def _copyFolder(syn, entity, destinationId, mapping=None, skipCopyAnnotations=False, **kwargs):
"""
Copies synapse folders
:param entity: A synapse ID of a Folder entity
:param destinationId: Synapse ID of a project/folder that the folder wants to be copied to
:param skipCopyAnnotations: Skips copying the annotations
Default is False
"""
oldFolder = syn.get(entity)
updateExisting = kwargs.get('updateExisting', False)
if mapping is None:
mapping = dict()
# CHECK: If Folder name already exists, raise value error
if not updateExisting:
existingEntity = syn.findEntityId(oldFolder.name, parent=destinationId)
if existingEntity is not None:
raise ValueError('An entity named "%s" already exists in this location. Folder could not be copied'
% oldFolder.name)
newFolder = Folder(name=oldFolder.name, parent=destinationId)
if not skipCopyAnnotations:
newFolder.annotations = oldFolder.annotations
newFolder = syn.store(newFolder)
entities = syn.getChildren(entity)
for ent in entities:
_copyRecursive(syn, ent['id'], newFolder.id, mapping, skipCopyAnnotations=skipCopyAnnotations, **kwargs)
return newFolder.id
def _copyFolder(syn, entity, destinationId, mapping=None, skipCopyAnnotations=False, **kwargs):
"""
Copies synapse folders
:param entity: A synapse ID of a Folder entity
:param destinationId: Synapse ID of a project/folder that the folder wants to be copied to
:param skipCopyAnnotations: Skips copying the annotations
Default is False
"""
oldFolder = syn.get(entity)
updateExisting = kwargs.get('updateExisting', False)
if mapping is None:
mapping = dict()
# CHECK: If Folder name already exists, raise value error
if not updateExisting:
existingEntity = syn.findEntityId(oldFolder.name, parent=destinationId)
if existingEntity is not None:
raise ValueError('An entity named "%s" already exists in this location. Folder could not be copied'
% oldFolder.name)
newFolder = Folder(name=oldFolder.name, parent=destinationId)
if not skipCopyAnnotations:
newFolder.annotations = oldFolder.annotations
newFolder = syn.store(newFolder)
entities = syn.getChildren(entity)
for ent in entities:
_copyRecursive(syn, ent['id'], newFolder.id, mapping, skipCopyAnnotations=skipCopyAnnotations, **kwargs)
return newFolder.id
def _copyFolder(syn, entity, destinationId, mapping=dict(), **kwargs):
"""
Copies synapse folders
:param entity: A synapse ID of a Folder entity
:param destinationId: Synapse ID of a project/folder that the folder wants to be copied to
:param excludeTypes: Accepts a list of entity types (file, table, link) which determines which entity types to not copy.
Defaults to an empty list.
"""
oldFolder = syn.get(entity)
#CHECK: If Folder name already exists, raise value error
search = syn.query('select name from entity where parentId == "%s"' % destinationId)
for i in search['results']:
if i['entity.name'] == oldFolder.name:
raise ValueError('An item named "%s" already exists in this location. Folder could not be copied'%oldFolder.name)
newFolder = Folder(name = oldFolder.name,parent= destinationId)
newFolder.annotations = oldFolder.annotations
newFolder = syn.store(newFolder)
entities = syn.chunkedQuery('select id, name from entity where parentId=="%s"'% entity)
for ent in entities:
copied = _copyRecursive(syn, ent['entity.id'],newFolder.id,mapping, **kwargs)
return(newFolder.id)
