def test_description_not_list_handling(): mm = MRA_Module(testing=True) content = KQMLList.from_string( '(BUILD-MODEL :DESCRIPTION (' ':TYPE "Inhibition" ' ':SUBJ (:NAME "SB-525334" ' ' :DB--REFS (:+TYPE+ "ONT::GENE-PROTEIN" ' ' :+TEXT+ "SB525334"' ' :+PUBCHEM+ "9967941")) ' ':OBJ (:NAME "TGFBR1"' ' :DB--REFS (:+TYPE+ "ONT::GENE-PROTEIN" ' ' :+TEXT+ "TGFBR1" ' ' :+HGNC+ "11772" ' ' :+UP+ "P36897" ' ' :+NCIT+ "C51730")) ' ':OBJ--ACTIVITY "activity" ' ':BELIEF 1 ' ':EVIDENCE ((:SOURCE--API "trips" ' ' :SOURCE--HASH -1613118243458052451)) ' ':ID "ce486f46-3670-42e6-8f0e-d5f510525352" ' ':MATCHES--HASH "-32031145755534420"))''') try: reply = mm.respond_build_model(content) except InvalidModelDescriptionError: return assert False, "Model should have explicitly failed: " + reply.to_string()
def test_respond_model_undo_no_model_yet(): mm = MRA_Module(testing=True) content = KQMLList.from_string('(MODEL-UNDO)') reply = mm.respond_model_undo(content) assert reply.gets('model-id') == 'NIL' action = reply.get('action') assert action.head() == 'remove_stmts', reply stmts = action.get('statements') assert not stmts
def test_respond_model_undo(): mm = MRA_Module(testing=True) _, content = _get_build_model_request('HRAS activates RAF') reply = mm.respond_build_model(content) _, content = _get_expand_model_request('NRAS activates RAF', '1') expand_reply = mm.respond_expand_model(content) expand_stmts = expand_reply.gets('model-new') content = KQMLList.from_string('(MODEL-UNDO)') reply = mm.respond_model_undo(content) assert reply.gets('model-id') == '3' action = reply.get('action') assert action.head() == 'remove_stmts' stmts = action.get('statements') assert json.loads(stmts.string_value()) == json.loads(expand_stmts)
def test_respond_model_undo(): mm = MRA_Module(testing=True) _, content = _get_build_model_request('HRAS activates RAF') reply = mm.respond_build_model(content) _, content = _get_expand_model_request('NRAS activates RAF', '1') expand_reply = mm.respond_expand_model(content) expand_stmts = mm.get_statement(expand_reply.get('model-new')) assert len(expand_stmts) == 1 content = KQMLList.from_string('(MODEL-UNDO)') reply = mm.respond_model_undo(content) assert reply.gets('model-id') == '3' action = reply.get('action') assert action.head() == 'remove_stmts' stmts = mm.get_statement(action.get('statements')) assert len(stmts) == 1 assert stmts[0].equals(expand_stmts[0])
def test_gets(): kl = KQMLList.from_string(b'(:hello "")') hello = kl.gets('hello') assert(hello == '')
def test_from_string(): s = b'(FAILURE :reason INVALID_DESCRIPTION)' kl = KQMLList.from_string(s) for obj in kl.data: assert(isinstance(obj, KQMLObject))
def test_gets(self): kl = KQMLList.from_string('(:hello "")') hello = kl.gets('hello') self.assertEqual(hello, '')
def test_from_string(self): s = '(FAILURE :reason INVALID_DESCRIPTION)' kl = KQMLList.from_string(s) for obj in kl.data: self.assertFalse(isinstance(obj, string_types))