Python trim_variant примеры использования

Пример #1

Файл: test_variant_helpers.py Проект: Al3n70rn/isovar

def test_trim_variant_deletion():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "CG", "C"))
    eq_(loc, 11)
    eq_(ref, "G")
    eq_(alt, "")

Пример #2

Файл: test_variant_helpers.py Проект: Al3n70rn/isovar

def test_trim_variant_insertion():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "C", "CG"))
    eq_(loc, 10)
    eq_(ref, "")
    eq_(alt, "G")

Пример #3

Файл: test_variant_helpers.py Проект: Al3n70rn/isovar

def test_trim_variant_substitution():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "C", "G"))
    eq_(loc, 10)
    eq_(ref, "C")
    eq_(alt, "G")

Пример #4

def test_trim_variant_deletion():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "CG", "C"))
    eq_(loc, 11)
    eq_(ref, "G")
    eq_(alt, "")

Пример #5

def test_trim_variant_insertion():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "C", "CG"))
    eq_(loc, 10)
    eq_(ref, "")
    eq_(alt, "G")

Пример #6

def test_trim_variant_substitution():
    loc, ref, alt = trim_variant(Variant("chr1", 10, "C", "G"))
    eq_(loc, 10)
    eq_(ref, "C")
    eq_(alt, "G")