def test_bed2interval(self): test_file = os.path.join(self.out_dir, "test.interval") bam_file = test_data.BAM_FILE bed_file = test_data.BED_FILE out_file = bed2interval(bam_file, bed_file, out_file=test_file) self.assertTrue(file_exists(out_file))
def test_bed2interval(self): tmpfile = NamedTemporaryFile() out_file = bed2interval(self.in_file, self.bed, out_file=tmpfile.name) self.assertTrue(filecmp.cmp(self.correct_file, out_file))