def test___medaka_third_record(self): medaka_variant_record = retrieve_medaka_entry_from_test_vcf(2) medaka_vcf = VCFFactory.create_Medaka_VCF_from_VariantRecord_and_Sample( medaka_variant_record, "SAMPLE") assert medaka_vcf.genotype == 1 assert math.isclose(medaka_vcf.genotype_confidence, 53.109, abs_tol=0.0001) assert medaka_vcf.svtype == "NA" assert medaka_vcf.coverage == 1000
def test___medaka_fifth_record___gt_2___fails(self): medaka_variant_record = retrieve_medaka_entry_from_test_vcf(4) medaka_vcf = VCFFactory.create_Medaka_VCF_from_VariantRecord_and_Sample( medaka_variant_record, "SAMPLE")