def main():
parallel = True
workers = 8
writeCSV = True
chunk_size = 30
# mesh_sizes = np.linspace(10, 5000, num = 50)
# mesh_sizes = np.linspace(10, 200, num = 2, dtype = int)
# mesh_sizes = np.logspace(10, 14, base = 2, num = 40) # = [1024, 16384]
# Output of np.geomspace(100, 15000, num = 40, dtype = int) , not available at neon
mesh_sizes = np.array([ 100, 113, 129, 147, 167, 190, 216, 245, 279,
317, 361, 410, 467, 531, 604, 687, 781, 888,
1010, 1148, 1306, 1485, 1688, 1920, 2183, 2482, 2823,
3210, 3650, 4150, 4719, 5366, 6102, 6939, 7890, 8972,
10202, 11601, 13191, 15000])
# Resampling of the output above
# mesh_sizes += np.array([ 106.5, 138. , 178.5, 230.5, 298. , 385.5, 499. ,
# 645.5, 834.5, 1079. , 1395.5, 1804. , 2332.5, 3016.5,
# 3900. , 5042.5, 6520.5, 8431. , 10901.5, 14095.5])
# some more data points
more_points = np.array([ 106, 138, 178, 230, 298, 385, 499, 645, 834,
1079, 1395, 1804, 2332, 3016, 3900, 5042, 6520, 8431,
10901, 14095])
mesh_sizes = np.concatenate([mesh_sizes, more_points])
# mesh_sizes = np.array([100, 200])
bfs = [basisfunctions.Gaussian, basisfunctions.ThinPlateSplines,
basisfunctions.VolumeSplines, basisfunctions.MultiQuadrics,
basisfunctions.CompactPolynomialC0, basisfunctions.CompactThinPlateSplineC2]
RBFs = [rbf.NoneConsistent, rbf.SeparatedConsistent]
tfs = [testfunctions.Highfreq(), testfunctions.Lowfreq(), testfunctions.Jump(), testfunctions.Constant(1)]
ms = [4, 6, 8, 12, 16]
print("Minimum padding needed to avoid boundary effects =", 1/np.min(mesh_sizes) * max(ms))
params = []
for mesh_size, RBF, bf, tf, m in itertools.product(mesh_sizes, RBFs, bfs, tfs, ms):
if (not bf.has_shape_param) and (m != ms[0]):
# skip iteration when the function has no shape parameter and it's not the first iteration in m
continue
if not bf.has_shape_param:
m = 0
params.append({"mesh_size" : mesh_size, "RBF" : RBF, "basisfunction" : bf, "testfunction" : tf, "m" : m})
# params = itertools.chain(
# itertools.product(mesh_sizes, RBFs,
# [basisfunctions.ThinPlateSplines, basisfunctions.VolumeSplines],
# tfs, [0]),
# itertools.product(mesh_sizes, RBFs,
# [basisfunctions.Gaussian],
# tfs, [4, 6, 8, 10, 14]),
# itertools.product(mesh_sizes, RBFs,
# [basisfunctions.MultiQuadrics],
# tfs, [0.1, 0.5, 1, 1.5])
# )
try:
df = pd.read_csv("h_convergence.csv", index_col = "h")
print("Read in data set of size ", len(df))
params = filter_existing(params, df)
except OSError:
df = pd.DataFrame()
print("Created new data set.")
global runTotal
runTotal = len(params)
global runCounter
runCounter = multiprocessing.Value("i", 0) # i is type id for integer
chunks = [params[i:i + chunk_size] for i in range(0, len(params), chunk_size)]
for chunk in chunks:
results = []
if parallel:
with concurrent.futures.ProcessPoolExecutor(max_workers = workers) as executor:
results = executor.map(unpack_args_wrapper, chunk)
else:
for p in chunk:
results.append(kernel(**p))
print("Chunk computed, writing...")
df = df.append(pd.DataFrame(list(results)).set_index("h"))
write(df, writeCSV)
write(df, writeCSV) # write out, also if we filtered everything
print(df)
epsilon = np.sqrt(-np.log(1e-9)) / (m * s)
else:
epsilon = m * s
BFs.append(bf(shape_parameter=epsilon))
epses.append(epsilon)
print("max h =", max(spaces), ", min h =", min(spaces), ", max eps =",
max(epses), ", min eps =", min(epses))
return BFs
test_mesh = np.linspace(0, 1, 5000)
ms = [4, 6, 8, 10, 12]
tf_const = testfunctions.Constant(1)
tf_hf = testfunctions.Highfreq()
BF = Gaussian
df = pd.DataFrame()
orders = np.arange(4, 64, 1)
element_size = 0.0625
for order, m in itertools.product(orders, ms):
gc_points = GaussChebyshev_1D(order=order,
element_size=element_size,
domain_size=1,
domain_start=0)
print("Order =", order, ", elementSize =", element_size, "mesh size =",
len(gc_points), ", m =", m)
spacing = mesh.spacing(gc_points)
""" Compares polynomial with increasing degree on a number of test functions on a normal sized test mesh and a slighty enlarged one. """
import numpy as np, matplotlib.pyplot as plt, pandas as pd
import basisfunctions, rbf, testfunctions
from mesh import GaussChebyshev_1D
from basisfunctions import Gaussian
norm = lambda x: np.linalg.norm(x, ord=np.inf)
BF = basisfunctions.Gaussian
tfs = [
testfunctions.Highfreq(),
testfunctions.Lowfreq(),
testfunctions.Constant(1),
testfunctions.Jump()
]
in_mesh = np.linspace(0, 1, 100)
test_mesh0 = np.linspace(0, 1, 20000)
test_mesh1 = np.linspace(-0.1, 1.1, 20000)
bf = BF(BF.shape_param_from_m(6, in_mesh))
cols = [
str(tf) + "_" + l for l in ["InfError", "InfErrorLargerMesh"] for tf in tfs
]
df = pd.DataFrame(columns=["degree"] + cols, dtype=np.float64)
df = df.set_index("degree")
def plot_rmse_cond():
""" Plots over a range of shape parameters. """
in_mesh = np.linspace(1, 4, 192)
# in_mesh = GaussChebyshev(12, 0.25, 4, 1)
tf = testfunctions.Highfreq()
in_vals = tf(in_mesh)
test_mesh = np.linspace(1, 4, 2000)
ms = np.linspace(1, 20, 50)
separated = []
integrated = []
no_pol = []
separated_res = []
no_pol_res = []
sep_fitresc = []
for m in ms:
print("Working on m =", m)
bf = Gaussian(Gaussian.shape_param_from_m(m, in_mesh))
separated.append(SeparatedConsistent(bf, in_mesh, in_vals, False))
integrated.append(IntegratedConsistent(bf, in_mesh, in_vals))
no_pol.append(NoneConsistent(bf, in_mesh, in_vals, False))
separated_res.append(SeparatedConsistent(bf, in_mesh, in_vals, True))
no_pol_res.append(NoneConsistent(bf, in_mesh, in_vals, True))
sep_fitresc.append(
SeparatedConsistentFitted(bf, in_mesh, in_vals, True))
fig, ax1 = plt.subplots()
ax1.loglog([i.RMSE(tf, test_mesh) for i in no_pol],
[i.condC for i in no_pol],
label="No Polynomial")
ax1.loglog([i.RMSE(tf, test_mesh) for i in integrated],
[i.condC for i in integrated],
label="Integrated Polynomial")
ax1.loglog([i.RMSE(tf, test_mesh) for i in separated],
[i.condC for i in separated],
label="Separated Polynomial")
ax1.loglog([i.RMSE(tf, test_mesh) for i in no_pol_res],
[i.condC for i in no_pol_res],
label="No polynomial, rescaled")
ax1.loglog([i.RMSE(tf, test_mesh) for i in separated_res],
[i.condC for i in separated_res],
label="Separated polynomial, rescaled")
ax1.loglog([i.RMSE(tf, test_mesh) for i in sep_fitresc],
[i.condC for i in sep_fitresc],
label="Separated, fitted, rescaled")
ax1.set_ylabel("Condition")
ax1.set_xlabel("RMSE")
ax1.annotate("better",
weight="bold",
size="large",
xycoords="axes fraction",
xy=(0.05, 0.05),
xytext=(0.25, 0.25),
arrowprops={
"width": 5,
"headwidth": 10,
"shrink": 30
})
ax1.set_xlim([5e-8, 0.1])
ax1.legend()
# plt.grid()
# plt.savefig("rmse_cond.pdf")
plt.show()
import numpy as np, matplotlib.pyplot as plt, pandas as pd
import rbf, rbf_qr, basisfunctions, testfunctions, mesh
from ipdb import set_trace
norm = lambda x: np.linalg.norm(x, ord=np.inf)
def func(x):
return np.exp(-np.abs(x - 3)**2) + 2
# tf = testfunctions.Highfreq()
tf = lambda x: testfunctions.Highfreq()(x * 0.5 + 0.5)
# tf = func
BF = basisfunctions.Gaussian
test_mesh = np.linspace(-0.6, 0.6, 4000)
# test_mesh = np.linspace(0.2, 0.8, 4000)
test_vals = tf(test_mesh)
orders = np.arange(4, 128, 1)
# element_size = 0.0625
res = []
for order in orders:
in_mesh = mesh.GaussChebyshev_1D(order=order,
element_size=0.25,
domain_size=2,
domain_start=-1)
# in_mesh = np.polynomial.chebyshev.chebgauss(order)[0]
