def configure_step(self): """Configure build: - set required environment variables (for netCDF, JasPer) - patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer - run configure script and figure how to select desired build option - patch configure.wps file afterwards to fix 'serial compiler' setting """ # netCDF dependency check + setting env vars (NETCDF, NETCDFF) set_netcdf_env_vars(self.log) self.netcdf_mod_cmds = get_netcdf_module_set_cmds(self.log) # WRF dependency check wrf = get_software_root('WRF') if wrf: majver = get_software_version('WRF').split('.')[0] self.wrfdir = os.path.join(wrf, "WRFV%s" % majver) else: self.log.error("WRF module not loaded?") # patch compile script so that WRF is found self.compile_script = "compile" try: for line in fileinput.input(self.compile_script, inplace=1, backup='.orig.wrf'): line = re.sub(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % self.wrfdir, line) sys.stdout.write(line) except IOError, err: self.log.error("Failed to patch %s script: %s" % (self.compile_script, err))
def configure_step(self): """Configure build: - set some magic environment variables - run configure script - adjust configure.wrf file if needed """ wrfdir = os.path.join(self.builddir, self.wrfsubdir) # define $NETCDF* for netCDF dependency (used when creating WRF module file) set_netcdf_env_vars(self.log) # HDF5 (optional) dependency hdf5 = get_software_root('HDF5') if hdf5: env.setvar('HDF5', hdf5) # check if this is parallel HDF5 phdf5_bins = ['h5pcc', 'ph5diff'] parallel_hdf5 = True for f in phdf5_bins: if not os.path.exists(os.path.join(hdf5, 'bin', f)): parallel_hdf5 = False break if parallel_hdf5: env.setvar('PHDF5', hdf5) else: self.log.info( "Parallel HDF5 module not loaded, assuming that's OK...") else: self.log.info("HDF5 module not loaded, assuming that's OK...") # Parallel netCDF (optional) dependency pnetcdf = get_software_root('PnetCDF') if pnetcdf: env.setvar('PNETCDF', pnetcdf) # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERINC', os.path.join(jasper, "include")) env.setvar('JASPERLIB', jasperlibdir) else: if os.getenv('JASPERINC') or os.getenv('JASPERLIB'): raise EasyBuildError( "JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?" ) else: self.log.info( "JasPer module not loaded, assuming that's OK...") # enable support for large file support in netCDF env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1') # patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions if LooseVersion(self.version) < LooseVersion('4.0'): patch_perl_script_autoflush( os.path.join(wrfdir, "arch", "Config_new.pl")) # determine build type option to look for build_type_option = None self.comp_fam = self.toolchain.comp_family() if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "INTEL\ \(ifort\/icc\)" else: build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc" elif self.comp_fam == toolchain.GCC: # @UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "GNU\ \(gfortran\/gcc\)" else: build_type_option = "x86_64 Linux, gfortran compiler with gcc" else: raise EasyBuildError( "Don't know how to figure out build type to select.") # fetch selected build type (and make sure it makes sense) known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm'] self.parallel_build_types = ["dmpar", "dm+sm"] bt = self.cfg['buildtype'] if bt not in known_build_types: raise EasyBuildError( "Unknown build type: '%s'. Supported build types: %s", bt, known_build_types) # Escape the "+" in "dm+sm" since it's being used in a regexp below. bt = bt.replace('+', r'\+') # fetch option number based on build type option and selected build type if LooseVersion(self.version) >= LooseVersion('3.7'): # the two relevant lines in the configure output for WRF 3.8 are: # 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc) # 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc) build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % ( bt, build_type_option) else: # the relevant lines in the configure output for WRF 3.6 are: # 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial) # 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar) # 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar) # 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm) # 32. x86_64 Linux, gfortran compiler with gcc (serial) # 33. x86_64 Linux, gfortran compiler with gcc (smpar) # 34. x86_64 Linux, gfortran compiler with gcc (dmpar) # 35. x86_64 Linux, gfortran compiler with gcc (dm+sm) build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % ( build_type_option, bt) # run configure script cmd = "./configure" qa = { # named group in match will be used to construct answer "Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1", "Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0" } no_qa = [ "testing for fseeko and fseeko64", r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults" ] std_qa = { # named group in match will be used to construct answer r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s", } run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True) cfgfile = 'configure.wrf' # make sure correct compilers are being used comps = { 'SCC': os.getenv('CC'), 'SFC': os.getenv('F90'), 'CCOMP': os.getenv('CC'), 'DM_FC': os.getenv('MPIF90'), 'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'), } regex_subs = [(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v) for (k, v) in comps.items()] apply_regex_substitutions(cfgfile, regex_subs) # rewrite optimization options if desired if self.cfg['rewriteopts']: # replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment self.log.info("Rewriting optimization options in %s" % cfgfile) # set extra flags for Intel compilers # see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748 if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable # -O3 -heap-arrays is required to resolve compilation error for envvar in ['CFLAGS', 'FFLAGS']: val = os.getenv(envvar) if '-O3' in val: env.setvar(envvar, '%s -heap-arrays' % val) self.log.info("Updated %s to '%s'" % (envvar, os.getenv(envvar))) # replace -O3 with desired optimization options regex_subs = [ (r"^(FCOPTIM.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('FFLAGS')), (r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('CFLAGS')), ] apply_regex_substitutions(cfgfile, regex_subs)
def configure_step(self): """Configure build: - set some magic environment variables - run configure script - adjust configure.wrf file if needed """ # define $NETCDF* for netCDF dependency (used when creating WRF module file) set_netcdf_env_vars(self.log) # HDF5 (optional) dependency hdf5 = get_software_root('HDF5') if hdf5: # check if this is parallel HDF5 phdf5_bins = ['h5pcc', 'ph5diff'] parallel_hdf5 = True for f in phdf5_bins: if not os.path.exists(os.path.join(hdf5, 'bin', f)): parallel_hdf5 = False break if not (hdf5 or parallel_hdf5): raise EasyBuildError("Parallel HDF5 module not loaded?") else: env.setvar('PHDF5', hdf5) else: self.log.info("HDF5 module not loaded, assuming that's OK...") # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERINC', os.path.join(jasper, "include")) env.setvar('JASPERLIB', jasperlibdir) else: if os.getenv('JASPERINC') or os.getenv('JASPERLIB'): raise EasyBuildError("JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?") else: self.log.info("JasPer module not loaded, assuming that's OK...") # enable support for large file support in netCDF env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1') # patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl")) # determine build type option to look for build_type_option = None self.comp_fam = self.toolchain.comp_family() if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "INTEL\ \(ifort\/icc\)" else: build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc" elif self.comp_fam == toolchain.GCC: #@UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "GNU\ \(gfortran\/gcc\)" else: build_type_option = "x86_64 Linux, gfortran compiler with gcc" else: raise EasyBuildError("Don't know how to figure out build type to select.") # fetch selected build type (and make sure it makes sense) known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm'] self.parallel_build_types = ["dmpar", "smpar", "dm+sm"] bt = self.cfg['buildtype'] if not bt in known_build_types: raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, known_build_types) # fetch option number based on build type option and selected build type if LooseVersion(self.version) >= LooseVersion('3.7'): # the two relevant lines in the configure output for WRF 3.8 are: # 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc) # 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc) build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % (bt, build_type_option) else: # the relevant lines in the configure output for WRF 3.6 are: # 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial) # 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar) # 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar) # 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm) # 32. x86_64 Linux, gfortran compiler with gcc (serial) # 33. x86_64 Linux, gfortran compiler with gcc (smpar) # 34. x86_64 Linux, gfortran compiler with gcc (dmpar) # 35. x86_64 Linux, gfortran compiler with gcc (dm+sm) build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (build_type_option, bt) # run configure script cmd = "./configure" qa = { # named group in match will be used to construct answer "Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1", "Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0" } no_qa = [ "testing for fseeko and fseeko64", r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults" ] std_qa = { # named group in match will be used to construct answer r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s", } run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True) cfgfile = 'configure.wrf' # make sure correct compilers are being used comps = { 'SCC': os.getenv('CC'), 'SFC': os.getenv('F90'), 'CCOMP': os.getenv('CC'), 'DM_FC': os.getenv('MPIF90'), 'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'), } regex_subs = [(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v) for (k, v) in comps.items()] apply_regex_substitutions(cfgfile, regex_subs) # rewrite optimization options if desired if self.cfg['rewriteopts']: # replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment self.log.info("Rewriting optimization options in %s" % cfgfile) # set extra flags for Intel compilers # see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748 if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable # -O3 -heap-arrays is required to resolve compilation error for envvar in ['CFLAGS', 'FFLAGS']: val = os.getenv(envvar) if '-O3' in val: env.setvar(envvar, '%s -heap-arrays' % val) self.log.info("Updated %s to '%s'" % (envvar, os.getenv(envvar))) # replace -O3 with desired optimization options regex_subs = [ (r"^(FCOPTIM.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('FFLAGS')), (r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('CFLAGS')), ] apply_regex_substitutions(cfgfile, regex_subs)
def configure_step(self): """Configure build: - set some magic environment variables - run configure script - adjust configure.wrf file if needed """ # netCDF dependency set_netcdf_env_vars(self.log) self.netcdf_mod_cmds = get_netcdf_module_set_cmds(self.log) # HDF5 (optional) dependency hdf5 = get_software_root('HDF5') if hdf5: # check if this is parallel HDF5 phdf5_bins = ['h5pcc', 'ph5diff'] parallel_hdf5 = True for f in phdf5_bins: if not os.path.exists(os.path.join(hdf5, 'bin', f)): parallel_hdf5 = False break if not (hdf5 or parallel_hdf5): self.log.error("Parallel HDF5 module not loaded?") else: env.setvar('PHDF5', hdf5) else: self.log.info("HDF5 module not loaded, assuming that's OK...") # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERINC', os.path.join(jasper, "include")) env.setvar('JASPERLIB', jasperlibdir) else: if os.getenv('JASPERINC') or os.getenv('JASPERLIB'): self.log.error( "JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?" ) else: self.log.info( "JasPer module not loaded, assuming that's OK...") # enable support for large file support in netCDF env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1') # patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl")) # determine build type option to look for build_type_option = None self.comp_fam = self.toolchain.comp_family() if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc" elif self.comp_fam == toolchain.GCC: #@UndefinedVariable build_type_option = "x86_64 Linux, gfortran compiler with gcc" else: self.log.error( "Don't know how to figure out build type to select.") # fetch selected build type (and make sure it makes sense) known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm'] self.parallel_build_types = ["dmpar", "smpar", "dm+sm"] bt = self.cfg['buildtype'] if not bt in known_build_types: self.log.error( "Unknown build type: '%s'. Supported build types: %s" % (bt, known_build_types)) # fetch option number based on build type option and selected build type build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % ( build_type_option, bt) # run configure script cmd = "./configure" qa = { # named group in match will be used to construct answer "Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1", "Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0" } no_qa = [ "testing for fseeko and fseeko64", r"If you wish to change the default options, edit the file:[\s\n]*arch/configure_new.defaults" ] std_qa = { # named group in match will be used to construct answer r"%s.*\n(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s", } run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True) cfgfile = 'configure.wrf' # make sure correct compilers are being used comps = { 'SCC': os.getenv('CC'), 'SFC': os.getenv('F90'), 'CCOMP': os.getenv('CC'), 'DM_FC': os.getenv('MPIF90'), 'DM_CC': "%s -DMPI2_SUPPORT" % os.getenv('MPICC'), } for line in fileinput.input(cfgfile, inplace=1, backup='.orig.comps'): for (k, v) in comps.items(): line = re.sub(r"^(%s\s*=\s*).*$" % k, r"\1 %s" % v, line) sys.stdout.write(line) # rewrite optimization options if desired if self.cfg['rewriteopts']: # replace default -O3 option in configure.wrf with CFLAGS/FFLAGS from environment self.log.info("Rewriting optimization options in %s" % cfgfile) # set extra flags for Intel compilers # see http://software.intel.com/en-us/forums/showthread.php?t=72109&p=1#146748 if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable # -O3 -heap-arrays is required to resolve compilation error for envvar in ['CFLAGS', 'FFLAGS']: val = os.getenv(envvar) if '-O3' in val: env.setvar(envvar, '%s -heap-arrays' % val) self.log.info("Updated %s to '%s'" % (envvar, os.getenv(envvar))) # replace -O3 with desired optimization options for line in fileinput.input(cfgfile, inplace=1, backup='.orig.rewriteopts'): line = re.sub(r"^(FCOPTIM.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('FFLAGS'), line) line = re.sub(r"^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$", r"\1 %s \3" % os.getenv('CFLAGS'), line) sys.stdout.write(line)
def configure_step(self): """Configure build: - set required environment variables (for netCDF, JasPer) - patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer - run configure script and figure how to select desired build option - patch configure.wps file afterwards to fix 'serial compiler' setting """ # netCDF dependency check + setting env vars (NETCDF, NETCDFF) set_netcdf_env_vars(self.log) # WRF dependency check wrf = get_software_root('WRF') if wrf: wrfdir = os.path.join(wrf, det_wrf_subdir(get_software_version('WRF'))) else: raise EasyBuildError("WRF module not loaded?") self.compile_script = 'compile' if LooseVersion(self.version) >= LooseVersion('4.0.3'): # specify install location of WRF via $WRF_DIR (supported since WPS 4.0.3) # see https://github.com/wrf-model/WPS/pull/102 env.setvar('WRF_DIR', wrfdir) else: # patch compile script so that WRF is found regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % wrfdir)] apply_regex_substitutions(self.compile_script, regex_subs) # libpng dependency check libpng = get_software_root('libpng') zlib = get_software_root('zlib') if libpng: paths = [libpng] if zlib: paths.insert(0, zlib) libpnginc = ' '.join( ['-I%s' % os.path.join(path, 'include') for path in paths]) libpnglib = ' '.join( ['-L%s' % os.path.join(path, 'lib') for path in paths]) else: # define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng) libpnglib = "" libpnginc = "" # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: env.setvar('JASPERINC', os.path.join(jasper, "include")) jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERLIB', jasperlibdir) jasperlib = "-L%s" % jasperlibdir else: raise EasyBuildError("JasPer module not loaded?") # patch ungrib Makefile so that JasPer is found jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib) regex_subs = [ (r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$", r"\1 %s\2" % jasperlibs), (r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$", r"\1 %s\2" % jasperlibs), ] apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'), regex_subs) # patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions patch_perl_script_autoflush(os.path.join("arch", "Config.pl")) # configure # determine build type option to look for self.comp_fam = self.toolchain.comp_family() build_type_option = None if LooseVersion(self.version) >= LooseVersion("3.4"): knownbuildtypes = {'smpar': 'serial', 'dmpar': 'dmpar'} if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable build_type_option = " Linux x86_64, Intel compiler" elif self.comp_fam == toolchain.GCC: # @UndefinedVariable if LooseVersion(self.version) >= LooseVersion("3.6"): build_type_option = "Linux x86_64, gfortran" else: build_type_option = "Linux x86_64 g95" else: raise EasyBuildError( "Don't know how to figure out build type to select.") else: knownbuildtypes = {'smpar': 'serial', 'dmpar': 'DM parallel'} if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable build_type_option = "PC Linux x86_64, Intel compiler" elif self.comp_fam == toolchain.GCC: # @UndefinedVariable build_type_option = "PC Linux x86_64, gfortran compiler," knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper() else: raise EasyBuildError( "Don't know how to figure out build type to select.") # check and fetch selected build type bt = self.cfg['buildtype'] if bt not in knownbuildtypes.keys(): raise EasyBuildError( "Unknown build type: '%s'. Supported build types: %s", bt, knownbuildtypes.keys()) # fetch option number based on build type option and selected build type build_type_question = r"\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % ( build_type_option, knownbuildtypes[bt]) cmd = ' '.join( [self.cfg['preconfigopts'], './configure', self.cfg['configopts']]) qa = {} no_qa = [".*compiler is.*"] std_qa = { # named group in match will be used to construct answer r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s", } run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True) # make sure correct compilers and compiler flags are being used comps = { 'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc), 'SFC': os.getenv('F90'), 'DM_FC': os.getenv('MPIF90'), 'DM_CC': os.getenv('MPICC'), 'FC': os.getenv('MPIF90'), 'CC': os.getenv('MPICC'), } if self.toolchain.options.get('openmp', None): comps.update({ 'LDFLAGS': '%s %s' % (self.toolchain.get_flag('openmp'), os.environ['LDFLAGS']) }) regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val) for (key, val) in comps.items()] apply_regex_substitutions('configure.wps', regex_subs)
def configure_step(self): """Configure build: - set required environment variables (for netCDF, JasPer) - patch compile script and ungrib Makefile for non-default install paths of WRF and JasPer - run configure script and figure how to select desired build option - patch configure.wps file afterwards to fix 'serial compiler' setting """ # netCDF dependency check + setting env vars (NETCDF, NETCDFF) set_netcdf_env_vars(self.log) # WRF dependency check wrf = get_software_root('WRF') if wrf: wrfdir = os.path.join(wrf, det_wrf_subdir(get_software_version('WRF'))) else: raise EasyBuildError("WRF module not loaded?") # patch compile script so that WRF is found self.compile_script = "compile" regex_subs = [(r"^(\s*set\s*WRF_DIR_PRE\s*=\s*)\${DEV_TOP}(.*)$", r"\1%s\2" % wrfdir)] apply_regex_substitutions(self.compile_script, regex_subs) # libpng dependency check libpng = get_software_root('libpng') zlib = get_software_root('zlib') if libpng: paths = [libpng] if zlib: paths.insert(0, zlib) libpnginc = ' '.join(['-I%s' % os.path.join(path, 'include') for path in paths]) libpnglib = ' '.join(['-L%s' % os.path.join(path, 'lib') for path in paths]) else: # define these as empty, assume that libpng will be available via OS (e.g. due to --filter-deps=libpng) libpnglib = "" libpnginc = "" # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: env.setvar('JASPERINC', os.path.join(jasper, "include")) jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERLIB', jasperlibdir) jasperlib = "-L%s" % jasperlibdir else: raise EasyBuildError("JasPer module not loaded?") # patch ungrib Makefile so that JasPer is found jasperlibs = "%s -ljasper %s -lpng" % (jasperlib, libpnglib) regex_subs = [ (r"^(\s*-L\.\s*-l\$\(LIBTARGET\))(\s*;.*)$", r"\1 %s\2" % jasperlibs), (r"^(\s*\$\(COMPRESSION_LIBS\))(\s*;.*)$", r"\1 %s\2" % jasperlibs), ] apply_regex_substitutions(os.path.join('ungrib', 'src', 'Makefile'), regex_subs) # patch arch/Config.pl script, so that run_cmd_qa receives all output to answer questions patch_perl_script_autoflush(os.path.join("arch", "Config.pl")) # configure # determine build type option to look for self.comp_fam = self.toolchain.comp_family() build_type_option = None if LooseVersion(self.version) >= LooseVersion("3.4"): knownbuildtypes = { 'smpar': 'serial', 'dmpar': 'dmpar' } if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable build_type_option = " Linux x86_64, Intel compiler" elif self.comp_fam == toolchain.GCC: # @UndefinedVariable build_type_option = "Linux x86_64 g95 compiler" else: raise EasyBuildError("Don't know how to figure out build type to select.") else: knownbuildtypes = { 'smpar': 'serial', 'dmpar': 'DM parallel' } if self.comp_fam == toolchain.INTELCOMP: # @UndefinedVariable build_type_option = "PC Linux x86_64, Intel compiler" elif self.comp_fam == toolchain.GCC: # @UndefinedVariable build_type_option = "PC Linux x86_64, gfortran compiler," knownbuildtypes['dmpar'] = knownbuildtypes['dmpar'].upper() else: raise EasyBuildError("Don't know how to figure out build type to select.") # check and fetch selected build type bt = self.cfg['buildtype'] if bt not in knownbuildtypes.keys(): raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, knownbuildtypes.keys()) # fetch option number based on build type option and selected build type build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(?%s\)?\s*\n" % (build_type_option, knownbuildtypes[bt]) cmd = "./configure" qa = {} no_qa = [".*compiler is.*"] std_qa = { # named group in match will be used to construct answer r"%s(.*\n)*Enter selection\s*\[[0-9]+-[0-9]+\]\s*:" % build_type_question: "%(nr)s", } run_cmd_qa(cmd, qa, no_qa=no_qa, std_qa=std_qa, log_all=True, simple=True) # make sure correct compilers and compiler flags are being used comps = { 'SCC': "%s -I$(JASPERINC) %s" % (os.getenv('CC'), libpnginc), 'SFC': os.getenv('F90'), 'DM_FC': os.getenv('MPIF90'), 'DM_CC': os.getenv('MPICC'), 'FC': os.getenv('MPIF90'), 'CC': os.getenv('MPICC'), } regex_subs = [(r"^(%s\s*=\s*).*$" % key, r"\1 %s" % val) for (key, val) in comps.items()] apply_regex_substitutions('configure.wps', regex_subs)
def configure_step(self): """Configure build: - set some magic environment variables - run configure script - adjust configure.wrf file if needed """ # define $NETCDF* for netCDF dependency (used when creating WRF module file) set_netcdf_env_vars(self.log) # HDF5 (optional) dependency hdf5 = get_software_root('HDF5') if hdf5: # check if this is parallel HDF5 phdf5_bins = ['h5pcc', 'ph5diff'] parallel_hdf5 = True for f in phdf5_bins: if not os.path.exists(os.path.join(hdf5, 'bin', f)): parallel_hdf5 = False break if not (hdf5 or parallel_hdf5): raise EasyBuildError("Parallel HDF5 module not loaded?") else: env.setvar('PHDF5', hdf5) else: self.log.info("HDF5 module not loaded, assuming that's OK...") # JasPer dependency check + setting env vars jasper = get_software_root('JasPer') if jasper: jasperlibdir = os.path.join(jasper, "lib") env.setvar('JASPERINC', os.path.join(jasper, "include")) env.setvar('JASPERLIB', jasperlibdir) else: if os.getenv('JASPERINC') or os.getenv('JASPERLIB'): raise EasyBuildError("JasPer module not loaded, but JASPERINC and/or JASPERLIB still set?") else: self.log.info("JasPer module not loaded, assuming that's OK...") # enable support for large file support in netCDF env.setvar('WRFIO_NCD_LARGE_FILE_SUPPORT', '1') # patch arch/Config_new.pl script, so that run_cmd_qa receives all output to answer questions patch_perl_script_autoflush(os.path.join("arch", "Config_new.pl")) # determine build type option to look for build_type_option = None self.comp_fam = self.toolchain.comp_family() if self.comp_fam == toolchain.INTELCOMP: #@UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "INTEL\ \(ifort\/icc\)" else: build_type_option = "Linux x86_64 i486 i586 i686, ifort compiler with icc" elif self.comp_fam == toolchain.GCC: #@UndefinedVariable if LooseVersion(self.version) >= LooseVersion('3.7'): build_type_option = "GNU\ \(gfortran\/gcc\)" else: build_type_option = "x86_64 Linux, gfortran compiler with gcc" else: raise EasyBuildError("Don't know how to figure out build type to select.") # fetch selected build type (and make sure it makes sense) known_build_types = ['serial', 'smpar', 'dmpar', 'dm+sm'] self.parallel_build_types = ["dmpar", "smpar", "dm+sm"] bt = self.cfg['buildtype'] if not bt in known_build_types: raise EasyBuildError("Unknown build type: '%s'. Supported build types: %s", bt, known_build_types) # fetch option number based on build type option and selected build type if LooseVersion(self.version) >= LooseVersion('3.7'): # the two relevant lines in the configure output for WRF 3.8 are: # 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc) # 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc) build_type_question = "\s*(?P<nr>[0-9]+)\.\ \(%s\).*%s" % (bt, build_type_option) else: # the relevant lines in the configure output for WRF 3.6 are: # 13. Linux x86_64 i486 i586 i686, ifort compiler with icc (serial) # 14. Linux x86_64 i486 i586 i686, ifort compiler with icc (smpar) # 15. Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar) # 16. Linux x86_64 i486 i586 i686, ifort compiler with icc (dm+sm) # 32. x86_64 Linux, gfortran compiler with gcc (serial) # 33. x86_64 Linux, gfortran compiler with gcc (smpar) # 34. x86_64 Linux, gfortran compiler with gcc (dmpar) # 35. x86_64 Linux, gfortran compiler with gcc (dm+sm) build_type_question = "\s*(?P<nr>[0-9]+).\s*%s\s*\(%s\)" % (build_type_option, bt) # run configure script cmd = "./configure" qa = { # named group in match will be used to construct answer "Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]:": "1", "Compile for nesting? (0=no nesting, 1=basic, 2=preset moves, 3=vortex following) [default 0]:": "0" } no_qa = [ "testing for fseeko and fseeko64", r"If you wish to change the default options, edit the file:[\s ]*arch/configure_new.defaults" ]