def doit(fN):
geneSet = cgGenes3.createGeneSetEditing(fN)
for transcript in geneSet.transcripts:
if transcript.id == 'NM_031422':
dumpObj.dumpObj(transcript)
def slot_save(self):
dumpObj(self.current_dataset)
#for poly in self.draw_widget.get_polygons():
# dumpObj(poly)
#self.slot_update_polygons(self.draw_widget.get_polygons(), 1)
self.scans_database.save()
import cgOriginRNA
import cgDB
import dumpObj
oRNA_DC = cgDB.dataController('oRNA', cgOriginRNA.OriginRNA)
id_oRNA = oRNA_DC.load()
id_oRNA[10].name = 'I changed you'
id_oRNA[201].name = 'Another Name'
id_oRNA[10].name = 'Changed Again'
id_oRNA[200].targets = [47, 35, 10000]
dumpObj.dumpObj(id_oRNA[2000])
oRNA_DC.commit(id_oRNA)
def testLoad(aDir):
aDC = cgDB.dataController(aDir, cgAlignment.cgAlignment)
id_alignment = aDC.load()
dumpObj.dumpObj(id_alignment[2])
def doit(fN):
geneSet = cgGenes3.createGeneSetEditing(fN)
for transcript in geneSet.transcripts:
if transcript.id == 'NM_031422':
dumpObj.dumpObj(transcript)
def slot_save(self):
dumpObj(self.current_dataset)
#for poly in self.draw_widget.get_polygons():
# dumpObj(poly)
#self.slot_update_polygons(self.draw_widget.get_polygons(), 1)
self.scans_database.save()