def test_create_report(self):
''' Tests the creation of the final report file '''
# We need to first create the complete metrics dictionary
metrics_file = resource_filename(__name__, "data/nist_metrics.msqc")
nist_metrics = parse_metrics._extract_nist_metrics(metrics_file)
# Add generic metrics
nist_metrics['generic'] = parse_metrics._extract_generic_metrics(self.rawfile, time.time())
# Create report (move to the QC directory, otherwise template is not found
restore_path = os.getcwd()
os.chdir('QC')
run_msqc_pipeline._create_report(self.temp_folder, self.rawfilebase, nist_metrics)
# Test for presence of the report file
report_file = '{0}/{1}'.format(self.temp_folder, 'index.html')
self.failUnless(os.path.exists(report_file))
# Return to the test directory
os.chdir(restore_path)
def test_extract_generic_metrics(self):
''' Checks the few generic metrics that are shown on each report '''
# Rawfile in this case is only used to get the file size, so substituted by another 'large' file
rawfile = self.mzxmlfile
# Sleep for one second, this should result in a runtime of 1sec
# Note: test failure can be caused by interfering processes increasing runtime
time.sleep(1)
# Current date / time formatting
ctime = time.gmtime()
date = '{year}/{month}/{day} - {hour}:{min}'.format(year=time.strftime("%Y", ctime),
month=time.strftime("%b", ctime),
day=time.strftime("%d", ctime),
hour=time.strftime("%H", ctime),
min=time.strftime("%M", ctime))
generic_metrics = parse_metrics._extract_generic_metrics(rawfile, self.t_start)
self.assertEquals(generic_metrics, {'date': date, 'runtime': '0:00:01', 'f_size': ['File Size (MB)', '97.8']})
