def getServices(self, field, selected_only = False):
""" Returns a list of Analysis Services keyed by POC and Category
selected_only - set this to return only checked services (for view widget)
returns
{('poc_id', 'Point Of Capture'):
{('cat_id', 'Category Title'): [('serviceUID','service Title'), ..]
}
}
"""
pc = getToolByName(self, 'portal_catalog')
allservices = [p.getObject() for p in pc(portal_type = "AnalysisService", sort_on='sortable_title')]
selectedservices = getattr(field, field.accessor)()
res = {}
for poc_id in POINTS_OF_CAPTURE.keys():
poc_title = POINTS_OF_CAPTURE.getValue(poc_id)
res[(poc_id, poc_title)] = {}
if selected_only:
services = selectedservices
else:
services = allservices
for service in services:
cat = (service.getCategoryUID(), service.getCategoryName())
poc = (service.getPointOfCapture(), POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()))
srv = (service.UID(), service.Title())
if not res[poc].has_key(cat): res[poc][cat] = []
res[poc][cat].append(srv)
return res
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not(getSecurityManager().checkPermission(EditResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle',
show_categories=show_cats)
t.form_id = "ar_manage_results_%s" % poc
t.allow_edit = True
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_select_column = True
poc_value = POINTS_OF_CAPTURE.getValue(poc)
self.tables[poc_value] = t.contents_table()
self.checkInstrumentsValidity()
return self.template()
def _analysis_data(self, analysis):
""" Returns a dict that represents the analysis
"""
decimalmark = analysis.aq_parent.aq_parent.getDecimalMark()
keyword = analysis.getKeyword()
andict = {
'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': analysis.getScientificName(),
'accredited': analysis.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(analysis.getPointOfCapture())),
'category': to_utf8(analysis.getCategoryTitle()),
'result': analysis.getResult(),
'unit': to_utf8(analysis.getUnit()),
'formatted_unit': format_supsub(to_utf8(analysis.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.isRetest(),
'remarks': to_utf8(analysis.getRemarks()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() if hasattr(
analysis, 'getReferenceType') else None,
'worksheet': None,
'specs': {},
'formatted_specs': '',
'review_state': api.get_workflow_status_of(analysis),
}
andict['refsample'] = analysis.getSample().id \
if IReferenceAnalysis.providedBy(analysis) \
else analysis.getRequestID()
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
andict['outofrange'] = is_out_of_range(analysis)[0]
return andict
def service_info(self, service):
ret = {
"Category": service.getCategory().Title(),
"Category_uid": service.getCategory().UID(),
"Service": service.Title(),
"Service_uid": service.UID(),
"PointOfCapture": service.getPointOfCapture(),
"PointOfCapture_title": POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()),
}
return ret
def service_info(self, service):
ret = {
"Category": service.getCategory().Title(),
"Category_uid": service.getCategory().UID(),
"Service": service.Title(),
"Service_uid": service.UID(),
"Keyword": service.getKeyword(),
"PointOfCapture": service.getPointOfCapture(),
"PointOfCapture_title": POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()),
}
return ret
def walk(deps):
for service_uid, service_deps in deps.items():
service = rc.lookupObject(service_uid)
category = service.getCategory()
cat = '%s_%s' % (category.UID(), category.Title())
poc = '%s_%s' % (service.getPointOfCapture(), POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()))
srv = '%s_%s' % (service.UID(), service.Title())
if not result.has_key(poc): result[poc] = {}
if not result[poc].has_key(cat): result[poc][cat] = []
result[poc][cat].append(srv)
if service_deps:
walk(service_deps)
def __call__(self):
ar = self.context
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = AnalysesView(ar,
self.request,
getPointOfCapture = poc)
t.allow_edit = False
t.show_select_column = False
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def __call__(self):
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Add an Analysis request creation button
mtool = get_tool('portal_membership', context=self.context)
if mtool.checkPermission(AddAnalysisRequest, self.context):
self.context_actions[_('Add Analysis Request')] = \
{'url': "ar_add?ar_count=1",
'icon': '++resource++bika.lims.images/add.png'}
## render header table
self.header_table = HeaderTableView(self.context, self.request)
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [
{
'id': 'empty'
},
] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture=poc,
sort_on='getId')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
return self.template()
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not (getSecurityManager().checkPermission(EditResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
sort_on='title',
show_categories=show_cats,
getAnalysisRequestUID=ar.UID())
t.form_id = "ar_manage_results_%s" % poc
t.allow_edit = True
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_select_column = True
poc_value = POINTS_OF_CAPTURE.getValue(poc)
self.tables[poc_value] = t.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in [
'retracted', 'to_be_verified', 'verified'
]:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.context.plone_utils.addPortalMessage(
message, 'warning')
self.checkInstrumentsValidity()
return self.template()
def __call__(self):
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
## render header table
self.header_table = HeaderTableView(self.context, self.request)
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [
{
'id': 'empty'
},
] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
return self.template()
def walk(deps):
for depserv_uid, depserv_deps in deps.items():
if depserv_uid == uid:
continue
depserv = services[depserv_uid]
category = depserv.getCategory()
cat = '%s_%s' % (category.UID(), category.Title())
poc = '%s_%s' % \
(depserv.getPointOfCapture(),
POINTS_OF_CAPTURE.getValue(depserv.getPointOfCapture()))
srv = '%s_%s' % (depserv.UID(), depserv.Title())
if not deps.has_key(poc): deps[poc] = {}
if not deps[poc].has_key(cat): deps[poc][cat] = []
deps[poc][cat].append(srv)
if depserv_deps:
walk(depserv_deps)
def walk(deps):
for depserv_uid, depserv_deps in deps.items():
if depserv_uid == uid:
continue
depserv = services[depserv_uid]
category = depserv.getCategory()
cat = '%s_%s' % (category.UID(), category.Title())
poc = '%s_%s' % \
(depserv.getPointOfCapture(),
POINTS_OF_CAPTURE.getValue(depserv.getPointOfCapture()))
srv = '%s_%s' % (depserv.UID(), depserv.Title())
if not deps.has_key(poc): deps[poc] = {}
if not deps[poc].has_key(cat): deps[poc][cat] = []
deps[poc][cat].append(srv)
if depserv_deps:
walk(depserv_deps)
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not(getSecurityManager().checkPermission(EditResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(ar,
self.request,
getPointOfCapture=poc,
sort_on='title',
show_categories=show_cats,
getRequestUID=ar.UID())
t.form_id = "ar_manage_results_%s" % poc
t.allow_edit = True
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_select_column = True
poc_value = POINTS_OF_CAPTURE.getValue(poc)
self.tables[poc_value] = t.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(), 'review_state')
if status not in ['retracted','to_be_verified','verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.context.plone_utils.addPortalMessage(message, 'warning')
self.checkInstrumentsValidity()
return self.template()
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not(getSecurityManager().checkPermission(ManageResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = AnalysesView(ar,
self.request,
getPointOfCapture = poc)
t.allow_edit = True
t.review_states[0]['transitions'] = ['submit', 'retract', 'verify']
t.show_select_column = True
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def _get_categorized_services(self, ar):
self.any_accredited = False
self.services = {}
analyses = ar.getAnalyses(full_objects=True,
review_state=self.publish_states)
analyses.sort(lambda x, y: cmp(x.Title().lower(), y.Title().lower()))
for analysis in analyses:
service = analysis.getService()
poc = to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()))
cat = to_utf8(service.getCategoryTitle())
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
if self.check_previous:
self.get_previous_results(analysis)
if service not in self.services[poc][cat]:
self.services[poc][cat].append(service)
if service.getAccredited():
self.any_accredited = True
def __call__(self):
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
## render header table
self.header_table = HeaderTableView(self.context, self.request)
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [{'id': 'empty'},] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture = poc,
sort_on = 'getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{'id':'submit'},
{'id':'retract'},
{'id':'verify'}]
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def _get_categorized_qcservices(self, ar):
self.qcservices = {}
for qcanalysis in ar.getQCAnalyses():
service = qcanalysis.getService()
qctype = ''
if qcanalysis.portal_type == 'DuplicateAnalysis':
qctype = "d"
elif qcanalysis.portal_type == 'ReferenceAnalysis':
qctype = qcanalysis.getReferenceType()
else:
continue
if qctype not in self.qcservices:
self.qcservices[qctype] = {}
poc = to_utf8(
POINTS_OF_CAPTURE.getValue(service.getPointOfCapture()))
if poc not in self.qcservices[qctype]:
self.qcservices[qctype][poc] = {}
cat = to_utf8(service.getCategoryTitle())
if cat not in self.qcservices[qctype][poc]:
self.qcservices[qctype][poc][cat] = []
# if service not in self.qcservices[qctype][poc][cat]:
self.qcservices[qctype][poc][cat].append(
{'service': service,
'analysis': qcanalysis})
def _analysis_data(self, analysis, decimalmark=None):
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'isnumber': isnumber(analysis.getResult()),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
else:
# Get the specs directly from the analysis. The getResultsRange
# function already takes care about which are the specs to be used:
# AR, client or lab.
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def _analysis_data(self, analysis, decimalmark=None):
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'isnumber': isnumber(analysis.getResult()),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(
ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
elif analysis.portal_type == 'DuplicateAnalysis':
specs = analysis.getAnalysisSpecs()
else:
ar = analysis.aq_parent
specs = ar.getPublicationSpecification()
if not specs or keyword not in specs.getResultsRangeDict():
specs = analysis.getAnalysisSpecs()
specs = specs.getResultsRangeDict().get(keyword, {}) \
if specs else {}
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(
specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(
analysis,
analysis.getResult(),
decimalmark=decimalmark,
sciformat=int(scinot))
# Return specs of current analysis
andict['specs_dict'] = analysis.getSpecification().getResultsRangeDict(
).get(analysis.id)
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
laboratory = self.context.bika_setup.laboratory
BatchEmail = self.context.bika_setup.getBatchEmail()
BatchFax = self.context.bika_setup.getBatchFax()
# group analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or \
'fax' in self.pub_pref and BatchFax or 1
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
# render template to utf-8
ar_results = self.ar_results().encode("utf-8")
# XXX
ar_debug_name = '%s_%s.html' % \
(self.analysis_requests[0].Title(), self.action)
open(join(Globals.INSTANCE_HOME,'var', ar_debug_name),
"w").write(ar_results)
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def __call__(self):
form = self.request.form
bc = getToolByName(self.context, 'bika_catalog')
bsc = getToolByName(self.context, 'bika_setup_catalog')
checkPermission = self.context.portal_membership.checkPermission
getAuthenticatedMember = self.context.portal_membership.getAuthenticatedMember
workflow = getToolByName(self.context, 'portal_workflow')
ars = self.context.getAnalysisRequests()
sample = self.context
## Create header_table data rows
ar_links = ", ".join([
"<a href='%s'>%s</a>" % (ar.absolute_url(), ar.Title())
for ar in ars
])
sp = self.context.getSamplePoint()
st = self.context.getSampleType()
if workflow.getInfoFor(self.context,
'cancellation_state') == "cancelled":
allow_sample_edit = False
else:
edit_states = ['to_be_sampled', 'to_be_preserved', 'sample_due']
allow_sample_edit = checkPermission(ManageSamples, self.context) \
and workflow.getInfoFor(self.context, 'review_state') in edit_states
SamplingWorkflowEnabled =\
self.context.bika_setup.getSamplingWorkflowEnabled()
samplers = getUsers(sample, ['Sampler', 'LabManager', 'Manager'])
samplingdeviations = DisplayList(
[(sd.UID, sd.title) for sd \
in bsc(portal_type = 'SamplingDeviation',
inactive_state = 'active')])
self.header_columns = 3
self.header_rows = [
{
'id': 'ClientReference',
'title': _('Client Reference'),
'allow_edit': self.allow_edit,
'value': self.context.getClientReference(),
'condition': True,
'type': 'text'
},
{
'id': 'ClientSampleID',
'title': _('Client SID'),
'allow_edit': self.allow_edit,
'value': self.context.getClientSampleID(),
'condition': True,
'type': 'text'
},
{
'id': 'Requests',
'title': _('Requests'),
'allow_edit': False,
'value': ar_links,
'condition': True,
'type': 'text'
},
{
'id': 'SampleType',
'title': _('Sample Type'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': st and st.Title() or '',
'condition': True,
'type': 'text',
'required': True
},
{
'id': 'SampleMatrix',
'title': _('Sample Matrix'),
'allow_edit': False,
'value': st.getSampleMatrix() and st.getSampleMatrix().Title()
or '',
'condition': True,
'type': 'text'
},
{
'id': 'SamplePoint',
'title': _('Sample Point'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': sp and sp.Title() or '',
'condition': True,
'type': 'text'
},
{
'id': 'Creator',
'title': PMF('Creator'),
'allow_edit': False,
'value': self.user_fullname(self.context.Creator()),
'condition': True,
'type': 'text'
},
{
'id': 'Composite',
'title': _('Composite'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': self.context.getComposite(),
'condition': True,
'type': 'boolean'
},
{
'id': 'AdHoc',
'title': _('Ad-Hoc'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': self.context.getAdHoc(),
'condition': True,
'type': 'boolean'
},
{
'id': 'DateCreated',
'title': PMF('Date Created'),
'allow_edit': False,
'value': self.context.created(),
'formatted_value':
self.ulocalized_time(self.context.created()),
'condition': True,
'type': 'text'
},
{
'id':
'SamplingDate',
'title':
_('Sampling Date'),
'allow_edit':
self.allow_edit and allow_sample_edit,
'value':
self.ulocalized_time(self.context.getSamplingDate()),
'formatted_value':
self.ulocalized_time(self.context.getSamplingDate()),
'condition':
True,
'class':
'datepicker',
'type':
'text'
},
{
'id':
'DateSampled',
'title':
_('Date Sampled'),
'allow_edit':
self.allow_edit and allow_sample_edit,
'value':
sample.getDateSampled()
and self.ulocalized_time(sample.getDateSampled()) or '',
'formatted_value':
sample.getDateSampled()
and self.ulocalized_time(sample.getDateSampled()) or '',
'condition':
SamplingWorkflowEnabled,
'class':
'datepicker',
'type':
'text',
'required':
True
},
{
'id': 'Sampler',
'title': _('Sampler'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': sample.getSampler(),
'formatted_value': sample.getSampler(),
'condition': SamplingWorkflowEnabled,
'vocabulary': samplers,
'type': 'choices',
'required': True
},
{
'id':
'SamplingDeviation',
'title':
_('Sampling Deviation'),
'allow_edit':
self.allow_edit and allow_sample_edit,
'value':
sample.getSamplingDeviation()
and sample.getSamplingDeviation().UID() or '',
'formatted_value':
sample.getSamplingDeviation()
and sample.getSamplingDeviation().Title() or '',
'condition':
True,
'vocabulary':
samplingdeviations,
'type':
'choices'
},
{
'id':
'DateReceived',
'title':
_('Date Received'),
'allow_edit':
False,
'value':
self.context.getDateReceived(),
'formatted_value':
self.ulocalized_time(self.context.getDateReceived()),
'condition':
True,
'type':
'text'
},
{
'id':
'DateExpired',
'title':
_('Date Expired'),
'allow_edit':
False,
'value':
self.context.getDateExpired(),
'formatted_value':
self.ulocalized_time(self.context.getDateExpired()),
'condition':
True,
'type':
'text'
},
{
'id':
'DisposalDate',
'title':
_('Disposal Date'),
'allow_edit':
False,
'value':
self.context.getDisposalDate(),
'formatted_value':
self.ulocalized_time(self.context.getDisposalDate()),
'condition':
True,
'type':
'text'
},
{
'id':
'DateDisposed',
'title':
_('Date Disposed'),
'allow_edit':
False,
'value':
self.context.getDateDisposed(),
'formatted_value':
self.ulocalized_time(self.context.getDateDisposed()),
'condition':
True,
'type':
'text'
},
]
if self.allow_edit:
self.header_buttons = [{'name': 'save_button', 'title': _('Save')}]
else:
self.header_buttons = []
## handle_header table submit
if form.get('header_submitted', None):
plone.protect.CheckAuthenticator(form)
message = None
values = {}
for row in [r for r in self.header_rows if r['allow_edit']]:
value = urllib.unquote_plus(form.get(row['id'], ''))
if row['id'] == 'SampleType':
if not value:
message = PMF(
u'error_required',
default=u'${name} is required, please correct.',
mapping={'name': _('Sample Type')})
break
if not bsc(portal_type='SampleType', title=value):
message = _("${sampletype} is not a valid sample type",
mapping={'sampletype': value})
break
if row['id'] == 'SamplePoint':
if value and \
not bsc(portal_type = 'SamplePoint', title = value):
message = _(
"${samplepoint} is not a valid sample point",
mapping={'sampletype': value})
break
values[row['id']] = value
# boolean - checkboxes are 'true'/'on' or 'false'/missing in form.
for row in [
r for r in self.header_rows
if r.get('type', '') == 'boolean'
]:
value = form.get(row['id'], 'false')
values[row[
'id']] = value == 'true' and True or value == 'on' and True or False
if not message:
self.context.edit(**values)
self.context.reindexObject()
ars = self.context.getAnalysisRequests()
# Analyses and AnalysisRequets have calculated fields
# that are indexed; re-index all these objects.
for ar in ars:
ar.reindexObject()
analyses = self.context.getAnalyses(
{'review_state': 'to_be_sampled'})
for a in analyses:
a.getObject().reindexObject()
message = PMF("Changes saved.")
# If this sample was "To Be Sampled", and the
# Sampler and DateSampled fields were completed,
# do the Sampled transition.
if workflow.getInfoFor(sample, "review_state") == "to_be_sampled" \
and form.get("Sampler", None) \
and form.get("DateSampled", None):
# This transition does not invoke the regular WorkflowAction
# in analysisrequest.py
workflow.doActionFor(sample, "sample")
sample.reindexObject()
self.context.plone_utils.addPortalMessage(message, 'info')
url = self.context.absolute_url().split("?")[0]
self.request.RESPONSE.redirect(url)
return
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [
{
'id': 'empty'
},
] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture=poc,
sort_on='getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
return self.template()
def _analysis_data(self, analysis):
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'unit': to_utf8(service.getUnit()),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
elif analysis.portal_type == 'DuplicateAnalysis':
specs = analysis.getAnalysisSpecs();
else:
ar = analysis.aq_parent
specs = ar.getPublicationSpecification()
if not specs or keyword not in specs.getResultsRangeDict():
specs = analysis.getAnalysisSpecs()
specs = specs.getResultsRangeDict().get(keyword, {}) \
if specs else {}
andict['specs'] = specs
andict['formatted_result'] = analysis.getFormattedResult(specs)
if specs.get('min', None) and specs.get('max', None):
andict['formatted_specs'] = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
andict['formatted_specs'] = '> %s' % specs['min']
elif specs.get('max', None):
andict['formatted_specs'] = '< %s' % specs['max']
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
laboratory = self.context.bika_setup.laboratory
BatchEmail = self.context.bika_setup.getBatchEmail()
BatchFax = self.context.bika_setup.getBatchFax()
# group analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or \
'fax' in self.pub_pref and BatchFax or 1
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryName()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
ar_results = self.ar_results()
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
#XXX
open(join(Globals.INSTANCE_HOME,'var','ar_results.html'),
"w").write(ar_results)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append("%s <<a href='mailto:%s'>%s</a>>"
% (cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [emails, ] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{'id': 'submit'},
{'id': 'retract'},
{'id': 'verify'}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from resultsinterpretation import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(), 'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.addMessage(message, 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') and \
ar.getChildAnalysisRequest() or None
message = _('These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') and \
ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _('This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def __call__(self):
form = self.request.form
bc = getToolByName(self.context, 'bika_catalog')
bsc = getToolByName(self.context, 'bika_setup_catalog')
checkPermission = self.context.portal_membership.checkPermission
getAuthenticatedMember = self.context.portal_membership.getAuthenticatedMember
workflow = getToolByName(self.context, 'portal_workflow')
ars = self.context.getAnalysisRequests()
props = getToolByName(self.context, 'portal_properties').bika_properties
datepicker_format = props.getProperty('datepicker_format')
sample = self.context
## Create header_table data rows
ar_links = ", ".join(
["<a href='%s'>%s</a>"%(ar.absolute_url(), ar.Title())
for ar in ars])
sp = self.context.getSamplePoint()
st = self.context.getSampleType()
if workflow.getInfoFor(self.context, 'cancellation_state') == "cancelled":
allow_sample_edit = False
else:
edit_states = ['to_be_sampled', 'to_be_preserved', 'sample_due']
allow_sample_edit = checkPermission(ManageSamples, self.context) \
and workflow.getInfoFor(self.context, 'review_state') in edit_states
SamplingWorkflowEnabled =\
self.context.bika_setup.getSamplingWorkflowEnabled()
samplers = getUsers(sample, ['Sampler', 'LabManager', 'Manager'])
self.header_columns = 3
self.header_rows = [
{'id': 'ClientReference',
'title': _('Client Reference'),
'allow_edit': self.allow_edit,
'value': self.context.getClientReference(),
'condition':True,
'type': 'text'},
{'id': 'ClientSampleID',
'title': _('Client SID'),
'allow_edit': self.allow_edit,
'value': self.context.getClientSampleID(),
'condition':True,
'type': 'text'},
{'id': 'Requests',
'title': _('Requests'),
'allow_edit': False,
'value': ar_links,
'condition':True,
'type': 'text'},
{'id': 'SampleType',
'title': _('Sample Type'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': st and st.Title() or '',
'condition':True,
'type': 'text',
'required': True},
{'id': 'SamplePoint',
'title': _('Sample Point'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': sp and sp.Title() or '',
'condition':True,
'type': 'text'},
{'id': 'Composite',
'title': _('Composite'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': self.context.getComposite(),
'condition':True,
'type': 'boolean'},
{'id': 'Creator',
'title': PMF('Creator'),
'allow_edit': False,
'value': pretty_user_name_or_id(self.context, self.context.Creator()),
'condition':True,
'type': 'text'},
{'id': 'DateCreated',
'title': PMF('Date Created'),
'allow_edit': False,
'value': self.context.created(),
'formatted_value': TimeOrDate(self.context, self.context.created()),
'condition':True,
'type': 'text'},
{'id': 'SamplingDate',
'title': _('Sampling Date'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': self.context.getSamplingDate().strftime(datepicker_format),
'formatted_value': TimeOrDate(self.context, self.context.getSamplingDate()),
'condition':True,
'class': 'datepicker',
'type': 'text'},
{'id': 'DateSampled',
'title': _('Date Sampled'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': sample.getDateSampled() and sample.getDateSampled().strftime(datepicker_format) or '',
'formatted_value': sample.getDateSampled() and TimeOrDate(self.context, sample.getDateSampled()) or '',
'condition':SamplingWorkflowEnabled,
'class': 'datepicker',
'type': 'text',
'required': True},
{'id': 'Sampler',
'title': _('Sampler'),
'allow_edit': self.allow_edit and allow_sample_edit,
'value': sample.getSampler(),
'formatted_value': sample.getSampler(),
'condition':SamplingWorkflowEnabled,
'vocabulary': samplers,
'type': 'choices',
'required': True},
{'id': 'DateReceived',
'title': _('Date Received'),
'allow_edit': False,
'value': self.context.getDateReceived(),
'formatted_value': TimeOrDate(self.context, self.context.getDateReceived()),
'condition':True,
'type': 'text'},
{'id': 'DateExpired',
'title': _('Date Expired'),
'allow_edit': False,
'value': self.context.getDateExpired(),
'formatted_value': TimeOrDate(self.context, self.context.getDateExpired()),
'condition':True,
'type': 'text'},
{'id': 'DisposalDate',
'title': _('Disposal Date'),
'allow_edit': False,
'value': self.context.getDisposalDate(),
'formatted_value': TimeOrDate(self.context, self.context.getDisposalDate()),
'condition':True,
'type': 'text'},
{'id': 'DateDisposed',
'title': _('Date Disposed'),
'allow_edit': False,
'value': self.context.getDateDisposed(),
'formatted_value': TimeOrDate(self.context, self.context.getDateDisposed()),
'condition':True,
'type': 'text'},
]
if self.allow_edit:
self.header_buttons = [{'name':'save_button', 'title':_('Save')}]
else:
self.header_buttons = []
## handle_header table submit
if form.get('header_submitted', None):
plone.protect.CheckAuthenticator(form)
message = None
values = {}
for row in [r for r in self.header_rows if r['allow_edit']]:
value = urllib.unquote_plus(form.get(row['id'], ''))
if row['id'] == 'SampleType':
if not value:
message = PMF(
u'error_required',
default=u'${name} is required, please correct.',
mapping={'name': _('Sample Type')})
break
if not bsc(portal_type = 'SampleType', title = value):
message = _("${sampletype} is not a valid sample type",
mapping={'sampletype':value})
break
if row['id'] == 'SamplePoint':
if value and \
not bsc(portal_type = 'SamplePoint', title = value):
message = _("${samplepoint} is not a valid sample point",
mapping={'sampletype':value})
break
values[row['id']] = value
# boolean - checkboxes are 'true' or 'false in form.
for row in [r for r in self.header_rows if r.get('type', '') == 'boolean']:
value = form.get(row['id'], 'false')
values[row['id']] = value == 'true' and True or False
if not message:
self.context.edit(**values)
self.context.reindexObject()
ars = self.context.getAnalysisRequests()
for ar in ars:
ar.reindexObject()
message = PMF("Changes saved.")
# If this sample was "To Be Sampled", and the
# Sampler and DateSampled fields were completed,
# do the Sampled transition.
if workflow.getInfoFor(sample, "review_state") == "to_be_sampled" \
and form.get("Sampler", None) \
and form.get("DateSampled", None):
workflow.doActionFor(sample, "sample")
sample.reindexObject()
self.context.plone_utils.addPortalMessage(message, 'info')
url = self.context.absolute_url().split("?")[0]
self.request.RESPONSE.redirect(url)
return
## Create Sample Partitions table
parts_table = None
if not self.allow_edit:
p = SamplePartitionsView(self.context, self.request)
p.allow_edit = self.allow_edit
p.show_select_column = self.allow_edit
p.show_workflow_action_buttons = self.allow_edit
p.show_column_toggles = False
p.show_select_all_checkbox = False
p.review_states[0]['transitions'] = [{'id': 'empty'},] # none
parts_table = p.contents_table()
self.parts = parts_table
## Create Field and Lab Analyses tables
self.tables = {}
if not self.allow_edit:
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture = poc,
sort_on = 'getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{'id':'submit'},
{'id':'retract'},
{'id':'verify'}]
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def _analysis_data(self, analysis):
""" Returns a dict that represents the analysis
"""
decimalmark = analysis.aq_parent.aq_parent.getDecimalMark()
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
else:
# Get the specs directly from the analysis. The getResultsRange
# function already takes care about which are the specs to be used:
# AR, client or lab.
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(
specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(
analysis,
analysis.getResult(),
decimalmark=decimalmark,
sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def _analysis_data(self, analysis):
""" Returns a dict that represents the analysis
"""
decimalmark = analysis.aq_parent.aq_parent.getDecimalMark()
keyword = analysis.getKeyword()
andict = {
'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': analysis.getScientificName(),
'accredited': analysis.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(analysis.getPointOfCapture())),
'category': to_utf8(analysis.getCategoryTitle()),
'result': analysis.getResult(),
'unit': to_utf8(analysis.getUnit()),
'formatted_unit': format_supsub(to_utf8(analysis.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() if hasattr(
analysis, 'getReferenceType') else None,
'worksheet': None,
'specs': {},
'formatted_specs': '',
'review_state': api.get_workflow_status_of(analysis),
}
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
# Which analysis specs must be used?
# Try first with those defined at AR Publish Specs level
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
else:
# Get the specs directly from the analysis. The getResultsRange
# function already takes care about which are the specs to be used:
# AR, client or lab.
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
andict['formatted_result'] = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
return andict
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, "portal_workflow")
BatchEmail = self.context.bika_setup.getBatchEmail()
username = self.context.portal_membership.getAuthenticatedMember().getUserName()
self.reporter = self.user_fullname(username)
self.reporter_email = self.user_email(username)
# signature image
self.reporter_signature = ""
c = [x for x in self.bika_setup_catalog(portal_type="LabContact") if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
self.reporter_signature = sf.absolute_url() + "/Signature"
# lab address
self.laboratory = laboratory = self.context.bika_setup.laboratory
self.lab_address = "<br/>".join(laboratory.getPrintAddress())
# group/publish analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = "email" in self.pub_pref and BatchEmail or 5
# client address
self.client = ars[0].aq_parent
self.client_address = "<br/>".join(self.client.getPrintAddress())
self.Footer = self.context.bika_setup.getResultFooter()
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b : b + batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
out_fn = "_".join([ar.Title() for ar in self.batch])
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True, review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
if service not in self.services[poc][cat]:
self.services[poc][cat].append(service)
if service.getAccredited():
self.any_accredited = True
# compose and send email
if "email" in self.pub_pref:
# render template
ar_results = self.ar_results()
ar_results = safe_unicode(ar_results).encode("utf-8")
ar_results = self.escape(ar_results)
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
open(join(Globals.INSTANCE_HOME, "var", out_fn + ".html"), "w").write(ar_results)
pisa.showLogging()
ramdisk = StringIO()
pdf = pisa.CreatePDF(ar_results, ramdisk)
pdf_data = ramdisk.getvalue()
ramdisk.close()
if debug_mode:
open(join(Globals.INSTANCE_HOME, "var", out_fn + ".pdf"), "wb").write(pdf_data)
mime_msg = MIMEMultipart("related")
mime_msg["Subject"] = self.get_mail_subject()
mime_msg["From"] = formataddr((encode_header(laboratory.getName()), laboratory.getEmailAddress()))
mime_msg["To"] = formataddr(
(encode_header(self.contact.getFullname()), self.contact.getEmailAddress())
)
mime_msg.preamble = "This is a multi-part MIME message."
msg_txt = MIMEText(ar_results, _subtype="html")
mime_msg.attach(msg_txt)
if not pdf.err:
part = MIMEBase("application", "application/pdf")
part.add_header("Content-Disposition", 'attachment; filename="%s.pdf"' % out_fn)
part.set_payload(pdf_data)
Encoders.encode_base64(part)
mime_msg.attach(part)
try:
host = getToolByName(self.context, "MailHost")
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected, msg:
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == "publish":
for ar in self.batch:
try:
workflow.doActionFor(ar, "publish")
except WorkflowException:
pass
## if not pdf.err:
## setheader = self.request.RESPONSE.setHeader
## setheader('Content-Type', 'application/pdf')
## setheader("Content-Disposition", "attachment;filename=\"%s.pdf\"" % out_fn)
## self.request.RESPONSE.write(pdf_data)
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def __call__(self):
form = self.request.form
bsc = getToolByName(self.context, 'bika_setup_catalog')
pc = getToolByName(self.context, 'portal_catalog')
checkPermission = self.context.portal_membership.checkPermission
getAuthenticatedMember = self.context.portal_membership.getAuthenticatedMember
workflow = getToolByName(self.context, 'portal_workflow')
ars = self.context.getAnalysisRequests()
props = getToolByName(self.context, 'portal_properties').bika_properties
datepicker_format = props.getProperty('datepicker_format')
## Create header_table data rows
ar_links = ", ".join(
["<a href='%s'>%s</a>"%(ar.absolute_url(), ar.Title())
for ar in ars])
sp = self.context.getSamplePoint()
st = self.context.getSampleType()
if workflow.getInfoFor(self.context, 'cancellation_state') == "cancelled":
allow_sample_edit = False
else:
edit_states = ['to_be_sampled', 'to_be_preserved', 'sample_due']
allow_sample_edit = checkPermission(ManageSamples, self.context) \
and workflow.getInfoFor(self.context, 'review_state') in edit_states
self.header_columns = 3
self.header_rows = [
{'id': 'ClientReference',
'title': _('Client Reference'),
'allow_edit': True,
'value': self.context.getClientReference(),
'condition':True,
'type': 'text'},
{'id': 'ClientSampleID',
'title': _('Client SID'),
'allow_edit': True,
'value': self.context.getClientSampleID(),
'condition':True,
'type': 'text'},
{'id': 'Requests',
'title': _('Requests'),
'allow_edit': False,
'value': ar_links,
'condition':True,
'type': 'text'},
{'id': 'SampleType',
'title': _('Sample Type'),
'allow_edit': allow_sample_edit,
'value': st and st.Title() or '',
'condition':True,
'type': 'text',
'required': True},
{'id': 'SamplePoint',
'title': _('Sample Point'),
'allow_edit': allow_sample_edit,
'value': sp and sp.Title() or '',
'condition':True,
'type': 'text'},
{'id': 'Composite',
'title': _('Composite'),
'allow_edit': allow_sample_edit,
'value': self.context.getComposite(),
'condition':True,
'type': 'boolean'},
{'id': 'Creator',
'title': PMF('Creator'),
'allow_edit': False,
'value': pretty_user_name_or_id(self.context, self.context.Creator()),
'condition':True,
'type': 'text'},
{'id': 'DateCreated',
'title': PMF('Date Created'),
'allow_edit': False,
'value': self.context.created(),
'formatted_value': TimeOrDate(self.context, self.context.created()),
'condition':True,
'type': 'text'},
{'id': 'SamplingDate',
'title': _('Sampling Date'),
'allow_edit': allow_sample_edit,
'value': self.context.getSamplingDate().strftime(datepicker_format),
'formatted_value': TimeOrDate(self.context, self.context.getSamplingDate()),
'condition':True,
'class': 'datepicker',
'type': 'text'},
{'id': 'DateReceived',
'title': _('Date Received'),
'allow_edit': False,
'value': self.context.getDateReceived(),
'formatted_value': TimeOrDate(self.context, self.context.getDateReceived()),
'condition':True,
'type': 'text'},
{'id': 'DateExpired',
'title': _('Date Expired'),
'allow_edit': False,
'value': self.context.getDateExpired(),
'formatted_value': TimeOrDate(self.context, self.context.getDateExpired()),
'condition':True,
'type': 'text'},
{'id': 'DisposalDate',
'title': _('Disposal Date'),
'allow_edit': False,
'value': self.context.getDisposalDate(),
'formatted_value': TimeOrDate(self.context, self.context.getDisposalDate()),
'condition':True,
'type': 'text'},
{'id': 'DateDisposed',
'title': _('Date Disposed'),
'allow_edit': False,
'value': self.context.getDateDisposed(),
'formatted_value': TimeOrDate(self.context, self.context.getDateDisposed()),
'condition':True,
'type': 'text'},
]
self.header_buttons = [{'name':'save_button', 'title':_('Save')}]
## handle_header table submit
if 'save_button' in form:
message = None
values = {}
for row in [r for r in self.header_rows if r['allow_edit']]:
value = form.get(row['id'], '')
if row['id'] == 'SampleType':
if not value:
message = _('Sample Type is required')
break
if not bsc(portal_type = 'SampleType', title = value):
message = _("${sampletype} is not a valid sample type",
mapping={'sampletype':value})
break
if row['id'] == 'SamplePoint':
if value and \
not bsc(portal_type = 'SamplePoint', title = value):
message = _("${samplepoint} is not a valid sample point",
mapping={'sampletype':value})
break
values[row['id']] = value
# boolean - checkboxes are present, or not present in form.
for row in [r for r in self.header_rows if r.get('type', '') == 'boolean']:
values[row['id']] = row['id'] in form
if not message:
self.context.edit(**values)
self.context.reindexObject()
ars = self.context.getAnalysisRequests()
for ar in ars:
ar.reindexObject()
message = PMF("Changes saved.")
self.context.plone_utils.addPortalMessage(message, 'info')
# we need to start the request again, to regenerate header
self.request.RESPONSE.redirect(self.context.absolute_url())
return
## Create Sample Partitions table
p = SamplePartitionsView(self.context, self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
## Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if not self.context.getAnalyses({'getPointOfCapture': poc}):
continue
t = SampleAnalysesView(self.context,
self.request,
getPointOfCapture = poc,
sort_on = 'getServiceTitle')
t.form_id = "sample_%s_analyses" % poc
t.allow_edit = True
if poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
t.show_column_toggles = False
t.review_states[0]['transitions'] = [{'id':'submit'},
{'id':'retract'},
{'id':'verify'}]
t.show_select_column = True
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
BatchEmail = self.context.bika_setup.getBatchEmail()
username = self.context.portal_membership.getAuthenticatedMember().getUserName()
self.reporter = self.user_fullname(username)
self.reporter_email = self.user_email(username)
# signature image
self.reporter_signature = ""
c = [x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
self.reporter_signature = sf.absolute_url() + "/Signature"
# lab address
self.laboratory = laboratory = self.context.bika_setup.laboratory
lab_address = laboratory.getPostalAddress() \
or laboratory.getBillingAddress() \
or laboratory.getPhysicalAddress()
if lab_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [lab_address.get(v) for v in _keys]
self.lab_address = "<br/>".join(_list).replace("\n", "<br/>")
else:
self.lab_address = None
# group/publish analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or 5
# client address
self.client = ars[0].aq_parent
client_address = self.client.getPostalAddress() \
or self.contact.getBillingAddress() \
or self.contact.getPhysicalAddress()
if client_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [client_address.get(v) for v in _keys]
self.client_address = "<br/>".join(_list).replace("\n", "<br/>")
else:
self.client_address = None
self.Footer = self.context.bika_setup.getResultFooter()
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
out_fn = "_".join([ar.Title() for ar in self.batch])
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
if service not in self.services[poc][cat]:
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
# render template
ar_results = self.ar_results()
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
open(join(Globals.INSTANCE_HOME,'var', out_fn + ".html"),
"w").write(ar_results)
pisa.showLogging()
ramdisk = StringIO()
pdf = pisa.CreatePDF(ar_results, ramdisk)
pdf_data = ramdisk.getvalue()
ramdisk.close()
if debug_mode:
open(join(Globals.INSTANCE_HOME,'var', out_fn + ".pdf"),
"wb").write(pdf_data)
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
if not pdf.err:
part = MIMEBase('application', "application/pdf")
part.add_header('Content-Disposition', 'attachment; filename="%s.pdf"' % out_fn)
part.set_payload( pdf_data )
Encoders.encode_base64(part)
mime_msg.attach(part)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected, msg:
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
## if not pdf.err:
## setheader = self.request.RESPONSE.setHeader
## setheader('Content-Type', 'application/pdf')
## setheader("Content-Disposition", "attachment;filename=\"%s.pdf\"" % out_fn)
## self.request.RESPONSE.write(pdf_data)
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def _analysis_data(self, analysis, decimalmark=None):
if analysis.UID() in self._cache['_analysis_data']:
return self._cache['_analysis_data'][analysis.UID()]
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'isnumber': isnumber(analysis.getResult()),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
else:
# Get the specs directly from the analysis. The getResultsRange
# function already takes care about which are the specs to be used:
# AR, client or lab.
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
fresult = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
# We don't use here cgi.encode because results fields must be rendered
# using the 'structure' wildcard. The reason is that the result can be
# expressed in sci notation, that may include <sup></sup> html tags.
# Please note the default value for the 'html' parameter from
# getFormattedResult signature is set to True, so the service will
# already take into account LDLs and UDLs symbols '<' and '>' and escape
# them if necessary.
andict['formatted_result'] = fresult;
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
self._cache['_analysis_data'][analysis.UID()] = andict
return andict
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# If the analysis request has been received and hasn't been yet
# verified yet, redirect the user to manage_results view, but only if
# the user has privileges to Edit(Field)Results, cause otherwise she/he
# will receive an InsufficientPrivileges error!
if (self.request.PATH_TRANSLATED.endswith(self.context.id)
and check_permission(EditResults, self.context)
and check_permission(EditFieldResults, self.context)
and wasTransitionPerformed(self.context, 'receive')
and not wasTransitionPerformed(self.context, 'verify')):
# Redirect to manage results view if not cancelled
if api.get_workflow_status_of(ar, 'cancellation_state') != \
"cancelled":
manage_results_url = "/".join(
[self.context.absolute_url(), 'manage_results'])
self.request.response.redirect(manage_results_url)
return
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append(
"%s <<a href='mailto:%s'>%s</a>>" %
(cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [
emails,
] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.
getCategoriseAnalysisServices(),
getRequestUID=self.context.UID())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.qctable = qcview.contents_table()
# Create the ResultsInterpretation by department view
from resultsinterpretation import ARResultsInterpretationView
self.riview = ARResultsInterpretationView(ar, self.request)
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
message = "General Retract Done. Submit this AR manually."
self.addMessage(message, 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _(
'These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getId()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _(
'This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getId()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def __call__(self):
ar = self.context
workflow = getToolByName(self.context, 'portal_workflow')
if 'transition' in self.request.form:
doActionFor(self.context, self.request.form['transition'])
# Contacts get expanded for view
contact = self.context.getContact()
contacts = []
for cc in self.context.getCCContact():
contacts.append(cc)
if contact in contacts:
contacts.remove(contact)
ccemails = []
for cc in contacts:
ccemails.append(
"%s <<a href='mailto:%s'>%s</a>>" %
(cc.Title(), cc.getEmailAddress(), cc.getEmailAddress()))
# CC Emails become mailto links
emails = self.context.getCCEmails()
if isinstance(emails, str):
emails = emails and [
emails,
] or []
cc_emails = []
cc_hrefs = []
for cc in emails:
cc_emails.append(cc)
cc_hrefs.append("<a href='mailto:%s'>%s</a>" % (cc, cc))
# render header table
self.header_table = HeaderTableView(self.context, self.request)()
# Create Partitions View for this ARs sample
p = SamplePartitionsView(self.context.getSample(), self.request)
p.show_column_toggles = False
self.parts = p.contents_table()
# Create Field and Lab Analyses tables
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = self.createAnalysesView(
ar,
self.request,
getPointOfCapture=poc,
show_categories=self.context.bika_setup.
getCategoriseAnalysisServices())
t.allow_edit = True
t.form_id = "%s_analyses" % poc
t.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
t.show_workflow_action_buttons = True
t.show_select_column = True
if getSecurityManager().checkPermission(EditFieldResults, self.context) \
and poc == 'field':
t.review_states[0]['columns'].remove('DueDate')
self.tables[POINTS_OF_CAPTURE.getValue(
poc)] = t.contents_table()
# Un-captured field analyses may cause confusion
if ar.getAnalyses(getPointOfCapture='field',
review_state=['sampled', 'sample_due']):
message = _("There are field analyses without submitted results.")
self.addMessage(message, 'info')
# Create QC Analyses View for this AR
show_cats = self.context.bika_setup.getCategoriseAnalysisServices()
qcview = self.createQCAnalyesView(ar,
self.request,
show_categories=show_cats)
qcview.allow_edit = False
qcview.show_select_column = False
qcview.show_workflow_action_buttons = False
qcview.form_id = "%s_qcanalyses"
qcview.review_states[0]['transitions'] = [{
'id': 'submit'
}, {
'id': 'retract'
}, {
'id': 'verify'
}]
self.qctable = qcview.contents_table()
# If a general retracted is done, rise a waring
if workflow.getInfoFor(ar, 'review_state') == 'sample_received':
allstatus = list()
for analysis in ar.getAnalyses():
status = workflow.getInfoFor(analysis.getObject(),
'review_state')
if status not in ['retracted', 'to_be_verified', 'verified']:
allstatus = []
break
else:
allstatus.append(status)
if len(allstatus) > 0:
self.addMessage("General Retract Done", 'warning')
# If is a retracted AR, show the link to child AR and show a warn msg
if workflow.getInfoFor(ar, 'review_state') == 'invalid':
childar = hasattr(ar, 'getChildAnalysisRequest') \
and ar.getChildAnalysisRequest() or None
message = _(
'These results have been withdrawn and are '
'listed here for trace-ability purposes. Please follow '
'the link to the retest')
if childar:
message = (message + " %s.") % childar.getRequestID()
else:
message = message + "."
self.addMessage(message, 'warning')
# If is an AR automatically generated due to a Retraction, show it's
# parent AR information
if hasattr(ar, 'getParentAnalysisRequest') \
and ar.getParentAnalysisRequest():
par = ar.getParentAnalysisRequest()
message = _(
'This Analysis Request has been '
'generated automatically due to '
'the retraction of the Analysis '
'Request ${retracted_request_id}.',
mapping={'retracted_request_id': par.getRequestID()})
self.addMessage(message, 'info')
self.renderMessages()
return self.template()
def _analysis_data(self, analysis, decimalmark=None):
if analysis.UID() in self._cache['_analysis_data']:
return self._cache['_analysis_data'][analysis.UID()]
keyword = analysis.getKeyword()
service = analysis.getService()
andict = {'obj': analysis,
'id': analysis.id,
'title': analysis.Title(),
'keyword': keyword,
'scientific_name': service.getScientificName(),
'accredited': service.getAccredited(),
'point_of_capture': to_utf8(POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())),
'category': to_utf8(service.getCategoryTitle()),
'result': analysis.getResult(),
'isnumber': isnumber(analysis.getResult()),
'unit': to_utf8(service.getUnit()),
'formatted_unit': format_supsub(to_utf8(service.getUnit())),
'capture_date': analysis.getResultCaptureDate(),
'request_id': analysis.aq_parent.getId(),
'formatted_result': '',
'uncertainty': analysis.getUncertainty(),
'formatted_uncertainty': '',
'retested': analysis.getRetested(),
'remarks': to_utf8(analysis.getRemarks()),
'resultdm': to_utf8(analysis.getResultDM()),
'outofrange': False,
'type': analysis.portal_type,
'reftype': analysis.getReferenceType() \
if hasattr(analysis, 'getReferenceType')
else None,
'worksheet': None,
'specs': {},
'formatted_specs': ''}
if analysis.portal_type == 'DuplicateAnalysis':
andict['reftype'] = 'd'
ws = analysis.getBackReferences('WorksheetAnalysis')
andict['worksheet'] = ws[0].id if ws and len(ws) > 0 else None
andict['worksheet_url'] = ws[0].absolute_url if ws and len(ws) > 0 else None
andict['refsample'] = analysis.getSample().id \
if analysis.portal_type == 'Analysis' \
else '%s - %s' % (analysis.aq_parent.id, analysis.aq_parent.Title())
if analysis.portal_type == 'ReferenceAnalysis':
# The analysis is a Control or Blank. We might use the
# reference results instead other specs
uid = analysis.getServiceUID()
specs = analysis.aq_parent.getResultsRangeDict().get(uid, {})
else:
# Get the specs directly from the analysis. The getResultsRange
# function already takes care about which are the specs to be used:
# AR, client or lab.
specs = analysis.getResultsRange()
andict['specs'] = specs
scinot = self.context.bika_setup.getScientificNotationReport()
fresult = analysis.getFormattedResult(specs=specs, sciformat=int(scinot), decimalmark=decimalmark)
# We don't use here cgi.encode because results fields must be rendered
# using the 'structure' wildcard. The reason is that the result can be
# expressed in sci notation, that may include <sup></sup> html tags.
# Please note the default value for the 'html' parameter from
# getFormattedResult signature is set to True, so the service will
# already take into account LDLs and UDLs symbols '<' and '>' and escape
# them if necessary.
andict['formatted_result'] = fresult;
fs = ''
if specs.get('min', None) and specs.get('max', None):
fs = '%s - %s' % (specs['min'], specs['max'])
elif specs.get('min', None):
fs = '> %s' % specs['min']
elif specs.get('max', None):
fs = '< %s' % specs['max']
andict['formatted_specs'] = formatDecimalMark(fs, decimalmark)
andict['formatted_uncertainty'] = format_uncertainty(analysis, analysis.getResult(), decimalmark=decimalmark, sciformat=int(scinot))
# Out of range?
if specs:
adapters = getAdapters((analysis, ), IResultOutOfRange)
bsc = getToolByName(self.context, "bika_setup_catalog")
for name, adapter in adapters:
ret = adapter(specification=specs)
if ret and ret['out_of_range']:
andict['outofrange'] = True
break
self._cache['_analysis_data'][analysis.UID()] = andict
return andict
