients in the field ``base_ring``.
This has the same basic functionality as
:func:`algebraic_topological_model`, but it also works for
`\Delta`-complexes. For simplicial and cubical complexes it is
somewhat slower, though.
INPUT:
- ``K`` -- a simplicial complex, a cubical complex, or a
`\Delta`-complex
- ``base_ring`` -- coefficient ring; must be a field
OUTPUT: a pair ``(phi, M)`` consisting of
- chain contraction ``phi``
- chain complex `M`
See :func:`algebraic_topological_model` for the main
documentation. The difference in implementation between the two:
this uses matrix and vector algebra. The other function does more
of the computations "by hand" and uses cells (given as simplices
or cubes) to index various dictionaries. Since the cells in
`\Delta`-complexes are not as nice, the other function does not
work for them, while this function relies almost entirely on the
structure of the associated chain complex.
EXAMPLES::
sage: from sage.homology.algebraic_topological_model import algebraic_topological_model_delta_complex as AT_model
sage: RP2 = simplicial_complexes.RealProjectivePlane()
sage: phi, M = AT_model(RP2, GF(2))
sage: M.homology()
{0: Vector space of dimension 1 over Finite Field of size 2,
1: Vector space of dimension 1 over Finite Field of size 2,
2: Vector space of dimension 1 over Finite Field of size 2}
sage: T = delta_complexes.Torus()
sage: phi, M = AT_model(T, QQ)
sage: M.homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
If you want to work with cohomology rather than homology, just
dualize the outputs of this function::
sage: M.dual().homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
sage: M.dual().degree_of_differential()
1
sage: phi.dual()
Chain homotopy between:
Chain complex endomorphism of Chain complex with at most 3 nonzero terms over Rational Field
and Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Rational Field
To: Chain complex with at most 3 nonzero terms over Rational Field
In degree 0, the inclusion of the homology `M` into the chain
complex `C` sends the homology generator to a single vertex::
sage: K = delta_complexes.Simplex(2)
sage: phi, M = AT_model(K, QQ)
sage: phi.iota().in_degree(0)
[0]
[0]
[1]
In cohomology, though, one needs the dual of every degree 0 cell
to detect the degree 0 cohomology generator::
sage: phi.dual().iota().in_degree(0)
[1]
[1]
[1]
TESTS::
sage: T = cubical_complexes.Torus()
sage: C = T.chain_complex()
sage: H, M = AT_model(T, QQ)
sage: C.differential(1) * H.iota().in_degree(1).column(0) == 0
True
sage: C.differential(1) * H.iota().in_degree(1).column(1) == 0
True
sage: coC = T.chain_complex(cochain=True)
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(0) == 0
True
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(1) == 0
True
"""
def conditionally_sparse(m):
"""
Return a sparse matrix if the characteristic is zero.
Multiplication of matrices with low density seems to be quicker
if the matrices are sparse, when over the rationals. Over
finite fields, dense matrices are faster regardless of
density.
"""
if base_ring == QQ:
return m.sparse_matrix()
else:
return m
if not base_ring.is_field():
raise ValueError('the coefficient ring must be a field')
# The following are all dictionaries indexed by dimension.
# For each n, gens[n] is an ordered list of the n-cells generating the complex M.
gens = {}
pi_data = {}
phi_data = {}
iota_data = {}
for n in range(-1, K.dimension()+1):
gens[n] = []
C = K.chain_complex(base_ring=base_ring)
n_cells = []
pi_cols = []
iota_cols = {}
for dim in range(K.dimension()+1):
# old_cells: cells one dimension lower.
old_cells = n_cells
# n_cells: the standard basis for the vector space C.free_module(dim).
n_cells = C.free_module(dim).gens()
diff = C.differential(dim)
# diff is sparse and low density. Dense matrices are faster
# over finite fields, but for low density matrices, sparse
# matrices are faster over the rationals.
if base_ring != QQ:
diff = diff.dense_matrix()
rank = len(n_cells)
old_rank = len(old_cells)
# Create some matrix spaces to try to speed up matrix creation.
MS_pi_t = MatrixSpace(base_ring, old_rank, len(gens[dim-1]))
pi_old = MS_pi_t.matrix(pi_cols).transpose()
iota_cols_old = iota_cols
iota_cols = {}
pi_cols_old = pi_cols
pi_cols = []
phi_old = MatrixSpace(base_ring, rank, old_rank, sparse=(base_ring==QQ)).zero()
phi_old_cols = phi_old.columns()
phi_old = conditionally_sparse(phi_old)
to_be_deleted = []
zero_vector = vector(base_ring, rank)
pi_nrows = pi_old.nrows()
for c_idx, c in enumerate(n_cells):
# c_bar = c - phi(bdry(c)):
# Avoid a bug in matrix-vector multiplication (trac 19378):
if not diff:
c_bar = c
pi_bdry_c_bar = False
else:
if base_ring == QQ:
c_bar = c - phi_old * (diff * c)
pi_bdry_c_bar = conditionally_sparse(pi_old) * (diff * c_bar)
else:
c_bar = c - phi_old * diff * c
pi_bdry_c_bar = conditionally_sparse(pi_old) * diff * c_bar
# One small typo in the published algorithm: it says
# "if bdry(c_bar) == 0", but should say
# "if pi(bdry(c_bar)) == 0".
if not pi_bdry_c_bar:
# Append c to list of gens.
gens[dim].append(c_idx)
# iota(c) = c_bar
iota_cols[c_idx] = c_bar
# pi(c) = c
pi_cols.append(c)
else:
# Take any u in gens so that lambda_i = <u, pi(bdry(c_bar))> != 0.
# u_idx will be the index of the corresponding cell.
(u_idx, lambda_i) = pi_bdry_c_bar.leading_item()
for (u_idx, lambda_i) in iteritems(pi_bdry_c_bar):
if u_idx not in to_be_deleted:
break
# This element/column needs to be deleted from gens and
# iota_old. Do that later.
to_be_deleted.append(u_idx)
# pi(c) = 0.
pi_cols.append(zero_vector)
for c_j_idx, c_j in enumerate(old_cells):
# eta_ij = <u, pi(c_j)>.
# That is, eta_ij is the u_idx entry in the vector pi_old * c_j:
eta_ij = c_j.dot_product(pi_old.row(u_idx))
if eta_ij:
# Adjust phi(c_j).
phi_old_cols[c_j_idx] += eta_ij * lambda_i**(-1) * c_bar
# Adjust pi(c_j).
pi_cols_old[c_j_idx] -= eta_ij * lambda_i**(-1) * pi_bdry_c_bar
# The matrices involved have many zero entries. For
# such matrices, using sparse matrices is faster over
# the rationals, slower over finite fields.
phi_old = matrix(base_ring, phi_old_cols, sparse=(base_ring==QQ)).transpose()
keep = vector(base_ring, pi_nrows, {i:1 for i in range(pi_nrows)
if i not in to_be_deleted})
cols = [v.pairwise_product(keep) for v in pi_cols_old]
pi_old = MS_pi_t.matrix(cols).transpose()
# Here cols is a temporary storage for the columns of iota.
cols = [iota_cols_old[i] for i in sorted(iota_cols_old.keys())]
for r in sorted(to_be_deleted, reverse=True):
del cols[r]
del gens[dim-1][r]
iota_data[dim-1] = matrix(base_ring, len(gens[dim-1]), old_rank, cols).transpose()
# keep: rows to keep in pi_cols_old. Start with all
# columns, then delete those in to_be_deleted.
keep = sorted(set(range(pi_nrows)).difference(to_be_deleted))
# Now cols is a temporary storage for columns of pi.
cols = [v.list_from_positions(keep) for v in pi_cols_old]
pi_data[dim-1] = matrix(base_ring, old_rank, len(gens[dim-1]), cols).transpose()
phi_data[dim-1] = phi_old
V_gens = VectorSpace(base_ring, len(gens[dim]))
if pi_cols:
cols = []
for v in pi_cols:
cols.append(V_gens(v.list_from_positions(gens[dim])))
pi_cols = cols
pi_data[dim] = matrix(base_ring, rank, len(gens[dim]), pi_cols).transpose()
cols = [iota_cols[i] for i in sorted(iota_cols.keys())]
iota_data[dim] = matrix(base_ring, len(gens[dim]), rank, cols).transpose()
# M_data will contain (trivial) matrices defining the differential
# on M. Keep track of the sizes using "M_rows" and "M_cols", which are
# just the ranks of consecutive graded pieces of M.
M_data = {}
M_rows = 0
for n in range(K.dimension()+1):
M_cols = len(gens[n])
M_data[n] = zero_matrix(base_ring, M_rows, M_cols)
M_rows = M_cols
M = ChainComplex(M_data, base_ring=base_ring, degree=-1)
pi = ChainComplexMorphism(pi_data, C, M)
iota = ChainComplexMorphism(iota_data, M, C)
phi = ChainContraction(phi_data, pi, iota)
return phi, M
def algebraic_topological_model(K, base_ring=None):
r"""
Algebraic topological model for cell complex ``K``
with coefficients in the field ``base_ring``.
INPUT:
- ``K`` -- either a simplicial complex or a cubical complex
- ``base_ring`` -- coefficient ring; must be a field
OUTPUT: a pair ``(phi, M)`` consisting of
- chain contraction ``phi``
- chain complex `M`
This construction appears in a paper by Pilarczyk and Réal [PR2015]_.
Given a cell complex `K` and a field `F`, there is a chain complex
`C` associated to `K` with coefficients in `F`. The *algebraic
topological model* for `K` is a chain complex `M` with trivial
differential, along with chain maps `\pi: C \to M` and `\iota: M
\to C` such that
- `\pi \iota = 1_M`, and
- there is a chain homotopy `\phi` between `1_C` and `\iota \pi`.
In particular, `\pi` and `\iota` induce isomorphisms on homology,
and since `M` has trivial differential, it is its own homology,
and thus also the homology of `C`. Thus `\iota` lifts homology
classes to their cycle representatives.
The chain homotopy `\phi` satisfies some additional properties,
making it a *chain contraction*:
- `\phi \phi = 0`,
- `\pi \phi = 0`,
- `\phi \iota = 0`.
Given an algebraic topological model for `K`, it is then easy to
compute cup products and cohomology operations on the cohomology
of `K`, as described in [GDR2003]_ and [PR2015]_.
Implementation details: the cell complex `K` must have an
:meth:`~sage.homology.cell_complex.GenericCellComplex.n_cells`
method from which we can extract a list of cells in each
dimension. Combining the lists in increasing order of dimension
then defines a filtration of the complex: a list of cells in which
the boundary of each cell consists of cells earlier in the
list. This is required by Pilarczyk and Réal's algorithm. There
must also be a
:meth:`~sage.homology.cell_complex.GenericCellComplex.chain_complex`
method, to construct the chain complex `C` associated to this
chain complex.
In particular, this works for simplicial complexes and cubical
complexes. It doesn't work for `\Delta`-complexes, though: the list
of their `n`-cells has the wrong format.
Note that from the chain contraction ``phi``, one can recover the
chain maps `\pi` and `\iota` via ``phi.pi()`` and
``phi.iota()``. Then one can recover `C` and `M` from, for
example, ``phi.pi().domain()`` and ``phi.pi().codomain()``,
respectively.
EXAMPLES::
sage: from sage.homology.algebraic_topological_model import algebraic_topological_model
sage: RP2 = simplicial_complexes.RealProjectivePlane()
sage: phi, M = algebraic_topological_model(RP2, GF(2))
sage: M.homology()
{0: Vector space of dimension 1 over Finite Field of size 2,
1: Vector space of dimension 1 over Finite Field of size 2,
2: Vector space of dimension 1 over Finite Field of size 2}
sage: T = cubical_complexes.Torus()
sage: phi, M = algebraic_topological_model(T, QQ)
sage: M.homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
If you want to work with cohomology rather than homology, just
dualize the outputs of this function::
sage: M.dual().homology()
{0: Vector space of dimension 1 over Rational Field,
1: Vector space of dimension 2 over Rational Field,
2: Vector space of dimension 1 over Rational Field}
sage: M.dual().degree_of_differential()
1
sage: phi.dual()
Chain homotopy between:
Chain complex endomorphism of Chain complex with at most 3 nonzero terms over Rational Field
and Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Rational Field
To: Chain complex with at most 3 nonzero terms over Rational Field
In degree 0, the inclusion of the homology `M` into the chain
complex `C` sends the homology generator to a single vertex::
sage: K = simplicial_complexes.Simplex(2)
sage: phi, M = algebraic_topological_model(K, QQ)
sage: phi.iota().in_degree(0)
[0]
[0]
[1]
In cohomology, though, one needs the dual of every degree 0 cell
to detect the degree 0 cohomology generator::
sage: phi.dual().iota().in_degree(0)
[1]
[1]
[1]
TESTS::
sage: T = cubical_complexes.Torus()
sage: C = T.chain_complex()
sage: H, M = T.algebraic_topological_model()
sage: C.differential(1) * H.iota().in_degree(1).column(0) == 0
True
sage: C.differential(1) * H.iota().in_degree(1).column(1) == 0
True
sage: coC = T.chain_complex(cochain=True)
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(0) == 0
True
sage: coC.differential(1) * H.dual().iota().in_degree(1).column(1) == 0
True
"""
if not base_ring.is_field():
raise ValueError('the coefficient ring must be a field')
# The following are all dictionaries indexed by dimension.
# For each n, gens[n] is an ordered list of the n-cells generating the complex M.
gens = {}
# For each n, phi_dict[n] is a dictionary of the form {idx:
# vector}, where idx is the index of an n-cell in the list of
# n-cells in K, and vector is the image of that n-cell, as an
# element in the free module of (n+1)-chains for K.
phi_dict = {}
# For each n, pi_dict[n] is a dictionary of the same form, except
# that the target vectors should be elements of the chain complex M.
pi_dict = {}
# For each n, iota_dict[n] is a dictionary of the form {cell:
# vector}, where cell is one of the generators for M and vector is
# its image in C, as an element in the free module of n-chains.
iota_dict = {}
for n in range(K.dimension()+1):
gens[n] = []
phi_dict[n] = {}
pi_dict[n] = {}
iota_dict[n] = {}
C = K.chain_complex(base_ring=base_ring)
# old_cells: cells one dimension lower.
old_cells = []
for dim in range(K.dimension()+1):
n_cells = K._n_cells_sorted(dim)
diff = C.differential(dim)
# diff is sparse and low density. Dense matrices are faster
# over finite fields, but for low density matrices, sparse
# matrices are faster over the rationals.
if base_ring != QQ:
diff = diff.dense_matrix()
rank = len(n_cells)
old_rank = len(old_cells)
V_old = VectorSpace(base_ring, old_rank)
zero = V_old.zero_vector()
for c_idx, c in enumerate(zip(n_cells, VectorSpace(base_ring, rank).gens())):
# c is the pair (cell, the corresponding standard basis
# vector in the free module of chains). Separate its
# components, calling them c and c_vec:
c_vec = c[1]
c = c[0]
# No need to set zero values for any of the maps: we will
# assume any unset values are zero.
# From the paper: phi_dict[c] = 0.
# c_bar = c - phi(bdry(c))
c_bar = c_vec
bdry_c = diff * c_vec
# Apply phi to bdry_c and subtract from c_bar.
for (idx, coord) in iteritems(bdry_c):
try:
c_bar -= coord * phi_dict[dim-1][idx]
except KeyError:
pass
bdry_c_bar = diff * c_bar
# Evaluate pi(bdry(c_bar)).
pi_bdry_c_bar = zero
for (idx, coeff) in iteritems(bdry_c_bar):
try:
pi_bdry_c_bar += coeff * pi_dict[dim-1][idx]
except KeyError:
pass
# One small typo in the published algorithm: it says
# "if bdry(c_bar) == 0", but should say
# "if pi(bdry(c_bar)) == 0".
if not pi_bdry_c_bar:
# Append c to list of gens.
gens[dim].append(c)
# iota(c) = c_bar
iota_dict[dim][c] = c_bar
# pi(c) = c
pi_dict[dim][c_idx] = c_vec
else:
# Take any u in gens so that lambda_i = <u, pi(bdry(c_bar))> != 0.
# u_idx will be the index of the corresponding cell.
for u_idx in pi_bdry_c_bar.nonzero_positions():
lambda_i = pi_bdry_c_bar[u_idx]
# Now find the actual cell.
u = old_cells[u_idx]
if u in gens[dim-1]:
break
# pi(c) = 0: no need to do anything about this.
for c_j_idx in range(old_rank):
# eta_ij = <u, pi(c_j)>.
try:
eta_ij = pi_dict[dim-1][c_j_idx][u_idx]
except (KeyError, IndexError):
eta_ij = 0
if eta_ij:
# Adjust phi(c_j).
try:
phi_dict[dim-1][c_j_idx] += eta_ij * lambda_i**(-1) * c_bar
except KeyError:
phi_dict[dim-1][c_j_idx] = eta_ij * lambda_i**(-1) * c_bar
# Adjust pi(c_j).
try:
pi_dict[dim-1][c_j_idx] += -eta_ij * lambda_i**(-1) * pi_bdry_c_bar
except KeyError:
pi_dict[dim-1][c_j_idx] = -eta_ij * lambda_i**(-1) * pi_bdry_c_bar
gens[dim-1].remove(u)
del iota_dict[dim-1][u]
old_cells = n_cells
# Now we have constructed the raw data for M, pi, iota, phi, so we
# have to convert that to data which can be used to construct chain
# complexes, chain maps, and chain contractions.
# M_data will contain (trivial) matrices defining the differential
# on M. Keep track of the sizes using "M_rows" and "M_cols", which are
# just the ranks of consecutive graded pieces of M.
M_data = {}
M_rows = 0
# pi_data: the matrices defining pi. Similar for iota_data and phi_data.
pi_data = {}
iota_data = {}
phi_data = {}
for n in range(K.dimension()+1):
n_cells = K._n_cells_sorted(n)
# Remove zero entries from pi_dict and phi_dict.
pi_dict[n] = {i: pi_dict[n][i] for i in pi_dict[n] if pi_dict[n][i]}
phi_dict[n] = {i: phi_dict[n][i] for i in phi_dict[n] if phi_dict[n][i]}
# Convert gens to data defining the chain complex M with
# trivial differential.
M_cols = len(gens[n])
M_data[n] = zero_matrix(base_ring, M_rows, M_cols)
M_rows = M_cols
# Convert the dictionaries for pi, iota, phi to matrices which
# will define chain maps and chain homotopies.
pi_cols = []
phi_cols = []
for (idx, c) in enumerate(n_cells):
# First pi:
if idx in pi_dict[n]:
column = vector(base_ring, M_rows)
for (entry, coeff) in iteritems(pi_dict[n][idx]):
# Translate from cells in n_cells to cells in gens[n].
column[gens[n].index(n_cells[entry])] = coeff
else:
column = vector(base_ring, M_rows)
pi_cols.append(column)
# Now phi:
try:
column = phi_dict[n][idx]
except KeyError:
column = vector(base_ring, len(K.n_cells(n+1)))
phi_cols.append(column)
# Now iota:
iota_cols = [iota_dict[n][c] for c in gens[n]]
pi_data[n] = matrix(base_ring, pi_cols).transpose()
iota_data[n] = matrix(base_ring, len(gens[n]), len(n_cells), iota_cols).transpose()
phi_data[n] = matrix(base_ring, phi_cols).transpose()
M = ChainComplex(M_data, base_ring=base_ring, degree=-1)
pi = ChainComplexMorphism(pi_data, C, M)
iota = ChainComplexMorphism(iota_data, M, C)
phi = ChainContraction(phi_data, pi, iota)
return phi, M
def associated_chain_complex_morphism(self,base_ring=ZZ,augmented=False,cochain=False):
"""
Returns the associated chain complex morphism of ``self``.
EXAMPLES::
sage: S = simplicial_complexes.Sphere(1)
sage: T = simplicial_complexes.Sphere(2)
sage: H = Hom(S,T)
sage: f = {0:0,1:1,2:2}
sage: x = H(f)
sage: x
Simplicial complex morphism:
From: Minimal triangulation of the 1-sphere
To: Minimal triangulation of the 2-sphere
Defn: 0 |--> 0
1 |--> 1
2 |--> 2
sage: a = x.associated_chain_complex_morphism()
sage: a
Chain complex morphism:
From: Chain complex with at most 2 nonzero terms over Integer Ring
To: Chain complex with at most 3 nonzero terms over Integer Ring
sage: a._matrix_dictionary
{0: [1 0 0]
[0 1 0]
[0 0 1]
[0 0 0], 1: [1 0 0]
[0 1 0]
[0 0 0]
[0 0 1]
[0 0 0]
[0 0 0], 2: []}
sage: x.associated_chain_complex_morphism(augmented=True)
Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Integer Ring
To: Chain complex with at most 4 nonzero terms over Integer Ring
sage: x.associated_chain_complex_morphism(cochain=True)
Chain complex morphism:
From: Chain complex with at most 3 nonzero terms over Integer Ring
To: Chain complex with at most 2 nonzero terms over Integer Ring
sage: x.associated_chain_complex_morphism(augmented=True,cochain=True)
Chain complex morphism:
From: Chain complex with at most 4 nonzero terms over Integer Ring
To: Chain complex with at most 3 nonzero terms over Integer Ring
sage: x.associated_chain_complex_morphism(base_ring=GF(11))
Chain complex morphism:
From: Chain complex with at most 2 nonzero terms over Finite Field of size 11
To: Chain complex with at most 3 nonzero terms over Finite Field of size 11
Some simplicial maps which reverse the orientation of a few simplices::
sage: g = {0:1, 1:2, 2:0}
sage: H(g).associated_chain_complex_morphism()._matrix_dictionary
{0: [0 0 1]
[1 0 0]
[0 1 0]
[0 0 0], 1: [ 0 -1 0]
[ 0 0 -1]
[ 0 0 0]
[ 1 0 0]
[ 0 0 0]
[ 0 0 0], 2: []}
sage: X = SimplicialComplex([[0, 1]], is_mutable=False)
sage: Hom(X,X)({0:1, 1:0}).associated_chain_complex_morphism()._matrix_dictionary
{0: [0 1]
[1 0], 1: [-1]}
"""
max_dim = max(self.domain().dimension(),self.codomain().dimension())
min_dim = min(self.domain().dimension(),self.codomain().dimension())
matrices = {}
if augmented is True:
m = matrix(base_ring,1,1,1)
if not cochain:
matrices[-1] = m
else:
matrices[-1] = m.transpose()
for dim in range(min_dim+1):
X_faces = list(self.domain().n_cells(dim))
Y_faces = list(self.codomain().n_cells(dim))
num_faces_X = len(X_faces)
num_faces_Y = len(Y_faces)
mval = [0 for i in range(num_faces_X*num_faces_Y)]
for i in X_faces:
y, oriented = self(i, orientation=True)
if y.dimension() < dim:
pass
else:
mval[X_faces.index(i)+(Y_faces.index(y)*num_faces_X)] = oriented
m = matrix(base_ring,num_faces_Y,num_faces_X,mval,sparse=True)
if not cochain:
matrices[dim] = m
else:
matrices[dim] = m.transpose()
for dim in range(min_dim+1,max_dim+1):
try:
l1 = len(self.codomain().n_cells(dim))
except KeyError:
l1 = 0
try:
l2 = len(self.domain().n_cells(dim))
except KeyError:
l2 = 0
m = zero_matrix(base_ring,l1,l2,sparse=True)
if not cochain:
matrices[dim] = m
else:
matrices[dim] = m.transpose()
if not cochain:
return ChainComplexMorphism(matrices,\
self.domain().chain_complex(base_ring=base_ring,augmented=augmented,cochain=cochain),\
self.codomain().chain_complex(base_ring=base_ring,augmented=augmented,cochain=cochain))
else:
return ChainComplexMorphism(matrices,\
self.codomain().chain_complex(base_ring=base_ring,augmented=augmented,cochain=cochain),\
self.domain().chain_complex(base_ring=base_ring,augmented=augmented,cochain=cochain))
def __init__(self, matrices, C, D, check=True):
"""
Create a morphism from a dictionary of matrices.
EXAMPLES::
sage: S = simplicial_complexes.Sphere(1)
sage: S
Minimal triangulation of the 1-sphere
sage: C = S.chain_complex()
sage: C.differential()
{0: [], 1: [-1 -1 0]
[ 1 0 -1]
[ 0 1 1], 2: []}
sage: f = {0:zero_matrix(ZZ,3,3),1:zero_matrix(ZZ,3,3)}
sage: G = Hom(C,C)
sage: x = G(f)
sage: x
Chain complex endomorphism of Chain complex with at most 2 nonzero terms over Integer Ring
sage: x._matrix_dictionary
{0: [0 0 0]
[0 0 0]
[0 0 0], 1: [0 0 0]
[0 0 0]
[0 0 0]}
Check that the bug in :trac:`13220` has been fixed::
sage: X = simplicial_complexes.Simplex(1)
sage: Y = simplicial_complexes.Simplex(0)
sage: g = Hom(X,Y)({0:0, 1:0})
sage: g.associated_chain_complex_morphism()
Chain complex morphism:
From: Chain complex with at most 2 nonzero terms over Integer Ring
To: Chain complex with at most 1 nonzero terms over Integer Ring
Check that an error is raised if the matrices are the wrong size::
sage: C = ChainComplex({0: zero_matrix(ZZ, 0, 1)})
sage: D = ChainComplex({0: zero_matrix(ZZ, 0, 2)})
sage: Hom(C,D)({0: matrix(1, 2, [1, 1])}) # 1x2 is the wrong size.
Traceback (most recent call last):
...
ValueError: matrix in degree 0 is not the right size
sage: Hom(C,D)({0: matrix(2, 1, [1, 1])}) # 2x1 is right.
Chain complex morphism:
From: Chain complex with at most 1 nonzero terms over Integer Ring
To: Chain complex with at most 1 nonzero terms over Integer Ring
"""
if not C.base_ring() == D.base_ring():
raise NotImplementedError('morphisms between chain complexes of different'
' base rings are not implemented')
d = C.degree_of_differential()
if d != D.degree_of_differential():
raise ValueError('degree of differential does not match')
from sage.misc.misc import uniq
degrees = uniq(list(C.differential()) + list(D.differential()))
initial_matrices = dict(matrices)
matrices = dict()
for i in degrees:
if i - d not in degrees:
if not (C.free_module_rank(i) == D.free_module_rank(i) == 0):
raise ValueError('{} and {} are not rank 0 in degree {}'.format(C, D, i))
continue
try:
matrices[i] = initial_matrices.pop(i)
except KeyError:
matrices[i] = zero_matrix(C.base_ring(),
D.differential(i).ncols(),
C.differential(i).ncols(), sparse=True)
if check:
# All remaining matrices given must be 0x0.
if not all(m.ncols() == m.nrows() == 0 for m in initial_matrices.values()):
raise ValueError('the remaining matrices are not empty')
# Check sizes of matrices.
for i in matrices:
if (matrices[i].nrows() != D.free_module_rank(i) or
matrices[i].ncols() != C.free_module_rank(i)):
raise ValueError('matrix in degree {} is not the right size'.format(i))
# Check commutativity.
for i in degrees:
if i - d not in degrees:
if not (C.free_module_rank(i) == D.free_module_rank(i) == 0):
raise ValueError('{} and {} are not rank 0 in degree {}'.format(C, D, i))
continue
if i + d not in degrees:
if not (C.free_module_rank(i+d) == D.free_module_rank(i+d) == 0):
raise ValueError('{} and {} are not rank 0 in degree {}'.format(C, D, i+d))
continue
Dm = D.differential(i) * matrices[i]
mC = matrices[i+d] * C.differential(i)
if mC != Dm:
raise ValueError('matrices must define a chain complex morphism')
self._matrix_dictionary = {}
for i in matrices:
m = matrices[i]
# Use immutable matrices because they're hashable.
m.set_immutable()
self._matrix_dictionary[i] = m
Morphism.__init__(self, Hom(C,D, ChainComplexes(C.base_ring())))
def __iter__(self):
if self.index() is infinity:
raise ValueError("infinity is not a true filter index")
if self.is_reduced():
## We only iterate positive definite matrices
## and later build the semidefinite ones
## We first find possible upper left matrices
sub2 = self._calc_iter_reduced_sub2()
sub3 = self._calc_iter_reduced_sub3()
sub4 = self._calc_iter_reduced_sub4()
t = zero_matrix(ZZ, 4)
t.set_immutable()
yield t
for a0 in range(2, 2 * self.index(), 2):
t = zero_matrix(ZZ, 4)
t[3, 3] = a0
t.set_immutable()
yield t
for (a0, a1, b01) in sub2:
t = zero_matrix(ZZ, 4)
t[2, 2] = a0
t[3, 3] = a1
t[2, 3] = b01
t[3, 2] = b01
t.set_immutable()
yield t
for (a0, a1, b01, sub3s) in sub3:
t = zero_matrix(ZZ, 4)
t[1, 1] = a0
t[2, 2] = a1
t[1, 2] = b01
t[2, 1] = b01
for (a2, b02, b12) in sub3s:
ts = copy(t)
ts[3, 3] = a2
ts[1, 3] = b02
ts[3, 1] = b02
ts[2, 3] = b12
ts[3, 2] = b12
ts.set_immutable()
yield ts
for (a0, a1, b01, sub4s) in sub4:
t = zero_matrix(ZZ, 4)
t[0, 0] = a0
t[1, 1] = a1
t[0, 1] = b01
t[1, 0] = b01
for (a2, b02, b12, sub4ss) in sub4s:
ts = copy(t)
ts[2, 2] = a2
ts[0, 2] = b02
ts[2, 0] = b02
ts[1, 2] = b12
ts[2, 1] = b12
for (a3, b03, b13, b23) in sub4ss:
tss = copy(ts)
tss[3, 3] = a3
tss[0, 1] = b01
tss[1, 0] = b01
tss[0, 2] = b02
tss[2, 0] = b02
tss[0, 3] = b03
tss[3, 0] = b03
tss.set_immutable()
yield tss
#! if self.is_reduced()
else:
## We first find possible upper left matrices
sub2 = list()
for a0 in range(2 * self.index(), 2):
for a1 in range(2 * self.index(), 2):
# obstruction for t[0,1]
B1 = isqrt(a0 * a1)
for b01 in range(-B1, B1 + 1):
sub2.append((a0, a1, b01))
sub3 = list()
for (a0, a1, b01) in sub2:
sub3s = list()
for a2 in range(2 * self.index(), 2):
# obstruction for t[0,2]
B1 = isqrt(a0 * a2)
for b02 in range(-B1, B1 + 1):
# obstruction for t[1,2]
B3 = isqrt(a1 * a2)
for b12 in range(-B3, B3 + 1):
# obstruction for the minor [0,1,2] of t
if a0 * a1 * a2 - a0 * b12**2 + 2 * b01 * b12 * b02 - b01**2 * a2 - a1 * b02**2 < 0:
continue
sub3s.append((a2, b02, b12))
sub3.append((a0, a1, b01, sub3s))
for (a0, a1, b01, sub3s) in sub3:
for (a2, b02, b12) in sub3s:
for a3 in range(2 * self.index(), 2):
# obstruction for t[0,3]
B1 = isqrt(a0 * a3)
for b03 in range(-B1, B1 + 1):
# obstruction for t[1,3]
B3 = isqrt(a1 * a3)
for b13 in range(-B3, B3 + 1):
# obstruction for the minor [0,1,3] of t
if a0 * a1 * a3 - a0 * b13**2 + 2 * b01 * b13 * b03 - b01**2 * a3 - a1 * b03**2 < 0:
continue
# obstruction for t[2,3]
B3 = isqrt(a2 * a3)
for b23 in range(-B3, B3 + 1):
# obstruction for the minor [0,2,3] of t
if a0 * a2 * a3 - a0 * b23**2 + 2 * b02 * b23 * b03 - b02**2 * a3 - a2 * b03**2 < 0:
continue
# obstruction for the minor [1,2,3] of t
if a1 * a2 * a3 - a1 * b23**2 + 2 * b12 * b23 * b13 - b12**2 * a3 - a2 * b13**2 < 0:
continue
t = matrix(ZZ,
4, [
a0, b01, b02, b03, b01, a1,
b12, b13, b02, b12, a2, b23,
b03, b13, b23, a3
],
check=False)
if t.det() < 0:
continue
t.set_immutable()
yield t
raise StopIteration
def _global_restriction_matrix(precision,
S,
weight_parity,
find_relations=False):
r"""
A matrix that maps the Fourier expansion of a Jacobi form of given precision
to their restrictions with respect to the elements of S.
INPUT:
- ``precision`` -- An instance of JacobiFormD1Filter.
- `S` -- A list of vectors.
- ``weight_parity`` -- The parity of the weight of the considered Jacobi forms.
- ``find_relation`` -- A boolean. If ``True``, then the restrictions to
nonreduced indices will also be computed.
TESTS::
sage: from psage.modform.jacobiforms.jacobiformd1_fourierexpansion import *
sage: from psage.modform.jacobiforms.jacobiformd1_fegenerators import _global_restriction_matrix
sage: precision = JacobiFormD1Filter(5, QuadraticForm(matrix(2, [2,1,1,2])))
sage: (global_restriction_matrix, row_groups, row_labels, column_labels) = _global_restriction_matrix(precision, [vector((1,0))], 12)
sage: global_restriction_matrix
[1 0 0 0 0 0 0 0 0]
[0 1 2 0 0 0 0 0 0]
[2 0 2 0 0 0 0 0 0]
[0 0 2 1 2 0 0 0 0]
[0 2 0 0 2 0 0 0 0]
[2 0 0 0 2 1 2 0 0]
[0 0 2 2 0 0 2 0 0]
[0 2 0 0 0 0 2 1 2]
[0 0 0 0 2 2 0 0 2]
sage: (row_groups, row_labels, column_labels)
([((1, 0), 1, 0, 9)], {1: {(0, 0): 0, (3, 0): 5, (3, 1): 6, (2, 1): 4, (2, 0): 3, (1, 0): 1, (4, 1): 8, (1, 1): 2, (4, 0): 7}}, [(0, (0, 0)), (1, (0, 0)), (1, (1, 1)), (2, (0, 0)), (2, (1, 1)), (3, (0, 0)), (3, (1, 1)), (4, (0, 0)), (4, (1, 1))])
"""
L = precision.jacobi_index()
weight_parity = weight_parity % 2
jacobi_indices = [L(s) for s in S]
index_filters = dict(
(m,
list(
JacobiFormD1NNFilter(
precision.index(), m, reduced=not find_relations)))
for m in Set(jacobi_indices))
column_labels = list(precision)
reductions = dict((l, list()) for l in column_labels)
for l in precision.monoid_filter():
(lred, sign) = precision.monoid().reduce(l)
reductions[lred].append((l, sign))
row_groups = [len(index_filters[m]) for m in jacobi_indices]
row_groups = [(s, m, sum(row_groups[:i]), row_groups[i])
for ((i, s), m) in zip(enumerate(S), jacobi_indices)]
row_labels = dict((m, dict((l, i)
for (i, l) in enumerate(index_filters[m])))
for m in Set(jacobi_indices))
dot_products = [
cython_lambda(
' , '.join(['int x{0}'.format(i) for i in range(len(s))]),
' + '.join(['{0} * x{1}'.format(s[i], i) for i in range(len(s))]))
for (s, _, _, _) in row_groups
]
restriction_matrix = zero_matrix(ZZ, row_groups[-1][2] + row_groups[-1][3],
len(column_labels))
for (cind, l) in enumerate(column_labels):
for ((n, r), sign) in reductions[l]:
for ((s, m, start, length),
dot_product) in zip(row_groups, dot_products):
row_labels_dict = row_labels[m]
try:
restriction_matrix[start + row_labels_dict[(n, dot_product(*r))], cind] \
+= 1 if weight_parity == 0 else sign
except KeyError:
pass
return (restriction_matrix, row_groups, row_labels, column_labels)