def plotGene(self, x, y, gene=None, group_id=None):
"""plot a gene at x,y."""
if gene:
group_id = gene.mOrthologId
colour, format = self.mMapGroup2Colour[group_id]
filled, shape = format.split("-")
if filled == "filled":
fill = "rgb(%i,%i,%i)" % colour
stroke = "rgb(%i,%i,%i)" % BLACK
stroke_width = 1
elif filled == "open":
fill = "rgb(%i,%i,%i)" % WHITE
stroke = "rgb(%i,%i,%i)" % colour
stroke_width = self.mBlockSize / 2
if shape == "circle":
ee = SVGdraw.circle(x, y, self.mBlockSize, fill=fill, stroke=stroke, stroke_width=stroke_width)
elif shape == "box":
ee = SVGdraw.rect(
x - self.mBlockSize,
y - self.mBlockSize,
2 * self.mBlockSize,
2 * self.mBlockSize,
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "lefttriangle":
ee = SVGdraw.polygon(
(
(x - self.mBlockSize, y),
(x + self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize),
),
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "righttriangle":
ee = SVGdraw.polygon(
(
(x - self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y),
(x - self.mBlockSize, y + self.mBlockSize),
),
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "uptriangle":
ee = SVGdraw.polygon(
(
(x, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize),
(x - self.mBlockSize, y + self.mBlockSize),
),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2,
)
elif shape == "downtriangle":
ee = SVGdraw.polygon(
(
(x, y + self.mBlockSize),
(x + self.mBlockSize, y - self.mBlockSize),
(x - self.mBlockSize, y - self.mBlockSize),
),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2,
)
return ee
def plotGene(self, x, y, gene=None, group_id=None):
"""plot a gene at x,y."""
if gene:
group_id = gene.mOrthologId
colour, format = self.mMapGroup2Colour[group_id]
filled, shape = format.split("-")
if filled == "filled":
fill = "rgb(%i,%i,%i)" % colour
stroke = "rgb(%i,%i,%i)" % BLACK
stroke_width = 1
elif filled == "open":
fill = "rgb(%i,%i,%i)" % WHITE
stroke = "rgb(%i,%i,%i)" % colour
stroke_width = self.mBlockSize / 2
if shape == "circle":
ee = SVGdraw.circle(x,
y,
self.mBlockSize,
fill=fill,
stroke=stroke,
stroke_width=stroke_width)
elif shape == "box":
ee = SVGdraw.rect(x - self.mBlockSize,
y - self.mBlockSize,
2 * self.mBlockSize,
2 * self.mBlockSize,
fill=fill,
stroke=stroke,
stroke_width=stroke_width)
elif shape == "lefttriangle":
ee = SVGdraw.polygon(((x - self.mBlockSize, y),
(x + self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize)),
fill=fill,
stroke=stroke,
stroke_width=stroke_width)
elif shape == "righttriangle":
ee = SVGdraw.polygon(((x - self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y),
(x - self.mBlockSize, y + self.mBlockSize)),
fill=fill,
stroke=stroke,
stroke_width=stroke_width)
elif shape == "uptriangle":
ee = SVGdraw.polygon(((x, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize),
(x - self.mBlockSize, y + self.mBlockSize)),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2)
elif shape == "downtriangle":
ee = SVGdraw.polygon(((x, y + self.mBlockSize),
(x + self.mBlockSize, y - self.mBlockSize),
(x - self.mBlockSize, y - self.mBlockSize)),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2)
return ee
