def test___medaka_third_record(self):
medaka_variant_record = retrieve_medaka_entry_from_test_vcf(2)
medaka_vcf = VCFFactory.create_Medaka_VCF_from_VariantRecord_and_Sample(
medaka_variant_record, "SAMPLE")
assert medaka_vcf.genotype == 1
assert math.isclose(medaka_vcf.genotype_confidence,
53.109,
abs_tol=0.0001)
assert medaka_vcf.svtype == "NA"
assert medaka_vcf.coverage == 1000
def test___medaka_fifth_record___gt_2___fails(self):
medaka_variant_record = retrieve_medaka_entry_from_test_vcf(4)
medaka_vcf = VCFFactory.create_Medaka_VCF_from_VariantRecord_and_Sample(
medaka_variant_record, "SAMPLE")
