def testReportCreation (self):
""" Returned dictionary should be correct and have the same length, name as test files """
zipPath = os.path.join (os.getcwd(), "tests", "zip_files")
zipList = fastqc_reports.get_file_list (zipPath, True)
dirPath = os.path.join (os.getcwd(), "tests", "report_folders")
dirList = fastqc_reports.get_file_list (dirPath, False)
zipDict = fastqc_reports.combine_reports (zipList, True)
dirDict = fastqc_reports.combine_reports (dirList, False)
self.assertIsInstance (zipDict, dict)
self.assertIsInstance (dirDict, dict)
self.assertEqual (len(zipDict), 5)
self.assertEqual (len(dirDict), 3)
self.assertIn ("test", zipDict)
self.assertIn ("001_f", dirDict)
self.assertEqual (len (zipDict["test"]), 12)
self.assertEqual (len (dirDict["001_f"]), 12)
self.assertEqual (zipDict["test"]['Basic Statistics'], 'PASS')
self.assertEqual (dirDict["001_f"]['Basic Statistics'], 'PASS')
def testListFiles (self):
"""Given folder should contain needable files"""
# Test works only if calles from parent directory
path = os.getcwd()
no_files = os.path.join (path, "tests/no_files")
zip_files = os.path.join (path, "tests/zip_files")
folder_files = os.path.join (path, "tests/report_folders")
# Make folders for this test
if not os.path.exists(no_files): os.mkdir (no_files)
# Error if empty folder is given
self.assertRaises (fastqc_reports.TypeError, fastqc_reports.get_file_list, no_files, False)
# Error if folder with no report .zip files
self.assertRaises(fastqc_reports.TypeError, fastqc_reports.get_file_list, folder_files, True)
# Error if folder without report folders
self.assertRaises(fastqc_reports.TypeError, fastqc_reports.get_file_list, zip_files, False)
# Return exact numbers of files in the folder
self.assertEqual (len (fastqc_reports.get_file_list (zip_files, True)), 5)
self.assertEqual (len (fastqc_reports.get_file_list (folder_files, False)), 3)
os.rmdir (no_files)
