def test_bed2interval(self):
test_file = os.path.join(self.out_dir, "test.interval")
bam_file = test_data.BAM_FILE
bed_file = test_data.BED_FILE
out_file = bed2interval(bam_file, bed_file, out_file=test_file)
self.assertTrue(file_exists(out_file))
def test_bed2interval(self):
tmpfile = NamedTemporaryFile()
out_file = bed2interval(self.in_file, self.bed, out_file=tmpfile.name)
self.assertTrue(filecmp.cmp(self.correct_file, out_file))
def test_bed2interval(self):
tmpfile = NamedTemporaryFile()
out_file = bed2interval(self.in_file, self.bed,
out_file=tmpfile.name)
self.assertTrue(filecmp.cmp(self.correct_file, out_file))
