def _index(self, dirPath):
for file in os.listdir(dirPath):
if not file.endswith(".plp"):
continue
id = Uniprot.strip(file)
if id :
self.index[id] = dirPath + "/" + file
def get(self, string = None, header=None, aminoAcidSeq=None):
id = Uniprot.strip(string)
try :
if not id:
raise noIdError()
if not self.index[id]:
raise noIndexError(id)
except noIdError:
print "No protein identifier found to search tmhmm index from string " + string
return None
except noIndexError as e:
print "No file found in index for protein identifier " + e.id + " striped from string " + string
return None
stateList = self.parse(self.index[id], id)
return stateList
