class TestJob(unittest.TestCase):
def setUp(self):
self.job_name = 'job_name'
self.job = Job(self.job_name)
def tearDown(self):
pass
def test__init__(self):
attributes = OrderedDict()
attributes['job_name'] = self.job_name
attributes['executable'] = None
attributes['arguments'] = None
expected = {
'_name': self.job_name,
'_attributes': attributes,
'_num_jobs': 1,
'_cluster_id': 0,
'_job_file': ''
}
actual = self.job.__dict__
msg = 'testing initialization with default values'
self.assertDictEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
exe = 'exe'
args = '-args'
num_jobs = '5'
self.job = Job(self.job_name, OrderedDict(), exe, args, num_jobs)
attributes['executable'] = exe
attributes['arguments'] = args
expected = {
'_name': self.job_name,
'_attributes': attributes,
'_num_jobs': int(num_jobs),
'_cluster_id': 0,
'_job_file': ''
}
actual = self.job.__dict__
msg = 'testing initialization with all values supplied'
self.assertDictEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
num_jobs = 'five'
self.assertRaises(ValueError, Job, self.job_name, num_jobs=num_jobs)
def test__str__(self):
expected = 'job_name = %s\n\nqueue 1\n' % (self.job_name)
actual = self.job.__str__()
msg = 'testing to string with default initialization'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__repr__(self):
expected = '<' \
'Job: name=%s, num_jobs=%d, cluster_id=%s>' % (self.job_name, 1, 0)
actual = self.job.__repr__()
msg = 'testing repr with default initialization'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__copy__(self):
original = self.job
copy = self.job.__copy__()
expected = original.name
actual = copy.name
msg = 'testing that name of copy is equal to original'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = original.attributes
actual = copy.attributes
msg = 'testing that attributes dictionary of copy is equal to original'
self.assertDictEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
msg = "testing that attributes is the same instance as the original's"
self.assertIs(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__deepcopy__(self):
original = self.job
memo = dict()
copy = self.job.__deepcopy__(memo)
expected = self.job.name
actual = copy.name
msg = 'testing that name of deepcopy is equal to original'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = original.attributes
actual = copy.attributes
msg = 'testing that attributes dictionary of copy is equal to original'
self.assertDictEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
msg = "testing that attributes is not the same instance as the original's"
self.assertIsNot(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__getattr__(self):
exe = 'exe'
self.job = Job(self.job_name, executable=exe)
expected = exe
actual = self.job.executable
msg = 'testing that existing value is returned'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
pass
def test__setattr__(self):
pass
def test_name(self):
expected = self.job_name
actual = self.job.name
msg = 'checking initialization of name'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
new_name = 'new_name'
self.job.name = new_name
expected = new_name
actual = self.job.name
msg = 'checking assignment of name'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_attributes(self):
pass
def test_num_jobs(self):
pass
def test_cluster_id(self):
pass
def test_job_file(self):
job_file_name = '%s.job' % (self.job_name)
job_file = os.path.join(os.getcwd(), job_file_name)
expected = job_file
actual = self.job.job_file
msg = 'checking resolving attribute function for job file'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
init_dir = 'init_dir'
self.job.initialdir = init_dir
job_file = os.path.join(init_dir, job_file_name)
self.assertEqual(job_file, self.job.job_file)
def test_log_file(self):
self.job = Job(self.job_name, Templates.base)
log_file = '%s/%s.%s.log' % (self.job.logdir, self.job_name,
self.job.cluster_id)
expected = log_file
actual = self.job.log_file
msg = 'checking resolving attribute function for log file'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_initial_dir(self):
pass
def test_submit(self):
pass
def test_remove(self):
pass
def test_edit(self):
expected = NotImplementedError
actual = self.job.edit
self.assertRaises(expected, actual)
def test_status(self):
expected = NotImplementedError
actual = self.job.edit
self.assertRaises(expected, actual)
def test_wait(self):
self.job.wait()
def test_get(self):
non_existent_attr = 'not-there'
expected = None
actual = self.job.get(non_existent_attr)
msg = 'testing that None is returned when attribute does not exist'
self.assertIsNone(
actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = 'expected'
actual = self.job.get(non_existent_attr, expected)
msg = 'testing that supplied value is returned when attribute does not exist'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
exe = 'exe'
self.job = Job(self.job_name, executable=exe)
expected = exe
actual = self.job.get('executable')
msg = 'testing that existing value is returned'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_set(self):
key = 'was-not-there'
value = 'now-it-is'
self.job.set(key, value)
expected = value
actual = self.job.attributes[key]
msg = 'testing that attribute that previously does not exist is set correctly'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
key = 'was-already-there'
value = 'used-to-be-this'
new_value = 'now-it-is-this'
self.job.set(key, value)
self.job.set(key, new_value)
expected = new_value
actual = self.job.attributes[key]
msg = 'testing that attribute that previously existed is re-set correctly'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_delete(self):
key = 'was-not-there'
value = 'now-it-is'
self.job.set(key, value)
self.job.delete(key)
member = key
container = self.job.attributes
msg = 'testing that attribute is removed when deleted'
self.assertNotIn(member, container, msg)
def test_write_job_file(self):
pass
def test_list_attributes(self):
pass
def test_make_dir(self):
pass
def test_make_job_dirs(self):
pass
def test_resolve_attribute(self):
job = Job(self.job_name, Templates.vanilla_base)
expected = self.job_name
actual = job._resolve_attribute('initialdir')
msg = 'checking resolving attribute function'
self.assertEqual(
expected, actual,
'%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_resolve_attribute_match(self):
pass
class TestJob(unittest.TestCase):
expected = None
actual = None
msg = None
base_dir = os.path.join(os.path.dirname(__file__))
@property
def output(self):
return '%s\nExpected: %s\nActual: %s\n' % (self.msg, self.expected, self.actual)
@property
def assert_args(self):
return (self.expected, self.actual, self.output)
def setUp(self):
self.job_name = 'job_name'
self.job = Job(self.job_name)
def tearDown(self):
pass
def test__init__(self):
attributes = dict()
attributes['job_name'] = self.job_name
self.expected = {'_name': self.job_name,
'_attributes': attributes,
'_num_jobs': 1,
'_cluster_id': 0,
'_job_file': '',
'_remote': None,
'_remote_id': None,
'_remote_input_files': None,
'_cwd': '.'}
self.actual = self.job.__dict__
self.msg = 'testing initialization with default values'
self.assertDictEqual(*self.assert_args)
exe = 'exe'
args = 'args'
num_jobs = '5'
self.job = Job(self.job_name, OrderedDict(), num_jobs, executable=exe, arguments=args)
attributes.update({'executable': exe, 'arguments': args})
self.expected.update({'_name': self.job_name,
'_attributes': attributes,
'_num_jobs': int(num_jobs)})
self.actual = self.job.__dict__
self.actual['_attributes'] = dict(self.actual['_attributes'])
self.msg = 'testing initialization with all values supplied'
self.assertDictEqual(*self.assert_args)
num_jobs = 'five'
self.assertRaises(ValueError, Job, self.job_name, num_jobs=num_jobs)
def test__str__(self):
expected = 'job_name = %s\n\nqueue 1\n' % (self.job_name)
actual = self.job.__str__()
msg = 'testing to string with default initialization'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__repr__(self):
expected = '<' \
'Job: name=%s, num_jobs=%d, cluster_id=%s>' % (self.job_name, 1, 0)
actual = self.job.__repr__()
msg = 'testing repr with default initialization'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__copy__(self):
original = self.job
copy = self.job.__copy__()
expected = original.name
actual = copy.name
msg = 'testing that name of copy is equal to original'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = original.attributes
actual = copy.attributes
msg = 'testing that attributes dictionary of copy is equal to original'
self.assertDictEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
msg = "testing that attributes is the same instance as the original's"
self.assertIs(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__deepcopy__(self):
original = self.job
memo = dict()
copy = self.job.__deepcopy__(memo)
expected = self.job.name
actual = copy.name
msg = 'testing that name of deepcopy is equal to original'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = original.attributes
actual = copy.attributes
msg = 'testing that attributes dictionary of copy is equal to original'
self.assertDictEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
msg = "testing that attributes is not the same instance as the original's"
self.assertIsNot(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test__getattr__(self):
exe = 'exe'
self.job = Job(self.job_name, executable=exe)
expected = exe
actual = self.job.executable
msg = 'testing that existing value is returned'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
pass
def test__setattr__(self):
pass
def test_name(self):
expected = self.job_name
actual = self.job.name
msg = 'checking initialization of name'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
new_name = 'new_name'
self.job.name = new_name
expected = new_name
actual = self.job.name
msg = 'checking assignment of name'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_attributes(self):
pass
def test_num_jobs(self):
pass
def test_cluster_id(self):
pass
def test_job_file(self):
job_file_name = '%s.job' % (self.job_name)
job_file = os.path.join(os.path.relpath(os.getcwd()), job_file_name)
expected = job_file
actual = self.job.job_file
msg = 'checking resolving attribute function for job file'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
init_dir = 'init_dir'
self.job.initialdir = init_dir
job_file = os.path.join(init_dir, job_file_name)
self.assertEqual(job_file, self.job.job_file)
def test_log_file(self):
self.job = Job(self.job_name, Templates.base)
log_file = '%s/%s/%s.%s.log' % (self.job.initial_dir, self.job.logdir, self.job_name, self.job.cluster_id)
expected = log_file
actual = self.job.log_file
msg = 'checking resolving attribute function for log file'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_initial_dir(self):
pass
def test_submit(self):
pass
def test_remove(self):
pass
def test_edit(self):
expected = NotImplementedError
actual = self.job.edit
self.assertRaises(expected, actual)
def test_status(self):
expected = NotImplementedError
actual = self.job.edit
self.assertRaises(expected, actual)
def test_wait(self):
pass
def test_get(self):
non_existent_attr = 'not-there'
expected = None
actual = self.job.get(non_existent_attr)
msg = 'testing that None is returned when attribute does not exist'
self.assertIsNone(actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
expected = 'expected'
actual = self.job.get(non_existent_attr, expected)
msg = 'testing that supplied value is returned when attribute does not exist'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
exe = 'exe'
self.job = Job(self.job_name, executable=exe)
expected = exe
actual = self.job.get('executable')
msg = 'testing that existing value is returned'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_set(self):
key = 'was-not-there'
value = 'now-it-is'
self.job.set(key, value)
expected = value
actual = self.job.attributes[key]
msg = 'testing that attribute that previously does not exist is set correctly'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
key = 'was-already-there'
value = 'used-to-be-this'
new_value = 'now-it-is-this'
self.job.set(key, value)
self.job.set(key,new_value)
expected = new_value
actual = self.job.attributes[key]
msg = 'testing that attribute that previously existed is re-set correctly'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
key = 'python boolean'
value = True
self.job.set(key, value)
expected = 'true'
actual = self.job.attributes[key]
msg = 'testing that an attribute can be set with the Python boolean value "True"'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
key = 'python boolean'
value = False
self.job.set(key, value)
expected = 'false'
actual = self.job.attributes[key]
msg = 'testing that an attribute can be set with the Python boolean value "False"'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
key = 'python list'
value = ['file.txt', 1]
self.job.set(key, value)
expected = ', '.join([str(i) for i in value])
actual = self.job.attributes[key]
msg = 'testing that an attribute can be set with a Python list'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_delete(self):
key = 'was-not-there'
value = 'now-it-is'
self.job.set(key, value)
self.job.delete(key)
member = key
container = self.job.attributes
msg = 'testing that attribute is removed when deleted'
self.assertNotIn(member, container, msg)
def test_write_job_file(self):
pass
def test_list_attributes(self):
pass
def test_make_dir(self):
pass
def test_make_job_dirs(self):
pass
def test_resolve_attribute(self):
job = Job(self.job_name, Templates.vanilla_base)
expected = self.job_name
actual = job._resolve_attribute('initialdir')
msg = 'checking resolving attribute function'
self.assertEqual(expected, actual, '%s\nExpected: %s\nActual: %s\n' % (msg, expected, actual))
def test_resolve_attribute_match(self):
pass
def test_remote(self):
working_dir = os.path.join(self.base_dir, 'test_files', 'working_dir')
self.job = Job('remote_test',
Templates.vanilla_transfer_files,
host='localhost',
username=os.environ['USER'],
private_key='~/.ssh/id_rsa',
remote_input_files=['../copy_test.py', 'input.txt'],
transfer_input_files='../input.txt',
working_directory=working_dir)
remote_base_path = os.path.expanduser('~/' + self.job._remote_id)
if os.path.exists(remote_base_path):
raise
self.job._write_job_file()
self.assertTrue(os.path.exists(remote_base_path))
self.job.sync_remote_output()
local_output = os.path.join(working_dir, self.job.name)
self.assertTrue(os.path.exists(local_output))
shutil.rmtree(remote_base_path)
shutil.rmtree(local_output)
