def load_shape_arrays(shapename,rowname='row',colname='column'):
#--get the field names and make sure rowname and colname are found
field_names = shapefile.get_fieldnames(grid_shapename)
assert rowname in field_names
assert colname in field_names
#--get the decimal of each field - to get the array type later
grid_shp = shapefile.Reader(shapename)
header = grid_shp.dbfHeader()
h_dict = {}
for item in header:
h_dict[item[0]] = int(item[-1])
#--load all of the records as a dict
records = shapefile.load_as_dict(shapename,loadShapes=False)
#--get nrow and ncol
nrow = max(records[rowname])
ncol = max(records[colname])
#--row and column maps
row,col = records[rowname],records[colname]
#--setup a dict for all of the arrays and map the values
array_dict = {}
for key,record in records.iteritems():
decimal = h_dict[key]
if decimal == 0:
arr = np.zeros((nrow,ncol),dtype=np.int)
else:
arr = np.zeros((nrow,ncol))
print key,arr.dtype
try:
for r,c,val in zip(row,col,record):
arr[r-1,c-1] = val
array_dict[key] = arr.copy()
except:
print 'couldnt cast '+str(key)+' field to array'
return array_dict
def load_shape_arrays(shapename, rowname='row', colname='column'):
#--get the field names and make sure rowname and colname are found
field_names = shapefile.get_fieldnames(grid_shapename)
assert rowname in field_names
assert colname in field_names
#--get the decimal of each field - to get the array type later
grid_shp = shapefile.Reader(shapename)
header = grid_shp.dbfHeader()
h_dict = {}
for item in header:
h_dict[item[0]] = int(item[-1])
#--load all of the records as a dict
records = shapefile.load_as_dict(shapename, loadShapes=False)
#--get nrow and ncol
nrow = max(records[rowname])
ncol = max(records[colname])
#--row and column maps
row, col = records[rowname], records[colname]
#--setup a dict for all of the arrays and map the values
array_dict = {}
for key, record in records.iteritems():
decimal = h_dict[key]
if decimal == 0:
arr = np.zeros((nrow, ncol), dtype=np.int)
else:
arr = np.zeros((nrow, ncol))
print key, arr.dtype
try:
for r, c, val in zip(row, col, record):
arr[r - 1, c - 1] = val
array_dict[key] = arr.copy()
except:
print 'couldnt cast ' + str(key) + ' field to array'
return array_dict
import sys
import numpy as np
import shapefile
import bro
col_name = 'ibound_CS'
grid_shapename = '..\\..\\_gis\\shapes\\broward_grid_master'
shape = shapefile.Reader(grid_shapename)
fieldnames = shapefile.get_fieldnames(grid_shapename)
v_idx = fieldnames.index(col_name)
r_idx,c_idx = fieldnames.index('row'),fieldnames.index('column')
arr = np.zeros((bro.nrow,bro.ncol)) - 1.0e+10
for i in range(shape.numRecords):
rec = shape.record(i)
r,c = rec[r_idx],rec[c_idx]
val = rec[v_idx]
arr[r-1,c-1] = val
np.savetxt('ibound_CS.ref',arr,fmt=' %3.0f')
def main():
#--load well locations and pandas dataframe
well_shapename = '..\\..\\_gis\\shapes\\pws_combine'
well_points = sf.load_shape_list(well_shapename)
#shp = sf.reader(well_shapename)
#print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename,loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i,wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'],records['column']
pump = pandas.read_csv('..\\..\\_pumpage\\dataframes\\pws_filled_zeros.csv',index_col=0,parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename,ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < flow.start.year:
year = flow.start.year
dt = datetime(year=year,month=1,day=1)
line_active.append(dt)
#--head stuff
#--use bot of Q5 to check for dry cells
hds_elev = np.loadtxt(flow.ref_dir+'Q5_bot.ref')
hds_layer_idx = 0
head_file = flow.root+'.hds'
headObj = mfb.MODFLOW_Head(flow.nlay,flow.nrow,flow.ncol,head_file)
htimes = headObj.get_time_list()
#--zeta stuff
zta_layer_idx = 0
zta_elev = np.loadtxt(flow.ref_dir+'Q1_bot.ref')
zeta_file = flow.root+'.zta'
zetaObj = mfb.MODFLOW_CBB(flow.nlay,flow.nrow,flow.ncol,zeta_file)
zta_text = ' ZETAPLANE 1'
z1times = zetaObj.get_time_list(zta_text)
#zeta_file = None
#-- stress period step
sp_step = 1
plt_dir = 'png\\results\\'
#--for ffmpeg - sequentially numbered
plt_num = 1
istart = 0
q_args = []
for i,dt in enumerate(flow.sp_start):
if i >= istart and i%sp_step == 0:
print 'building args list for ',dt
try:
h_seekpoint = long(htimes[i,3])
except:
break
if zeta_file:
z_seekpoint = long(z1times[i,3])
else:
z_seekpoint = None
act_lines = []
for ldt,line in zip(line_active,lines):
if ldt <= dt:
act_lines.append(line)
act_wells = []
if i == 0:
plt_start = dt
else:
plt_start = flow.sp_start[i-sp_step]
plt_end = flow.sp_end[i]
pump_plt = pump[plt_start:plt_end]
pump_plt_sum = pump_plt.sum()
for wname,wpoint,wrow,wcol,wzbot in zip(well_names,well_points,well_rows,well_cols,well_zbots):
if wname in pump_plt.keys() and pump_plt_sum[wname] != 0:
act_wells.append(wpoint)
fig_name = plt_dir+'sp{0:03.0f}.png'.format(plt_num)
#fig_title = 'stress period '+str(i+1)+' start date '+dt.strftime('%d/%m/%Y')
fig_title = str(dt.year)
args = [fig_name,h_seekpoint,z_seekpoint,act_lines,act_wells,hds_layer_idx,zta_layer_idx,fig_title]
q_args.append(args)
plt_num += 1
jobq = mp.JoinableQueue()
#--for testing
#jobq.put_nowait(q_args[0])
#jobq.put_nowait(None)
#plot_worker(jobq,0,head_file,None,hds_elev,zta_elev)
#return
procs = []
num_procs = 6
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=plot_worker,args=(jobq,i,head_file,zeta_file,hds_elev,zta_elev))
p.daemon = True
print 'starting process',p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
#--block until all finish
for p in procs:
p.join()
print p.name,'Finished'
cmd_line = 'ffmpeg.exe -i results\sp%03d.png -r 24 demo.avi -y'
os.system(cmd_line)
return
import shapefile
shapename = '..\\_gis\\scratch\\all_K_locations_layers'
shp = shapefile.Reader(shapename)
records, shapes = shp.records(), shp.shapes()
fnames = shapefile.get_fieldnames(shapename)
lay_idx = fnames.index('k_layer')
k_idx = fnames.index('K_ftday')
#--loop once to get layer groups
layer_groups = {}
for rec, shape in zip(records, shapes):
lay = rec[lay_idx]
k = float(rec[k_idx])
point = shape.points[0]
if lay in layer_groups.keys():
layer_groups[lay][0].append(k)
layer_groups[lay][1].append(point)
else:
layer_groups[lay] = [[k], [point]]
out_dir = 'gslib\\'
for layer, [ks, points] in layer_groups.iteritems():
print layer
f = open(out_dir + layer + '.dat', 'w')
f.write(layer + '\n')
f.write('3\nX\nY\nK\n')
for pt, k in zip(points, ks):
f.write('{0:15.6F} {1:15.6F} {2:15.6F}\n'.format(pt[0], pt[1], k))
f.close()
def main():
#--load well locations and pandas dataframe
well_shapename = '..\\..\\_gis\\shapes\\pws_combine'
well_points = sf.load_shape_list(well_shapename)
#shp = sf.reader(well_shapename)
#print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename, loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i, wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'], records['column']
pump = pandas.read_csv(
'..\\..\\_pumpage\\dataframes\\pws_filled_zeros.csv',
index_col=0,
parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename, ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < flow.start.year:
year = flow.start.year
dt = datetime(year=year, month=1, day=1)
line_active.append(dt)
#--head stuff
#--use bot of Q5 to check for dry cells
hds_elev = np.loadtxt(flow.ref_dir + 'Q5_bot.ref')
hds_layer_idx = 0
head_file = flow.root + '.hds'
headObj = mfb.MODFLOW_Head(flow.nlay, flow.nrow, flow.ncol, head_file)
htimes = headObj.get_time_list()
#--zeta stuff
zta_layer_idx = 0
zta_elev = np.loadtxt(flow.ref_dir + 'Q1_bot.ref')
zeta_file = flow.root + '.zta'
zetaObj = mfb.MODFLOW_CBB(flow.nlay, flow.nrow, flow.ncol, zeta_file)
zta_text = ' ZETAPLANE 1'
z1times = zetaObj.get_time_list(zta_text)
#zeta_file = None
#-- stress period step
sp_step = 1
plt_dir = 'png\\results\\'
#--for ffmpeg - sequentially numbered
plt_num = 1
istart = 0
q_args = []
for i, dt in enumerate(flow.sp_start):
if i >= istart and i % sp_step == 0:
print 'building args list for ', dt
try:
h_seekpoint = long(htimes[i, 3])
except:
break
if zeta_file:
z_seekpoint = long(z1times[i, 3])
else:
z_seekpoint = None
act_lines = []
for ldt, line in zip(line_active, lines):
if ldt <= dt:
act_lines.append(line)
act_wells = []
if i == 0:
plt_start = dt
else:
plt_start = flow.sp_start[i - sp_step]
plt_end = flow.sp_end[i]
pump_plt = pump[plt_start:plt_end]
pump_plt_sum = pump_plt.sum()
for wname, wpoint, wrow, wcol, wzbot in zip(
well_names, well_points, well_rows, well_cols, well_zbots):
if wname in pump_plt.keys() and pump_plt_sum[wname] != 0:
act_wells.append(wpoint)
fig_name = plt_dir + 'sp{0:03.0f}.png'.format(plt_num)
#fig_title = 'stress period '+str(i+1)+' start date '+dt.strftime('%d/%m/%Y')
fig_title = str(dt.year)
args = [
fig_name, h_seekpoint, z_seekpoint, act_lines, act_wells,
hds_layer_idx, zta_layer_idx, fig_title
]
q_args.append(args)
plt_num += 1
jobq = mp.JoinableQueue()
#--for testing
#jobq.put_nowait(q_args[0])
#jobq.put_nowait(None)
#plot_worker(jobq,0,head_file,None,hds_elev,zta_elev)
#return
procs = []
num_procs = 6
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=plot_worker,
args=(jobq, i, head_file, zeta_file, hds_elev,
zta_elev))
p.daemon = True
print 'starting process', p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
#--block until all finish
for p in procs:
p.join()
print p.name, 'Finished'
cmd_line = 'ffmpeg.exe -i results\sp%03d.png -r 24 demo.avi -y'
os.system(cmd_line)
return
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i, wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'], records['column']
pump = pandas.read_csv('..\\..\\_pumpage\\pws_filled_zeros.csv',
index_col=0,
parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename, ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < bro.start.year:
year = bro.start.year
dt = datetime(year=year, month=1, day=1)
line_active.append(dt)
#--head stuff
#--use bot of layer 1 to check for dry cells
l1_bot = np.loadtxt('ref\\Q5_bot.ref')
def main(num_plots):
#--load well locations and pandas dataframe
well_shapename = '..\\..\\_gis\\shapes\\pws_combine'
well_points = sf.load_shape_list(well_shapename)
#shp = sf.reader(well_shapename)
#print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename,loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i,wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'],records['column']
pump = pandas.read_csv('..\\..\\_pumpage\\dataframes\\pws_filled_zeros.csv',index_col=0,parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename,ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < flow.start.year:
year = flow.start.year
dt = datetime(year=year,month=1,day=1)
line_active.append(dt)
#--head stuff
#--use bot of Q5 to check for dry cells
#hds_elev = np.loadtxt(flow.ref_dir+'Q5_bot.ref')
#hds_layer_idx = 0
#head_file = flow.root+'.hds'
#headObj = mfb.MODFLOW_Head(flow.nlay,flow.nrow,flow.ncol,head_file)
#htimes = headObj.get_time_list()
#--conc stuff
conc_lay_idxs = [0,5,9,11]
conc_file = 'MT3D001.UCN'
concObj = mfb.MT3D_Concentration(seawat.nlay,seawat.nrow,seawat.ncol,conc_file)
ctimes = concObj.get_time_list()
#--zeta stuff
#zta_layer_idx = 0
#zta_elev = np.loadtxt(flow.ref_dir+'Q1_bot.ref')
#zeta_file = flow.root+'.zta'
#zetaObj = mfb.MODFLOW_CBB(flow.nlay,flow.nrow,flow.ncol,zeta_file)
#zta_text = ' ZETAPLANE 1'
#z1times = zetaObj.get_time_list(zta_text)
#zeta_file = None
#-- stress period step
sp_step = 1
plt_dir = 'png\\results\\seawat\\'
#--for ffmpeg - sequentially numbered
plt_num = 1
istart = 0
q_args = []
for i,[start,end] in enumerate(zip(seawat.sp_start,seawat.sp_end)):
if i >= istart and i%sp_step == 0:
print 'building args list for stress period ending on ',end
#--find the conc output nearest the end of the stress period
try:
kper_seekpoints = ctimes[np.where(ctimes[:,2]==i+1),-1]
c_seekpoint = long(kper_seekpoints[0][-1])
except:
break
act_lines = []
for ldt,line in zip(line_active,lines):
if ldt <= start:
act_lines.append(line)
act_wells = []
if i == 0:
plt_start = start
else:
plt_start = seawat.sp_start[i-sp_step]
plt_end = seawat.sp_end[i]
pump_plt = pump[plt_start:plt_end]
pump_plt_sum = pump_plt.sum()
for wname,wpoint,wrow,wcol,wzbot in zip(well_names,well_points,well_rows,well_cols,well_zbots):
if wname in pump_plt.keys() and pump_plt_sum[wname] != 0:
act_wells.append(wpoint)
fig_name = plt_dir+'sp{0:03.0f}_conc.png'.format(plt_num)
fig_title = 'stress period '+str(i+1)+' start date '+start.strftime('%d/%m/%Y')
args = [fig_name,c_seekpoint,conc_lay_idxs,act_lines,act_wells,fig_title]
q_args.append(args)
plt_num += 1
if num_plots != None and i > num_plots:
break
jobq = mp.JoinableQueue()
#--for testing
if num_plots != None:
jobq.put_nowait(q_args[0])
jobq.put_nowait(None)
plot_worker(jobq,1,conc_file)
return
procs = []
num_procs = 3
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=plot_worker,args=(jobq,i,conc_file))
p.daemon = True
print 'starting process',p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
#--block until all finish
for p in procs:
p.join()
print p.name,'Finished'
anim_name = 'png\\demo_conc.avi'
if os.path.exists(anim_name):
os.remove(anim_name)
cmd_line = 'ffmpeg.exe -i png\\results\\seawat\\sp%03d_conc.png -r 24 '+anim_name+' -y'
os.system(cmd_line)
return
#
##--run fac2real
#fac2real_args[0] = fac_name
#fac2real_args[2] = klocs_name
#fac2real_args[-3] = k_name
#args = '\n'.join(fac2real_args)
#f = open(facin_name,'w')
#f.write(args)
#f.close()
#os.system('fac2real.exe <'+facin_name+' >'+facout_name)
##break
#--add the interpolated K to the grid shapefile
shapename = '..\\_gis\\shapes\\broward_grid_master'
grid = shapefile.Reader(shapename)
names = shapefile.get_fieldnames(shapename, ignorecase=True)
row_idx, col_idx = names.index('ROW'), names.index('COLUMN')
#--load the k arrays
print 'loading k and std arrays'
k_arrays = []
for name in k_names:
k = pu.load_wrapped_format(bro.nrow, bro.ncol, name)
#np.savetxt(name,k,fmt=' %15.6E')
k_arrays.append(k)
std_arrays = []
for name in std_names:
std = pu.load_wrapped_format(bro.nrow, bro.ncol, name)
#np.savetxt(name,std,fmt=' %15.6E')
std_arrays.append(std)
import sys
import numpy as np
import shapefile
import bro
col_name = 'ibound_CS'
grid_shapename = '..\\..\\_gis\\shapes\\broward_grid_master'
shape = shapefile.Reader(grid_shapename)
fieldnames = shapefile.get_fieldnames(grid_shapename)
v_idx = fieldnames.index(col_name)
r_idx, c_idx = fieldnames.index('row'), fieldnames.index('column')
arr = np.zeros((bro.nrow, bro.ncol)) - 1.0e+10
for i in range(shape.numRecords):
rec = shape.record(i)
r, c = rec[r_idx], rec[c_idx]
val = rec[v_idx]
arr[r - 1, c - 1] = val
np.savetxt('ibound_CS.ref', arr, fmt=' %3.0f')
def main(num_plots):
#--load well locations and pandas dataframe
well_shapename = '..\\..\\_gis\\shapes\\pws_combine'
well_points = sf.load_shape_list(well_shapename)
#shp = sf.reader(well_shapename)
#print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename, loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i, wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'], records['column']
pump = pandas.read_csv(
'..\\..\\_pumpage\\dataframes\\pws_filled_zeros.csv',
index_col=0,
parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename, ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < flow.start.year:
year = flow.start.year
dt = datetime(year=year, month=1, day=1)
line_active.append(dt)
#--head stuff
#--use bot of Q5 to check for dry cells
#hds_elev = np.loadtxt(flow.ref_dir+'Q5_bot.ref')
#hds_layer_idx = 0
#head_file = flow.root+'.hds'
#headObj = mfb.MODFLOW_Head(flow.nlay,flow.nrow,flow.ncol,head_file)
#htimes = headObj.get_time_list()
#--conc stuff
conc_lay_idxs = [0, 5, 9, 11]
conc_file = 'MT3D001.UCN'
concObj = mfb.MT3D_Concentration(seawat.nlay, seawat.nrow, seawat.ncol,
conc_file)
ctimes = concObj.get_time_list()
#--zeta stuff
#zta_layer_idx = 0
#zta_elev = np.loadtxt(flow.ref_dir+'Q1_bot.ref')
#zeta_file = flow.root+'.zta'
#zetaObj = mfb.MODFLOW_CBB(flow.nlay,flow.nrow,flow.ncol,zeta_file)
#zta_text = ' ZETAPLANE 1'
#z1times = zetaObj.get_time_list(zta_text)
#zeta_file = None
#-- stress period step
sp_step = 1
plt_dir = 'png\\results\\seawat\\'
#--for ffmpeg - sequentially numbered
plt_num = 1
istart = 0
q_args = []
for i, [start, end] in enumerate(zip(seawat.sp_start, seawat.sp_end)):
if i >= istart and i % sp_step == 0:
print 'building args list for stress period ending on ', end
#--find the conc output nearest the end of the stress period
try:
kper_seekpoints = ctimes[np.where(ctimes[:, 2] == i + 1), -1]
c_seekpoint = long(kper_seekpoints[0][-1])
except:
break
act_lines = []
for ldt, line in zip(line_active, lines):
if ldt <= start:
act_lines.append(line)
act_wells = []
if i == 0:
plt_start = start
else:
plt_start = seawat.sp_start[i - sp_step]
plt_end = seawat.sp_end[i]
pump_plt = pump[plt_start:plt_end]
pump_plt_sum = pump_plt.sum()
for wname, wpoint, wrow, wcol, wzbot in zip(
well_names, well_points, well_rows, well_cols, well_zbots):
if wname in pump_plt.keys() and pump_plt_sum[wname] != 0:
act_wells.append(wpoint)
fig_name = plt_dir + 'sp{0:03.0f}_conc.png'.format(plt_num)
fig_title = 'stress period ' + str(
i + 1) + ' start date ' + start.strftime('%d/%m/%Y')
args = [
fig_name, c_seekpoint, conc_lay_idxs, act_lines, act_wells,
fig_title
]
q_args.append(args)
plt_num += 1
if num_plots != None and i > num_plots:
break
jobq = mp.JoinableQueue()
#--for testing
if num_plots != None:
jobq.put_nowait(q_args[0])
jobq.put_nowait(None)
plot_worker(jobq, 1, conc_file)
return
procs = []
num_procs = 3
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=plot_worker, args=(jobq, i, conc_file))
p.daemon = True
print 'starting process', p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
#--block until all finish
for p in procs:
p.join()
print p.name, 'Finished'
anim_name = 'png\\demo_conc.avi'
if os.path.exists(anim_name):
os.remove(anim_name)
cmd_line = 'ffmpeg.exe -i png\\results\\seawat\\sp%03d_conc.png -r 24 ' + anim_name + ' -y'
os.system(cmd_line)
return
def main():
aprefix = 'rch\\rch_'
#aprefix = 'et\\et_'
print 'loading forcing dataframe'
df = pandas.read_csv('NEXRAD.csv', index_col=0, parse_dates=True)
#df = pandas.read_csv('PET.csv',index_col=0,parse_dates=True)
df[df < 0.0] = 0.0
df_keys = list(df.keys())
print 'loading grid shapefile info'
grid_shapename = '..\\shapes\\tsala_grid_nexrad'
grid_shape = shapefile.Reader(grid_shapename)
fieldnames = shapefile.get_fieldnames(grid_shapename, ignorecase=True)
row_idx, col_idx = fieldnames.index('ROW'), fieldnames.index('COLUMN_')
pix_idx, frac_idx = fieldnames.index('NEX_PIX'), fieldnames.index(
'NEX_FRAC')
pixel_map = {}
pixel_numbers = []
nrow, ncol = -1.0E+10, -1.0E+10
for i in range(grid_shape.numRecords):
if i % 500 == 0:
print i, 'of', grid_shape.numRecords, '\r',
rec = grid_shape.record(i)
pix, frac = rec[pix_idx], rec[frac_idx]
r, c = rec[row_idx], rec[col_idx]
if r > nrow: nrow = r
if c > ncol: ncol = c
idx_tup = (r - 1, c - 1)
pf_list = []
if len(pix) > 0:
pf_list = []
for p, f in zip(pix.split(','), frac.split(',')):
p = str(p)
f = float(f)
pf_list.append((p, f))
pixel_map[idx_tup] = pf_list
#--check for missing pixels
missing = []
for idx_tup, pf_list in pixel_map.iteritems():
for p, f in pf_list:
if p not in df_keys and p not in missing:
missing.append(p)
if len(missing) > 0:
print 'missing data for', len(missing), ' pixels'
print len(df_keys)
for m in missing:
print m
raise Exception()
print 'processing dataframe rows'
q_args = []
for dt, pixel_values in df.iterrows():
print dt
aname = aprefix + dt.strftime('%Y%m%d') + '.ref'
q_args.append([aname, pixel_values])
jobq = mp.JoinableQueue()
procs = []
num_procs = 3
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=worker, args=(i, nrow, ncol, pixel_map, jobq))
p.daemon = True
print 'starting process', p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
for p in procs:
p.join()
print p.name, 'Finished'
import os
import numpy as np
import pandas
from shapely.geometry import Point
import shapefile
airport_pt = Point([935003, 632657])
select_radius = 5280.0 * 4.0
#--first get the nwis conc data
nwis_shapename = '..\\_gis\\scratch\\broward_nwis_sites_reclen_gw'
fields = shapefile.get_fieldnames(nwis_shapename)
conc_idx = fields.index('conc_len')
siteno_idx = fields.index('site_no')
sitename_idx = fields.index('station_nm')
hole_idx = fields.index('hole_depth')
wdepth_idx = fields.index('well_depth')
shp = shapefile.Reader(nwis_shapename)
shapes = shp.shapes()
records = shp.records()
wr = shapefile.writer_like(nwis_shapename)
#--only use those conc records that have > 0 length
sel_records, sel_points = [], []
for shape, rec in zip(shapes, records):
shp_pt = Point(shape.points[0])
if (airport_pt.distance(shp_pt) < select_radius) and (int(rec[conc_idx]) >
0):
sel_records.append(rec)
def main():
adir = 'rch\\'
out_prefix = 'summary\\rch_'
field_prefix = 'nex_'
out_shapename = '..\\shapes\\tsala_nexrad_summary'
#adir = 'et\\'
#out_prefix = 'summary\\et_'
#field_prefix = 'pet_'
#out_shapename = '..\\shapes\\tsala_pet_summary'
nrow,ncol = 384,369
afiles = os.listdir(adir)
years = {}
dts = []
for a in afiles:
dt = datetime.strptime(a.split('.')[0].split('_')[1],'%Y%m%d')
dts.append(dt)
if dt.year in years.keys():
years[dt.year].append(adir+a)
else:
years[dt.year] = [adir+a]
day = timedelta(days=1)
dts.sort()
#for i,today in enumerate(dts[1:]):
# if today - dts[i] > day:
# print 'missing day',today
start = datetime(year=2000,month=1,day=1)
end = datetime(year=2011,month=12,day=31)
today = start
while today < end:
if today not in dts:
print 'missing day',today
today += day
return
q_args = []
yr_out = {}
for yr,alist in years.iteritems():
aname = out_prefix+str(yr)+'.ref'
yr_out[yr] = aname
q_args.append([aname,alist])
jobq = mp.JoinableQueue()
resultq = mp.Queue()
#--for testing
#jobq.put_nowait(q_args[0])
#jobq.put_nowait(None)
#worker(0,nrow,ncol,jobq,resultq)
#return
procs = []
num_procs = 3
for i in range(num_procs):
#--pass the woker function jobq and a PID
p = mp.Process(target=worker,args=(i,nrow,ncol,jobq,resultq))
p.daemon = True
print 'starting process',p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
for p in procs:
p.join()
print p.name,'Finished'
#--add summary arrs to shapefile
print 'adding summary info to grid shapefile'
shapename = '..\\shapes\\join_all2'
shp = shapefile.Reader(shapename)
shapes = shp.shapes()
fieldnames = shapefile.get_fieldnames(shapename)
row_idx,col_idx = fieldnames.index('row'),fieldnames.index('column_')
wr = shapefile.Writer()
wr.field('row',fieldType='N',size=10,decimal=0)
wr.field('column',fieldType='N',size=10,decimal=0)
yr_list = years.keys()
yr_list.sort()
yr_avgs = []
for yr in yr_list:
wr.field(field_prefix+str(yr),fieldType='N',size=20,decimal=10)
a = np.fromfile(yr_out[yr],dtype=np.float32)
a.resize(nrow,ncol)
yr_avgs.append(a)
for i,shape in enumerate(shapes):
if i % 500 == 0:
print i,len(shapes),'\r',
rec = shp.record(i)
row,col = rec[row_idx],rec[col_idx]
rec = [row,col]
for yr_avg in yr_avgs:
rec.append(yr_avg[row-1,col-1])
wr.poly([shape.points],shapeType=shape.shapeType)
wr.record(rec)
wr.save(out_shapename)
return
#--load a list of RIV locs and concentrtaions
#--into a dict that is keyed in the row-col tuple
f = open('..\\..\\_BCDPEP\\BCDPEP_reach_conc.dat','r')
f.readline()
tidal_conc = {}
for line in f:
raw = line.strip().split(',')
tidal_conc[int(raw[0])] = float(raw[1])
f.close()
print 'loading swr reach - concentration info'
shapename = '..\\..\\_gis\\scratch\\sw_reaches_conn_swrpolylines_2'
records = shapefile.load_as_dict(shapename,loadShapes=False)
fnames = shapefile.get_fieldnames(shapename)
#print fnames
swr_conc = {}
#for r,c,strnum in zip(records['ROW'],records['COLUMN'],records['SRC_struct']):
for reach,strnum,source_reach in zip(records['REACH'],records['SRC_struct'],records['SRC_reach']):
#--tidal=brackish
if strnum == -1:
swr_conc[reach] = tidal_conc[source_reach]
#swr_conc[reach] = brackish_conc
#--fresh
else:
swr_conc[reach] = fresh_conc
print 'loading SWR-output river info'
riv_filename = flow.root+'.riv'
import numpy as np
import pandas
import shapefile
print 'loading grid shapefile info'
grid_shapename = '..\\shapes\\tsala_grid_nexrad'
grid_shape = shapefile.Reader(grid_shapename)
fieldnames = shapefile.get_fieldnames(grid_shapename,ignorecase=True)
row_idx,col_idx = fieldnames.index('ROW'),fieldnames.index('COLUMN_')
pix_idx,frac_idx = fieldnames.index('NEX_PIX'),fieldnames.index('NEX_FRAC')
pixel_map = {}
pixel_numbers = []
nrow,ncol = -1.0E+10,-1.0E+10
for i in range(grid_shape.numRecords):
if i % 500 == 0:
print i,'of',grid_shape.numRecords,'\r',
rec = grid_shape.record(i)
pix,frac = rec[pix_idx],rec[frac_idx]
r,c = rec[row_idx],rec[col_idx]
if r > nrow: nrow = r
if c > ncol: ncol = c
idx_tup = (r-1,c-1)
pf_list = []
if len(pix) > 0:
pf_list = []
for p,f in zip(pix.split(','),frac.split(',')):
p = int(p)
f = float(f)
pf_list.append((p,f))
rch_dts.append(month)
for efile in ets_files:
#dt = datetime.strptime(efile.split('.')[0].split('_')[-1],'%Y%m%d')
month = int(efile.split('.')[0].split('_')[-1])
ets_dts.append(month)
rain,evap = {},{}
for sday,eday in zip(flow.sp_start,flow.sp_end):
rain[eday] = '#DATASET 7B RAIN\nOPEN/CLOSE '+rch_dir+rch_files[rch_dts.index(sday.month)] + ' {0:10.5f} (BINARY) -1\n'.format(flow.rch_mult)
evap[eday] = '#DATASET 8B EVAP\nOPEN/CLOSE '+ets_dir+ets_files[ets_dts.index(sday.month)] + ' {0:10.5f} (BINARY) -1\n'.format(flow.ets_mult)
#--swrpre polyline shapefile with all the info
swr_shapename = '..\\..\\_gis\\scratch\\sw_reaches_conn_SWRpolylines_2'
shp = shapefile.Reader(swr_shapename)
fieldnames = shapefile.get_fieldnames(swr_shapename)
for i,name in enumerate(fieldnames):
print i,name
#--map of where attributes are in the dbf - painful
idx = {'reach':22,'iroute':14,'reachgroup':23,'row':21,'column':20,'length':27,'conn':25,'nconn':24,'active':12,'str_num':10,'ibnd':16,'SRC_reach':3}
#-create reach instances
reaches,shp_records = swr.load_reaches_from_shape(swr_shapename,idx)
#--turn off source reaches 549 and 550 - they are too influential
for i,[r,rec] in enumerate(zip(reaches,shp_records)):
if rec[idx['SRC_reach']] in [549,550]:
reaches[i].active_dt = datetime(year=3000,month=1,day=1)
mpl.rcParams['font.monospace'] = 'Courier New'
mpl.rcParams['pdf.compression'] = 0
mpl.rcParams['pdf.fonttype'] = 42
ticksize = 6
mpl.rcParams['legend.fontsize'] = 6
mpl.rcParams['axes.labelsize'] = 8
mpl.rcParams['xtick.labelsize'] = ticksize
mpl.rcParams['ytick.labelsize'] = ticksize
#--load well locations and pandas dataframe
well_shapename = '..\\..\\_gis\\shapes\\pws_combine'
well_points = sf.load_shape_list(well_shapename)
#shp = sf.reader(well_shapename)
print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename,loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i,wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'],records['column']
pump = pandas.read_csv('..\\..\\_pumpage\\pws_filled_zeros.csv',index_col=0,parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename,ignorecase=True)
#print sf.get_fieldnames(well_shapename)
records = sf.load_as_dict(well_shapename,loadShapes=False)
well_names = records['DPEP_NAME']
well_zbots = records['zbot']
float_zbots = []
for i,wb in enumerate(well_zbots):
float_zbots.append(float(wb))
well_zbots = np.array(float_zbots)
well_rows, well_cols = records['row'],records['column']
pump = pandas.read_csv('..\\..\\_pumpage\\pws_filled_zeros.csv',index_col=0,parse_dates=True)
#--load lines and active dates
line_shapename = '..\\..\\_gis\shapes\sw_reaches'
lines = sf.load_shape_list(line_shapename)
shp = sf.Reader(line_shapename)
fnames = sf.get_fieldnames(line_shapename,ignorecase=True)
#for i,fn in enumerate(fnames):
# print i,fn
a_idx = fnames.index('ACTIVE_ST')
line_active = []
for i in range(shp.numRecords):
rec = shp.record(i)
year = int(rec[a_idx])
if year < bro.start.year:
year = bro.start.year
dt = datetime(year=year,month=1,day=1)
line_active.append(dt)
#--head stuff
#--use bot of layer 1 to check for dry cells
def main():
aprefix = "rch\\rch_"
# aprefix = 'et\\et_'
print "loading forcing dataframe"
df = pandas.read_csv("NEXRAD.csv", index_col=0, parse_dates=True)
# df = pandas.read_csv('PET.csv',index_col=0,parse_dates=True)
df[df < 0.0] = 0.0
df_keys = list(df.keys())
print "loading grid shapefile info"
grid_shapename = "..\\shapes\\tsala_grid_nexrad"
grid_shape = shapefile.Reader(grid_shapename)
fieldnames = shapefile.get_fieldnames(grid_shapename, ignorecase=True)
row_idx, col_idx = fieldnames.index("ROW"), fieldnames.index("COLUMN_")
pix_idx, frac_idx = fieldnames.index("NEX_PIX"), fieldnames.index("NEX_FRAC")
pixel_map = {}
pixel_numbers = []
nrow, ncol = -1.0e10, -1.0e10
for i in range(grid_shape.numRecords):
if i % 500 == 0:
print i, "of", grid_shape.numRecords, "\r",
rec = grid_shape.record(i)
pix, frac = rec[pix_idx], rec[frac_idx]
r, c = rec[row_idx], rec[col_idx]
if r > nrow:
nrow = r
if c > ncol:
ncol = c
idx_tup = (r - 1, c - 1)
pf_list = []
if len(pix) > 0:
pf_list = []
for p, f in zip(pix.split(","), frac.split(",")):
p = str(p)
f = float(f)
pf_list.append((p, f))
pixel_map[idx_tup] = pf_list
# --check for missing pixels
missing = []
for idx_tup, pf_list in pixel_map.iteritems():
for p, f in pf_list:
if p not in df_keys and p not in missing:
missing.append(p)
if len(missing) > 0:
print "missing data for", len(missing), " pixels"
print len(df_keys)
for m in missing:
print m
raise Exception()
print "processing dataframe rows"
q_args = []
for dt, pixel_values in df.iterrows():
print dt
aname = aprefix + dt.strftime("%Y%m%d") + ".ref"
q_args.append([aname, pixel_values])
jobq = mp.JoinableQueue()
procs = []
num_procs = 3
for i in range(num_procs):
# --pass the woker function jobq and a PID
p = mp.Process(target=worker, args=(i, nrow, ncol, pixel_map, jobq))
p.daemon = True
print "starting process", p.name
p.start()
procs.append(p)
for q in q_args:
jobq.put(q)
for p in procs:
jobq.put(None)
for p in procs:
p.join()
print p.name, "Finished"