def update_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_object_permissions(locus_list,
request.user,
permission_level=CAN_EDIT)
request_json = json.loads(request.body)
genes_by_id, intervals, invalid_items = parse_locus_list_items(
request_json)
if invalid_items and not request_json.get('ignoreInvalidItems'):
return create_json_response({'invalidLocusListItems': invalid_items},
status=400,
reason=INVALID_ITEMS_ERROR)
update_model_from_json(locus_list, request_json, allow_unknown_keys=True)
if genes_by_id is not None:
_update_locus_list_items(locus_list, genes_by_id, intervals,
request_json, request.user)
return create_json_response({
'locusListsByGuid': {
locus_list.guid: get_json_for_locus_list(locus_list, request.user)
},
'genesById': genes_by_id or {},
})
def delete_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_object_permissions(locus_list,
request.user,
permission_level=CAN_EDIT)
delete_seqr_model(locus_list)
return create_json_response({'locusListsByGuid': {locus_list_guid: None}})
def update_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_object_permissions(locus_list, request.user, permission_level=CAN_EDIT)
request_json = json.loads(request.body)
genes_by_id, intervals, invalid_items = parse_locus_list_items(request_json)
if invalid_items and not request_json.get('ignoreInvalidItems'):
return create_json_response({'invalidLocusListItems': invalid_items}, status=400, reason=INVALID_ITEMS_ERROR)
update_model_from_json(locus_list, request_json, allow_unknown_keys=True)
if genes_by_id is not None:
_update_locus_list_items(locus_list, genes_by_id, intervals, request_json, request.user)
return create_json_response({
'locusListsByGuid': {locus_list.guid: get_json_for_locus_list(locus_list, request.user)},
'genesById': genes_by_id or {},
})
def delete_locus_list_handler(request, locus_list_guid):
locus_list = LocusList.objects.get(guid=locus_list_guid)
check_object_permissions(locus_list, request.user, permission_level=CAN_EDIT)
delete_seqr_model(locus_list)
return create_json_response({'locusListsByGuid': {locus_list_guid: None}})