def init_ui(self):
# Window creation ==================================================================
self.setWindowTitle("MRI_GUI")
self.setWindowIcon(QIcon(os.path.join(self.iconsDir, 'brain.png')))
self.statusBar().showMessage('ready')
# Menu Bar =========================================================================
act_exit = QAction('&Exit', self)
act_exit.setShortcut('Ctrl+Q')
act_exit.setStatusTip('Exit application')
act_exit.triggered.connect(self.quit_menu)
brainsuite = QAction('&BrainSuite', self)
brainsuite.triggered.connect(self.open_external_gui)
dsi_studio = QAction('&dsi_studio', self)
dsi_studio.triggered.connect(self.open_external_gui)
freesurfer = QAction('&freeview', self)
freesurfer.triggered.connect(self.open_external_gui)
slicer = QAction('&Slicer', self)
slicer.triggered.connect(self.open_external_gui)
trackvis = QAction('&trackvis', self)
slicer.triggered.connect(self.open_external_gui)
menubar = self.menuBar()
file_menu = menubar.addMenu('&File')
file_menu.addAction(act_exit)
file_menu = menubar.addMenu('&External GUIs')
file_menu.addAction(brainsuite)
file_menu.addAction(dsi_studio)
file_menu.addAction(freesurfer)
file_menu.addAction(slicer)
file_menu.addAction(trackvis)
# GUI layout =======================================================================
# Base widget is the parent of each sub-widget within the GUI, it holds the files info
self.baseWidget = BaseWidget(self)
# Show Main Window
self.setCentralWidget(self.baseWidget)
self.resize(1600, 900)
self.show()
def __init__(self):
super().__init__()
# Subdirectories of MRI_GUI ========================================================
# instance directory of sub-folders, they will be modifiable through the GUI
self.dir_dic = dict()
self.dir_dic['base_dir'] = os.path.dirname(os.path.realpath(__file__))
self.dir_dic['icons_dir'] = os.path.join(self.dir_dic['base_dir'],
'icons')
self.dir_dic['data_dir'] = '/mnt/data'
self.dir_dic['templates_dir'] = '/mnt/data/templates'
# when functions don't accept output files as options we will output by
# default to a temporary directory and move the files
# self.dir_dic['temp_dir'] = os.path.join('/tmp', 'MRI_temp')
self.dir_dic['temp_dir'] = os.path.join('/mnt/data', 'MRI_temp')
if not os.path.isdir(self.dir_dic['temp_dir']):
os.mkdir(self.dir_dic['temp_dir'])
# Bids Parser initialization =======================================================
self.bids = Parser()
self.bids.walk_path(self.dir_dic['data_dir'])
# UI Initialization ================================================================
# Window creation
self.setWindowTitle("MRI_GUI")
self.setWindowIcon(
QIcon(os.path.join(self.dir_dic['icons_dir'], 'brain.png')))
self.statusBar().showMessage('ready')
# Menu Bar
act_exit = QAction('&Exit', self)
act_exit.setShortcut('Ctrl+Q')
act_exit.setStatusTip('Exit application')
act_exit.triggered.connect(self.quit_menu)
slicer = QAction('&Slicer', self)
slicer.triggered.connect(self.open_external_gui)
trackvis = QAction('&trackvis', self)
trackvis.triggered.connect(self.open_external_gui)
menu_bar = self.menuBar()
file_menu = menu_bar.addMenu('&File')
file_menu.addAction(act_exit)
file_menu = menu_bar.addMenu('&External GUIs')
file_menu.addAction(slicer)
file_menu.addAction(trackvis)
# GUI layout
# Base widget is the parent of each sub-widget within the GUI: ToolsMenu, ToolsInterface and FileNav
# passing the directory dictionary and the bids parser handle
self.base_widget = BaseWidget(self, self.dir_dic, self.bids)
# Show Main Window
self.setCentralWidget(self.base_widget)
self.resize(1600, 900)
self.setFixedSize(self.size())
self.show()
