def test_has_labels_case_sensitivity(self):
tns = TaxonNamespace(self.str_labels)
labels_upper = [label.upper() for label in self.str_labels if label.upper() != label]
assert labels_upper
tns.is_case_sensitive = True
self.assertFalse(tns.has_taxa_labels(labels_upper))
tns.is_case_sensitive = False
self.assertTrue(tns.has_taxa_labels(labels_upper))
def test_case_insensitive_require_taxon_by_label2(self):
tns = TaxonNamespace(self.str_labels)
labels_upper = [label.upper() for label in self.str_labels if label.upper() != label]
labels_upper = list(set(labels_upper))
assert labels_upper
for label in labels_upper:
tns.is_case_sensitive = True
t = tns.require_taxon(label)
self.assertEqual(t.label, label)
self.validate_taxon_concepts(tns, self.str_labels + labels_upper)
def test_case_insensitive_require_taxon_by_label1(self):
tns = TaxonNamespace(self.str_labels)
labels_upper = [label.upper() for label in self.str_labels if label.upper() != label]
assert labels_upper
for label in labels_upper:
tns.is_case_sensitive = False
t = tns.require_taxon(label)
self.assertEqual(t.label.lower(), label.lower())
self.assertEqual(len(tns), len(self.str_labels))
self.validate_taxon_concepts(tns, self.str_labels)
def test_findall_multiple(self):
tns = TaxonNamespace(self.str_labels)
multilabels= ["_", "z"]
for label in multilabels:
tns.is_case_sensitive=True
taxa = tns.findall(label=label)
self.assertTrue(isinstance(taxa, collections.Iterable))
self.assertEqual(len(taxa), len([s for s in self.str_labels if s == label]))
for t in taxa:
self.assertEqual(t.label, label)
def test_remove_taxon_label_case_insensitive(self):
ucase_labels = [s.upper() for s in self.str_labels]
assert ucase_labels
assert ucase_labels != self.str_labels
taxa = [Taxon(s) for s in self.str_labels]
tns = TaxonNamespace(taxa)
expected = taxa[:]
for idx, label in enumerate(set(ucase_labels)):
if label != label.lower():
with self.assertRaises(LookupError):
tns.is_case_sensitive = True
tns.remove_taxon_label(label)
tns.is_case_sensitive = False
tns.remove_taxon_label(label)
for t in taxa:
if t.label.upper() == label.upper() and t in expected:
expected.remove(t)
self.assertEqual(len(tns), len(expected))
for t1, t2 in zip(tns, expected):
self.assertIs(t1, t2)
def test_case_insensitive_get_taxa_by_label(self):
tns = TaxonNamespace(self.str_labels)
labels_upper = [label.upper() for label in self.str_labels if label.upper() != label]
assert labels_upper
# default: case-insensitive
t2 = tns.get_taxa(labels_upper)
self.assertEqual(len(t2), len(labels_upper))
for t, label in zip(t2, labels_upper):
self.assertEqual(t.label.lower(), label.lower())
# test: case sensitive
tns.is_case_sensitive = True
t1 = tns.get_taxa(labels_upper)
self.assertEqual(len(t1), 0)
def test_case_insensitive_get_taxon_by_label(self):
tns = TaxonNamespace(self.str_labels)
labels_upper = [label.upper() for label in self.str_labels if label.upper() != label]
assert labels_upper
# default: case insensitive
for label in labels_upper:
t = tns.get_taxon(label)
self.assertIsNot(t, None)
self.assertEqual(t.label.lower(), label.lower())
# test: case sensitive
tns.is_case_sensitive = True
for label in labels_upper:
t = tns.get_taxon(label)
self.assertIs(t, None)
def test_discard_taxon_label_case_sensitive(self):
ucase_labels = [s.upper() for s in self.str_labels]
assert ucase_labels
assert ucase_labels != self.str_labels
taxa = [Taxon(s) for s in self.str_labels]
tns = TaxonNamespace(taxa)
expected = taxa[:]
# test: case sensitive
tns.is_case_sensitive = True
for idx, label in enumerate(set(ucase_labels)):
if label != label.lower():
x1 = len(tns)
try:
tns.discard_taxon_label(label)
except LookupError:
self.fail()
else:
self.assertEqual(len(tns), x1)
def test_findall_not_found(self):
tns = TaxonNamespace(self.str_labels)
tns.is_case_sensitive=True
taxa = tns.findall(label="x")
self.assertEqual(taxa, [])
