def test_c_terminals_with_end(self):
residues = orderfinder.extract_cterminus(
self.data_dir, self.features, self.features_by_id["STAUR_3982"])
assert residues == {
'STAUR_3972': 'ES',
'STAUR_3983': 'DS',
'STAUR_3984': 'DS',
'STAUR_3985': 'DS'
}
def test_c_terminals_no_end(self):
residues = orderfinder.extract_cterminus(self.data_dir, self.features,
"")
assert residues == {
'STAUR_3972': 'ES',
'STAUR_3982': 'GK',
'STAUR_3983': 'DS',
'STAUR_3984': 'DS',
'STAUR_3985': 'DS'
}
def test_c_terminals_with_end(
self): # TODO: move to integration or mock muscle
residues = orderfinder.extract_cterminus(
self.data_dir, self.features, self.features_by_id["STAUR_3982"])
assert residues == {
'STAUR_3972': 'ES',
'STAUR_3983': 'DS',
'STAUR_3984': 'DS',
'STAUR_3985': 'DS'
}