Exemplo n.º 1
0
def _copyFolder(syn, entity, destinationId, mapping=None, skipCopyAnnotations=False, **kwargs):
    """
    Copies synapse folders

    :param entity:              A synapse ID of a Folder entity

    :param destinationId:       Synapse ID of a project/folder that the folder wants to be copied to
    
    :param skipCopyAnnotations: Skips copying the annotations
                                Default is False
    """
    oldFolder = syn.get(entity)
    updateExisting = kwargs.get('updateExisting', False)

    if mapping is None:
        mapping = dict()
    # CHECK: If Folder name already exists, raise value error
    if not updateExisting:
        existingEntity = syn.findEntityId(oldFolder.name, parent=destinationId)
        if existingEntity is not None:
            raise ValueError('An entity named "%s" already exists in this location. Folder could not be copied'
                             % oldFolder.name)

    newFolder = Folder(name=oldFolder.name, parent=destinationId)
    if not skipCopyAnnotations:
        newFolder.annotations = oldFolder.annotations
    newFolder = syn.store(newFolder)
    entities = syn.getChildren(entity)
    for ent in entities:
        _copyRecursive(syn, ent['id'], newFolder.id, mapping, skipCopyAnnotations=skipCopyAnnotations, **kwargs)
    return newFolder.id
Exemplo n.º 2
0
def _copyFolder(syn, entity, destinationId, mapping=None, skipCopyAnnotations=False, **kwargs):
    """
    Copies synapse folders

    :param entity:              A synapse ID of a Folder entity

    :param destinationId:       Synapse ID of a project/folder that the folder wants to be copied to
    
    :param skipCopyAnnotations: Skips copying the annotations
                                Default is False
    """
    oldFolder = syn.get(entity)
    updateExisting = kwargs.get('updateExisting', False)

    if mapping is None:
        mapping = dict()
    # CHECK: If Folder name already exists, raise value error
    if not updateExisting:
        existingEntity = syn.findEntityId(oldFolder.name, parent=destinationId)
        if existingEntity is not None:
            raise ValueError('An entity named "%s" already exists in this location. Folder could not be copied'
                             % oldFolder.name)

    newFolder = Folder(name=oldFolder.name, parent=destinationId)
    if not skipCopyAnnotations:
        newFolder.annotations = oldFolder.annotations
    newFolder = syn.store(newFolder)
    entities = syn.getChildren(entity)
    for ent in entities:
        _copyRecursive(syn, ent['id'], newFolder.id, mapping, skipCopyAnnotations=skipCopyAnnotations, **kwargs)
    return newFolder.id
Exemplo n.º 3
0
def _copyFolder(syn, entity, destinationId, mapping=dict(), **kwargs):
    """
    Copies synapse folders

    :param entity:          A synapse ID of a Folder entity

    :param destinationId:   Synapse ID of a project/folder that the folder wants to be copied to
    
    :param excludeTypes:    Accepts a list of entity types (file, table, link) which determines which entity types to not copy.
                            Defaults to an empty list.
    """
    oldFolder = syn.get(entity)
    #CHECK: If Folder name already exists, raise value error
    search = syn.query('select name from entity where parentId == "%s"' % destinationId)
    for i in search['results']:
        if i['entity.name'] == oldFolder.name:
            raise ValueError('An item named "%s" already exists in this location. Folder could not be copied'%oldFolder.name)

    newFolder = Folder(name = oldFolder.name,parent= destinationId)
    newFolder.annotations = oldFolder.annotations
    newFolder = syn.store(newFolder)
    entities = syn.chunkedQuery('select id, name from entity where parentId=="%s"'% entity)
    for ent in entities:
        copied = _copyRecursive(syn, ent['entity.id'],newFolder.id,mapping, **kwargs)
    return(newFolder.id)