#!/usr/bin/env python
'''
These are the same simulations as submit_param_sweep_grids, except that the
external theta current is replaced by a current with a constant amplitude that
delivers the same charge per theta cycle.
'''
import numpy as np
from grid_cell_model.submitting.noise import SubmissionParser
from param_sweep import submitParamSweep, getBumpCurrentSlope
from default_params import defaultParameters as dp
parser = SubmissionParser()
parser.add_argument('--extra_qsub_params', type=str, default='')
o = parser.parse_args()
for noise_sigma in parser.noise_sigmas:
p = dp.copy()
p['noise_sigma'] = noise_sigma # pA
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = '{0}pA'.format(int(p['noise_sigma']))
appName = 'simulation_grids.py'
rtLimit = o.rtLimit or '05:00:00'
numCPU = 1
blocking = True
timePrefix = False
numRepeat = 1
dry_run = o.dry_run
- Bump is initialized, in the beginning [0, theta_start_t], by a very
strong place cell input.
- The bump moves, with a constant speed, following **vertical** direction.
for the duration of the simulation.
- The speed is controlled by IvelMax and dIvel parameters (currently
[0, 100] pA, with a step of 10 pA
- At the end of each run, spikes from E and I population are exported to
the output file.
'''
import numpy as np
from grid_cell_model.submitting.noise import SubmissionParser
from param_sweep import submitParamSweep
from default_params import defaultParameters as dp
parser = SubmissionParser()
o = parser.parse_args()
for noise_sigma in parser.noise_sigmas:
p = dp.copy()
p['noise_sigma'] = noise_sigma # pA
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = '{0}pA'.format(int(p['noise_sigma']))
appName = 'simulation_velocity.py'
rtLimit = o.rtLimit or '12:00:00'
numCPU = 1
blocking = True
timePrefix = False
#!/usr/bin/env python
'''
These are the same simulations as submit_param_sweep_grids, except that the
external theta current is replaced by a current with a constant amplitude that
delivers the same charge per theta cycle.
'''
import numpy as np
from grid_cell_model.submitting.noise import SubmissionParser
from param_sweep import submitParamSweep, getBumpCurrentSlope
from default_params import defaultParameters as dp
parser = SubmissionParser()
parser.add_argument('--extra_qsub_params', type=str, default='')
o = parser.parse_args()
for noise_sigma in parser.noise_sigmas:
p = dp.copy()
p['noise_sigma'] = noise_sigma # pA
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = '{0}pA'.format(int(p['noise_sigma']))
appName = 'simulation_grids.py'
rtLimit = o.rtLimit or '05:00:00'
numCPU = 1
blocking = True
timePrefix = False
numRepeat = 1
dry_run = o.dry_run
#!/usr/bin/env python
'''Submit job(s) to the cluster/workstation: export connections to file'''
from __future__ import absolute_import, print_function
import numpy as np
from grid_cell_model.submitting.noise import SubmissionParser
from grid_cell_model.submitting.factory import SubmitterFactory
from grid_cell_model.submitting.arguments import ArgumentCreator
from default_params import defaultParameters as dp
parser = SubmissionParser()
parser.add_argument('--probabilistic_synapses',
type=int,
choices=(0, 1),
default=0,
help=('Whether the network should generate '
'synapse weights probabilistically.'))
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = 'connections'
appName = '../common/simulation_connections.py'
rtLimit = o.rtLimit
numCPU = o.nCPU
blocking = True
timePrefix = False
#!/usr/bin/env python
'''Submit job(s) to the cluster/workstation: export connections to file'''
from __future__ import absolute_import, print_function
import numpy as np
from grid_cell_model.submitting.noise import SubmissionParser
from grid_cell_model.submitting.factory import SubmitterFactory
from grid_cell_model.submitting.arguments import ArgumentCreator
from default_params import defaultParameters as dp
parser = SubmissionParser()
parser.add_argument('--probabilistic_synapses', type=int, choices=(0, 1),
default=0, help=('Whether the network should generate '
'synapse weights probabilistically.'))
o = parser.parse_args()
p = dp.copy()
# Submitting
ENV = o.env
simRootDir = o.where
simLabel = 'connections'
appName = '../common/simulation_connections.py'
rtLimit = o.rtLimit
numCPU = o.nCPU
blocking = True
timePrefix = False
numRepeat = 1
dry_run = o.dry_run