def test_description_not_list_handling():
mm = MRA_Module(testing=True)
content = KQMLList.from_string(
'(BUILD-MODEL :DESCRIPTION ('
':TYPE "Inhibition" '
':SUBJ (:NAME "SB-525334" '
' :DB--REFS (:+TYPE+ "ONT::GENE-PROTEIN" '
' :+TEXT+ "SB525334"'
' :+PUBCHEM+ "9967941")) '
':OBJ (:NAME "TGFBR1"'
' :DB--REFS (:+TYPE+ "ONT::GENE-PROTEIN" '
' :+TEXT+ "TGFBR1" '
' :+HGNC+ "11772" '
' :+UP+ "P36897" '
' :+NCIT+ "C51730")) '
':OBJ--ACTIVITY "activity" '
':BELIEF 1 '
':EVIDENCE ((:SOURCE--API "trips" '
' :SOURCE--HASH -1613118243458052451)) '
':ID "ce486f46-3670-42e6-8f0e-d5f510525352" '
':MATCHES--HASH "-32031145755534420"))''')
try:
reply = mm.respond_build_model(content)
except InvalidModelDescriptionError:
return
assert False, "Model should have explicitly failed: " + reply.to_string()
def test_respond_model_undo_no_model_yet():
mm = MRA_Module(testing=True)
content = KQMLList.from_string('(MODEL-UNDO)')
reply = mm.respond_model_undo(content)
assert reply.gets('model-id') == 'NIL'
action = reply.get('action')
assert action.head() == 'remove_stmts', reply
stmts = action.get('statements')
assert not stmts
def test_respond_model_undo():
mm = MRA_Module(testing=True)
_, content = _get_build_model_request('HRAS activates RAF')
reply = mm.respond_build_model(content)
_, content = _get_expand_model_request('NRAS activates RAF', '1')
expand_reply = mm.respond_expand_model(content)
expand_stmts = expand_reply.gets('model-new')
content = KQMLList.from_string('(MODEL-UNDO)')
reply = mm.respond_model_undo(content)
assert reply.gets('model-id') == '3'
action = reply.get('action')
assert action.head() == 'remove_stmts'
stmts = action.get('statements')
assert json.loads(stmts.string_value()) == json.loads(expand_stmts)
def test_respond_model_undo():
mm = MRA_Module(testing=True)
_, content = _get_build_model_request('HRAS activates RAF')
reply = mm.respond_build_model(content)
_, content = _get_expand_model_request('NRAS activates RAF', '1')
expand_reply = mm.respond_expand_model(content)
expand_stmts = mm.get_statement(expand_reply.get('model-new'))
assert len(expand_stmts) == 1
content = KQMLList.from_string('(MODEL-UNDO)')
reply = mm.respond_model_undo(content)
assert reply.gets('model-id') == '3'
action = reply.get('action')
assert action.head() == 'remove_stmts'
stmts = mm.get_statement(action.get('statements'))
assert len(stmts) == 1
assert stmts[0].equals(expand_stmts[0])
def test_gets():
kl = KQMLList.from_string(b'(:hello "")')
hello = kl.gets('hello')
assert(hello == '')
def test_from_string():
s = b'(FAILURE :reason INVALID_DESCRIPTION)'
kl = KQMLList.from_string(s)
for obj in kl.data:
assert(isinstance(obj, KQMLObject))
def test_gets(self):
kl = KQMLList.from_string('(:hello "")')
hello = kl.gets('hello')
self.assertEqual(hello, '')
def test_from_string(self):
s = '(FAILURE :reason INVALID_DESCRIPTION)'
kl = KQMLList.from_string(s)
for obj in kl.data:
self.assertFalse(isinstance(obj, string_types))