def update(self, params, pdata, ptype = 'temp'):
cfg = params['cfg']
cur_t = params['cur']
gxsec = params['gxsec']
self.ax.cla() # this is a brute-force way to update. I don't know how to update errorbar correctly.
if ptype == 'temp':
self.ax.axis([cur_t-gxsec, cur_t, cfg['tempmin'], cfg['tempmax']]) # [xmin,xmax,ymin,ymax]
elif ptype == 'freq':
self.ax.axis([cur_t-gxsec, cur_t, cfg['freqmin'], cfg['freqmax']]) # [xmin,xmax,ymin,ymax]
plt.axhspan(cfg["freqnorm"], cfg["freqmax"], facecolor='#eeeeee', alpha=0.5)
else:
self.ax.axis([cur_t-gxsec, cur_t, 0, 100]) # [xmin,xmax,ymin,ymax]
pkgid = 0
for t in pdata:
x = t.getlistx()
y = t.getlisty()
e = t.getlisto()
self.ax.plot(x,y,scaley=False,color=params['pkgcolors'][pkgid], label='PKG%d'%pkgid)
self.ax.errorbar(x,y,yerr=e, lw=.2, color=params['pkgcolors'][pkgid], label = '')
pkgid += 1
# we need to update labels everytime because of cla()
self.ax.set_xlabel('Time [S]')
if ptype == 'temp':
self.ax.set_ylabel('Core temperature [C]')
elif ptype == 'freq':
self.ax.set_ylabel('Frequency [GHz]')
else:
self.ax.set_ylabel('Unknown')
self.ax.legend(loc='lower left', prop={'size':9})
def runsimplot(self):
"""
Viz of the MC results
"""
tdmin = self.iniest.td - 3.0*self.iniest.tderr
tdmax = self.iniest.td + 3.0*self.iniest.tderr
fig = plt.figure(figsize=(6, 3))
fig.subplots_adjust(top=0.95, bottom=0.2)
plt.scatter(self.simtruedelays, self.simmesdelays - self.simtruedelays)
plt.xlim(tdmin, tdmax)
plt.xlabel("True delay [day]")
plt.ylabel("Measurement error [day]")
plt.axvline(self.iniest.td - self.iniest.tderr, color="gray", linestyle="-", zorder=20)
plt.axvline(self.iniest.td + self.iniest.tderr, color="gray", linestyle="-", zorder=20)
plt.axhline(0, color="black", linestyle="-", zorder=20)
plt.axhline(- self.iniest.tderr, color="gray", linestyle="-", zorder=20)
plt.axhline(+ self.iniest.tderr, color="gray", linestyle="-", zorder=20)
plt.axhspan(-self.outest.tderr, self.outest.tderr, xmin=0, xmax=1, lw=0, color="red", alpha=0.2)
#plt.ylim(- 2.0*self.iniest.tderr, + 2.0*self.iniest.tderr)
plt.figtext(0.15, 0.8, "Total/initial error ratio: %.2f" % self.totalratio)
#ax = plt.gca()
#plt.figtext(0.15, 0.8, "Intrinsic/initial error ratio: %.2f" % self.intrinsicratio)
#plt.axvline(self.iniest.td - self.iniest.tderr, color="gray", linestyle="-", zorder=20)
#plt.axvline(self.iniest.td + self.iniest.tderr, color="gray", linestyle="-", zorder=20)
#plt.axvline(self.outest.td, color="red", linestyle="-", zorder=20)
plt.savefig(os.path.join(self.plotdir, "measvstrue.png"))
plt.close()
def ScatterPlot(TransitionForces,ListOfSepAndFits,ExpectedContourLength,
OutDir):
"""
Makes a scatter plot of the contour length and transition forces
Args:
TransitionForces: array, each element the transition region for curve i
ListOfSepAndFits: array, each element the output of GetWLCFits
ExpectedContourLength: how long we expect the construct to be
OutDir: base directory, for saving stuff
"""
L0Arr = []
TxArr = []
for (SepNear,FitObj),TransitionFoces in zip(ListOfSepAndFits,
TransitionForces):
MedianTx = np.median(TransitionFoces)
L0,Lp,_,_ = FitObj.Params()
L0Arr.append(L0)
TxArr.append(MedianTx)
# go ahead an throw out ridiculous data from the WLC, where transition
# normalize the contour length to L0
L0Arr = np.array(L0Arr)/ExpectedContourLength
# convert to useful units
L0Plot = np.array(L0Arr)
TxPlot = np.array(TxArr) * 1e12
fig = pPlotUtil.figure(figsize=(12,12))
plt.subplot(2,2,1)
plt.plot(L0Plot,TxPlot,'go',label="Data")
alpha = 0.3
ColorForce = 'r'
ColorLength = 'b'
plt.axhspan(62,68,color=ColorForce,label=r"$F_{\rm tx}$ $\pm$ 5%",
alpha=alpha)
L0BoxMin = 0.9
L0BoxMax = 1.1
plt.axvspan(L0BoxMin,L0BoxMax,color=ColorLength,
label=r"L$_{\rm 0}$ $\pm$ 10%",alpha=alpha)
fudge = 1.05
# make the plot boundaries OK
MaxX = max(L0BoxMax,max(L0Plot))*fudge
MaxY = 90
plt.xlim([0,MaxX])
plt.ylim([0,MaxY])
pPlotUtil.lazyLabel("",r"F$_{\rm overstretch}$ (pN)",
"DNA Characterization Histograms ",frameon=True)
## now make 1-D histograms of everything
# subplot of histogram of transition force
HistOpts = dict(alpha=alpha,linewidth=0)
plt.subplot(2,2,2)
TransitionForceBins = np.linspace(0,MaxY)
plt.hist(TxPlot,bins=TransitionForceBins,orientation="horizontal",
color=ColorForce,**HistOpts)
pPlotUtil.lazyLabel("Count","","")
plt.ylim([0,MaxY])
plt.subplot(2,2,3)
ContourBins = np.linspace(0,MaxX)
plt.hist(L0Plot,bins=ContourBins,color=ColorLength,**HistOpts)
pPlotUtil.lazyLabel(r"$\frac{L_{\rm WLC}}{L_0}$","Count","")
plt.xlim([0,MaxX])
pPlotUtil.savefig(fig,"{:s}Out/ScatterL0vsFTx.png".format(OutDir))
def plot_daily_schedule(df, se, label):
n = se.values()
fig, ax = plt.subplots()
av_start = []
av_end = []
for i in range(len(se)):
dates = n[i][0]
t_start = n[i][1]
t_end = n[i][2]
# plot date vs. start time
plt.plot(dates, t_start , 'o', color='#2396D4', alpha=0.5)
# plot date vs. end time
plt.plot(dates, t_end, 'o', color='#FF7878', alpha=0.5)
avg_start, std_start = avg_time(t_start)
avg_end, std_end = avg_time(t_end)
av_start.append(avg_start)
av_end.append(avg_end)
total_avg_start, total_std_start = avg_time(av_start)
total_avg_end, total_std_end = avg_time(av_end)
tmin_start = (total_avg_start - total_std_start).time()
tmax_start = (total_avg_start + total_std_start).time()
tmin_end = (total_avg_end - total_std_end).time()
tmax_end = (total_avg_end + total_std_end).time()
p = plt.axhspan(tmin_start, tmax_start, fc='#2396D4', ec='#2396D4' , alpha=0.3)
p = plt.axhspan(tmin_end, tmax_end, fc= '#FF7878', ec='#FF7878', alpha=0.3)
a0 = dt.datetime(1900,1,1,1,0,0)
dr = [a0 + dt.timedelta(hours=a) for a in range(24) if a%3==0]
dr2 = [t.time() for t in dr]
plt.ylim(dt.datetime(1900,1,1,0,0,0).time(),dt.datetime(1900,1,1,23,59,59).time())
plt.xticks(rotation=20)
ax.set_yticks(dr2)
hfmt = md.DateFormatter('%m.%d')
ax.xaxis.set_major_formatter(hfmt)
plt.ylabel('Time of day [hr]')
plt.title('Daily Work Schedule')
ax.text(0.02, 0.9, label, transform=ax.transAxes, fontsize=24,
va='top', ha='left', color='gray')
plt.xlim(min(df.date)- dt.timedelta(days=4), max(df.date) + dt.timedelta(days=1))
plt.xlabel('Date')
plt.text(0.03,0.365, "start work", ha='left', transform=ax.transAxes,
color='#1F1AB2', fontsize=12)
plt.text(0.03,0.675, "leave work", ha='left', transform=ax.transAxes,
color='#AB2B52', fontsize=12)
ax.yaxis.grid(True, linestyle='-', which='major', color='lightgrey',
alpha=0.5)
ax.xaxis.grid(True, linestyle='-', which='major', color='lightgrey',
alpha=0.5)
ax.set_axisbelow(True)
fig.tight_layout()
plt.savefig(img_dir+'schedule_'+label.replace(" ",'')+'.png', format="png", dpi=500)
def plot_cs(cp, filename=None):
"cp is a CsParser Object"
bar_len=10
bar_gap=5
if not len(cp.cpus):
return
plt.xlabel("time(ns)")
plt.ylabel("cpu")
plt.title("context switch chart")
axd=cp.get_axis()
plt.axis(axd)
for cpu in cp.cpus:
xy=cp.get_cpu_xy(cpu)
lx, ly = 0, 0
for x, y in xy:
if lx != 0:
plt.axhspan(cpu*3+0.1, (cpu+1)*3-0.1, xmin=float(lx)/float(axd[1]), xmax=float(x)/float(axd[1]),
facecolor=cmap[ly], alpha=0.5)
lx, ly = x, y
plt_show(filename)
def save(x, K1, K2, R, var1, var2, l, n, normalize,
output_dir, save_dat, save_plot):
out_fname = '%s-%s_l=%d_n=%d'%(var1,var2,l,n)
if save_dat:
np.savetxt(os.path.join(output_dir, out_fname+'.dat'),
np.vstack((x, K1, K2)).T)
if save_plot:
varnames = {'c': r'c', 'c2': r'c^2', 'Gamma1': r'\Gamma_1', 'u': r'u',
'rho': r'\rho', 'Y': r'Y', 'psi': r'\psi'}
plt.axhspan(0, 0, ls='dashed')
latex = (varnames[var1], varnames[var2])
plt.plot(x, R*K1, 'r-', label="$RK_{%s,%s}$"%latex)
plt.plot(x, R*K2, 'b-', label="$RK_{%s,%s}$"%latex[::-1])
plt.xlabel(r"r/R")
plt.ylabel(r"$RK^{(n,\ell)}$")
plt.title(r'Kernel for the $\ell=%d,\;n=%d$ mode'%(l,n))
plt.legend(loc='upper left')
#plt.ylim([min(0, min(R*K1), min(R*K2))-0.1,
# max(1, max(R*K1), max(R*K2))+0.1])
plt.ylim([-5, 5])
if normalize:
plt.xlim([0, 1.01])
else:
plt.xlim([0, max(x)])
plt.tight_layout()
plt.savefig(os.path.join(output_dir, out_fname+'.png'))
plt.close()
def main():
"""Create age plot"""
d5_domain = np.linspace(0, 2, 100)
plt.fill_between(d5_domain, sedov_age(d5_domain, 1, 0.1), sedov_age(d5_domain, 1, 1),
label='S-T age, $n_0 \in [0.1, 1]$',
color='blue', alpha=0.25)
plt.fill_between(d5_domain, tau_age(d5_domain, 0.1), tau_age(d5_domain, 1),
label=r'$\tau$ age, $f \in [0.1,1]$',
color='red', alpha=0.25)
plt.axhspan(st_time_for_arbitrary_density(1, 1.4, 1.0),
st_time_for_arbitrary_density(1, 1.4, 0.1),
color='black', alpha=0.1)
plt.axhline(st_time_for_arbitrary_density(1, 1.4, 1.0),
color='black', alpha=0.5)
# Mej = 1.4 M_sun, i.e. use M_chandrasekhar.
#plt.semilogy(d5_domain, st_time_with_norm_derived_density(d5_domain, 1, 1.4, 1), color='black', ls=':')
plt.semilogy(d5_domain, sedov_age(d5_domain, 1, 1), color='blue')
plt.semilogy(d5_domain, tau_age(d5_domain, 1), color='red')
plt.xlabel(r'Distance $d_{5}$, scaled to 5 kpc')
plt.ylabel('Remnant age (yr)')
plt.ylim(10, 50000)
plt.legend(loc='lower right', frameon=False)
plt.tight_layout()
plt.savefig('ms/fig_age_plot.pdf')
plt.show()
def plplotRaw(x, filename):
filename = filename.split('\t')[0]
y = []
xu = unique(x)
xBin = []
for valu in xu:
valb = 0
for val in x:
if valu == val:
valb +=1
xBin.append(valb)
c1 = xu
c2 = xBin
F = plt.figure(1)
h =plt.loglog(c1, c2, 'bo',marker = 'x', markersize=8,markerfacecolor=[1,1,1],markeredgecolor=[0,0,1])
xr1 = pow(10,floor(log(min(x),10)))
xr2 = pow(10,ceil(log(min(x),10)))
yr2 = max(xBin)
plt.axhspan(ymin=0.5,ymax=yr2,xmin=xr1,xmax=xr2)
plt.ylabel('Pr(X >= x)',fontsize=12);
plt.xlabel('x',fontsize=12)
plt.subplots_adjust(left=0.3, bottom=0.3)
F.set_size_inches(3,2)
F.savefig('visual/plplot%s.pdf' % filename)
plt.clf()
return h
def draw_plot(self, x_table, y_table, string_number, sound_name, string_target_frequency):
fig = plt.figure()
ax = fig.add_subplot(111)
ax.set_xlabel('t [s]')
ax.set_ylabel('f [Hz]')
ax.set_title('Struna '+str((string_number+1))+' do dzwieku '+sound_name)
plt.plot(x_table, y_table)
ax.set_xlim(0)
plt.axhline(y=string_target_frequency)
plt.axhspan(string_target_frequency-0.7, string_target_frequency+0.7, xmin=0, facecolor='g', alpha=0.5)
data = ('f0 = '+str(round(y_table[0],2))+' Hz\n'+
'fk = '+str(round(y_table[len(y_table)-1],2))+' Hz\n'+
'fz = '+str(round(string_target_frequency,2))+' Hz\n'+
't = '+str(round(x_table[len(x_table)-1]-x_table[0],2))+' s')
print data
ax.text(0.8, 0.01, data,
verticalalignment='bottom', horizontalalignment='left',
transform=ax.transAxes,
fontsize=11)
plot_name = 'wykres_'+str(string_number)+'.png'
plt.savefig(os.path.join('/home/pi/Dyplom/', plot_name))
plt.clf()
def showav(d, fig=1, yps=50, btop=100000, bw=2000):
bins = np.arange(0, btop, bw)
f = plt.figure(fig)
plt.clf()
cnds = dconds(d)
n = len(cnds)
yl = 0
for i, c in enumerate(cnds):
sp = plt.subplot(1, n, i + 1)
sp.xaxis.set_visible(False)
if i > 0:
sp.yaxis.set_visible(False)
sp.xaxis.set_visible(False)
plt.title(c)
l = len(d[c]['evts'])
for j in range(l):
evts = d[c]['evts'][j]
if evts:
x = np.array(evts)
y = np.zeros_like(x) + j
plt.plot(x, y, marker='.', color='r', linestyle='None')
z = nhplt(flat(d[c]['evts']), bins, color='r', bottom=l + .2 * yps)
yl = max(yl, l + 1.3 * yps)
if d[c]['avgs']:
z = nhplt(flat(d[c]['avgs']), bins, color='b', bottom=l + .1 * yps)
if d[c]['dj']:
for j in range(l):
evts = d[c]['dj'][j]
if evts:
x = np.array(evts)
y = np.zeros_like(x) + j
plt.plot(x, y, marker='.', color='g', linestyle='None')
z = nhplt(flat(d[c]['dj']), bins, color='g', bottom=l + .1 * yps)
if d[c]['avg'] != None:
avl = int(l / 2.0)
if len(d[c]['avg']) == 0:
plt.axhspan(avl, avl + 1, color='b')
else:
x = np.array(d[c]['avg'])
y = np.zeros_like(x) + avl
plt.plot(x, y, marker='o', color='b', markersize=10.0, linestyle='None')
if d[c]['avgvar'] != None:
av = d[c]['avgvar']
a = [0] + list(x) + [max(flat(d[c]['evts']))]
nx = [(a[i] + a[i - 1]) / 2.0 for i in range(1, len(a))]
ny = np.zeros_like(nx) + avl
ye = ([0] * len(av), [v[4] * yps for v in av])
plt.errorbar(nx, ny, yerr=ye, color='k', marker='.',
markersize=4.0, linestyle='None', elinewidth=3)
av = av[:-1]
xmc = np.array([v[1] for v in av])
xe = [v[2] for v in av]
ymc = np.array([v[3] * yps for v in av])
plt.errorbar(x + xmc, y + ymc, xerr=xe, marker='s', color='b',
markersize=6.0, linestyle='None', elinewidth=3)
for i in range(len(cnds)):
sp = plt.subplot(1, n, i + 1)
plt.ylim([0, yl])
f.canvas.draw()
def plotAvgHist(column, field, bins=40):
global subplot
subplot +=1
plt.subplot(subplot)
plt.title( '%s: \nmean=%s std=%s ' % (field, round(mean(column), 3), round(std(column), 3)), fontsize=11 )
plt.axhspan(0, 2000, color='none')
plt.hist( column, bins=bins, range=(0,1))
print '%s: mean=%s std=%s items_under_0.3=%s' % (field, round(mean(column), 3), round(std(column), 3), sum([1 for c in column if c<0.3]) )
def plot_graph():
"""
Plots a graph with specs listed below
:return: a nice matplotlib graph
"""
# sets the parametres of the graph to be plotted
fig, ax = plt.subplots()
# Plots the actual graph out of the above lists
stock_line = plt.plot(datetime_list,
monthly_prices,
color='#33CCFF',
linewidth=3.0,
linestyle='-')
# Demarcates the fields of best and worst performing months
plt.axhspan(ymin=min(best_stock_prices),
ymax=max(best_stock_prices),
xmin=0,
xmax=1,
color='#99CC00')
green_best = mpatches.Patch(color='#99CC00')
plt.axhspan(ymin=min(worst_stock_prices),
ymax=max(worst_stock_prices),
xmin=0,
xmax=1,
color='#FF0066')
red_worst = mpatches.Patch(color='#FF0066')
# all the labelling, ticks based on dates, and some style stuff
ax.set_title(stock_title + '\nHistorical Monthly Prices')
ax.spines["right"].set_visible(False)
ax.spines["top"].set_visible(False)
ax.set_ylabel("$\$$ USD")
ax.xaxis.set_major_locator(years)
ax.xaxis.set_major_formatter(yearsFmt)
ax.xaxis.set_minor_locator(months)
# makes sure the x axis is is as long as the data
datemin = min(datetime_list)
datemax = max(datetime_list)
ax.set_xlim(datemin, datemax)
box = ax.get_position()
ax.set_position([box.x0, box.y0 + box.height * 0.1,
box.width, box.height * 0.9])
# Put a legend below current axis
ax.legend([green_best, red_worst], ['Best Months', 'Worst Months'],
loc=9, bbox_to_anchor=(0.5, -0.1), ncol=3)
# sets the display parametres for mouseover (x = time, y = price)
def price(x): return '$%1.2f'% x
ax.format_xdata = mdates.DateFormatter('%Y/%m')
ax.format_ydata = price
ax.grid(True)
fig.autofmt_xdate()
fig.savefig('bonus_02_visual.png')
plt.show()
def plot_scatter(table, labels, k):
markers = ['o', 'x', '^', '*', 's']
print len(table), len(labels)
tab = np.column_stack((np.array(table), np.array(labels)))
# np.random.shuffle(tab)
# tab = tab[:50000]
# plt.ioff()
#
# plt.plot(tab[:,0], tab[:,1], markers[0])
#
#
# y1 = sorted([x[1] for x in tab if x[0] < 0.5])
# y2 = sorted([x[1] for x in tab if x[0] >= 0.5])
#
# n = len(y1)
#
# plt.axhspan(0, y2[n/3], 0.5, 1, hold=None, fill=False)
# plt.axhspan(y2[n/3], y2[2*n/3], 0.5, 1, hold=None, fill=False)
# plt.axhspan(y2[2*n/3], 1.0, 0.5, 1, hold=None, fill=False)
#
# plt.axhspan(0, y1[n/3], 0, 0.5, hold=None, fill=False)
# plt.axhspan(y1[n/3], y1[2*n/3], 0, 0.5, hold=None, fill=False)
# plt.axhspan(y1[2*n/3], 1.0, 0, 0.5, hold=None, fill=False)
#
#
# for x in range(l):
# for y in range(w):
# plt.axhspan(y*1.0/w, (y+1.0)/w, (x*1.0)/l, (x+1.0)/l, hold=None, fill=False)
for it in range(k):
sub_tab = np.array([np.array(row) for row in tab if int(row[-1]) == int(it)])
plt.plot(sub_tab[:,0], sub_tab[:,1], markers[it%5])
xmin = 2
ymin = 2
xmax = -1
ymax = -1
for row in sub_tab:
if row[0] < xmin:
xmin = row[0]
if row[0] > xmax:
xmax = row[0]
if row[1] < ymin:
ymin = row[1]
if row[1] > ymax:
ymax = row[1]
plt.axhspan(ymin, ymax, xmin, xmax, hold=None, fill=False)
plt.show()
def plot_palette(pa, title=None, xlabel=None, y=None, show_regions=False, show_primary_haps=False,
pair_gap=0, linewidth=6, snp_range=None, colors=None):
'''Generate a haplotype coloring plot from coloring palette pa.'''
# Generate haplotype colors
haps, regions, c = pa.haps, pa.regions, pa.color
colors = colors if colors is not None else list(it.islice(im.plot.colors.get_colors(), pa.num_colors))
# Last color: always gray
colors[-1] = (0.4, 0.4, 0.4)
# Prepare axes
num_haps = len(haps)
y = y if y is not None else map(repr, haps)
xmin, xmax = regions[0][START], regions[-1][STOP]
x_scaled = lambda x: (1.0 * (x - xmin)) / (xmax - xmin)
P.clf()
P.hold(True)
if title is not None: P.title(title)
P.xlim([xmin, xmax])
P.xlabel(xlabel if xlabel else 'SNP #')
P.ylabel('Sample')
hap_ticks = np.arange(0, num_haps)
if pair_gap > 0:
hap_ticks += np.array(list(it.chain.from_iterable(map(lambda x: (x, x), xrange(num_haps / 2)))))
P.yticks(hap_ticks, y)
ymin, ymax = hap_ticks[0] - 0.5, hap_ticks[-1] + 0.5
P.ylim([ymin, ymax])
# Show region boundaries in dashed lines
if show_regions:
boundaries = sorted(set([y for x in pa.regions for y in x]))
print boundaries
for k, boundary in enumerate(boundaries[1:], 1):
P.axvline(x=boundary, linestyle='dotted', linewidth=1, color='k')
P.text(0.5 * (boundaries[k - 1] + boundaries[k]), hap_ticks[0] - 0.4, '%d' % (k - 1,))
# Draw each segment in its corresponding color
for i, j in it.product(xrange(pa.num_haps), xrange(pa.num_regions)):
# Draw lines for all members of the group using the same color
# print '[%d,%d] x %.2f:%.2f y=%.2f color %d' % (regions[j][START], regions[j][STOP], x_scaled(regions[j][START]), x_scaled(regions[j][STOP]), hap_ticks[i], c[i, j])
P.axhspan(xmin=x_scaled(regions[j][START]), xmax=x_scaled(regions[j][STOP]),
ymin=hap_ticks[i] - 0.5 * linewidth, ymax=hap_ticks[i] + 0.5 * linewidth,
color=colors[c[i, j]])
# Draw where primary haplotypes have been identified
if show_primary_haps:
primary = pa.color_sequence()
for k, seq in enumerate(primary):
for i, j in seq:
P.axhspan(xmin=x_scaled(regions[j][START]), xmax=x_scaled(regions[j][STOP]),
ymin=hap_ticks[i] + 0.9 * linewidth, ymax=hap_ticks[i] + 1.1 * linewidth,
color=colors[k])
P.show()
def test_axhspan_epoch():
from datetime import datetime
import matplotlib.testing.jpl_units as units
units.register()
t0 = units.Epoch( "ET", dt=datetime(2009, 1, 20) )
tf = units.Epoch( "ET", dt=datetime(2009, 1, 21) )
dt = units.Duration( "ET", units.day.convert( "sec" ) )
fig = plt.figure()
plt.axhspan( t0, tf, facecolor="blue", alpha=0.25 )
ax = plt.gca()
ax.set_ylim( t0 - 5.0*dt, tf + 5.0*dt )
fig.savefig( 'axhspan_epoch' )
def main():
z = np.arange(-7, 7, 0.1)
phi_z = sigmoid(z)
plt.plot(z, phi_z)
plt.axvline(0.0, color='k')
plt.axhspan(0.0, 1.0, facecolor='1.0', alpha=1.0, ls='dotted')
plt.axhline(y=0.5, ls='dotted', color='k')
plt.yticks([0.0, 0.5, 1.0])
plt.ylim(-0.1, 1.1)
plt.xlabel('z')
plt.ylabel('$\phi (z)$')
plt.show()
def plot(self, win=None, newfig=True, figsize=None, orientation='hor', topfigfrac=0.8):
"""Plot layout
Parameters
----------
win : list or tuple
[x1, x2, y1, y2]
"""
if newfig:
plt.figure(figsize=figsize)
ax1 = None
ax2 = None
if orientation == 'both':
ax1 = plt.axes([0.125, 0.18 + (1 - topfigfrac) * 0.7, (0.9 - 0.125), topfigfrac * 0.7])
ax2 = plt.axes([0.125, 0.11, (0.9 - 0.125), (1 - topfigfrac) * 0.7], sharex=ax1)
elif orientation[:3] == 'hor':
ax1 = plt.subplot()
elif orientation[:3] == 'ver':
ax2 = plt.subplot()
else:
if orientation == 'both':
fig = plt.gcf()
ax1 = fig.axes[0]
ax2 = fig.axes[1]
elif orientation[:3] == 'hor':
fig = plt.gcf()
ax1 = fig.axes[0]
ax2 = None
elif orientation[:3] == 'ver':
fig = plt.gcf()
ax1 = None
ax2 = fig.axes[0]
if ax1 is not None:
plt.sca(ax1)
for e in self.elementlist:
e.plot()
if orientation[:3] == 'hor':
plt.axis('scaled')
elif orientation == 'both':
plt.axis('equal') # cannot be 'scaled' when sharing axes
if win is not None:
plt.axis(win)
if ax2 is not None:
plt.sca(ax2)
for i in range(self.aq.nlayers):
if self.aq.ltype[i] == 'l':
plt.axhspan(ymin=self.aq.z[i + 1], ymax=self.aq.z[i], color=[0.8, 0.8, 0.8])
for i in range(1, self.aq.nlayers):
if self.aq.ltype[i] == 'a' and self.aq.ltype[i - 1] == 'a':
plt.axhspan(ymin=self.aq.z[i], ymax=self.aq.z[i], color=[0.8, 0.8, 0.8])
def instrumentalness():
global esn, visualiser
train_skip = sys.argv[1]
test_skip = sys.argv[2]
pkl = sys.argv[3] if len(sys.argv) > 3 else None
n_forget_points = 0
train_input, train_output, train_splits, test_input, test_output, test_splits, esn = test_data.instrumentalness()
visualiser = Visualiser(esn, output_yscale=.3)
if pkl:
with open(pkl) as f:
esn.unserialize(cPickle.load(f))
else:
esn.train(train_input, train_output, callback=refresh, n_forget_points=n_forget_points, callback_every=int(train_skip), reset_points=train_splits)
visualiser.set_weights()
esn.reset_state()
esn.noise_level = 0
#test_input, test_output, test_splits = train_input, train_output, train_splits
import ipdb; ipdb.set_trace()
print 'test'
estimated_output = esn.test(test_input, n_forget_points=n_forget_points, callback_every=int(test_skip), callback=refresh, reset_points=test_splits, actual_output=test_output * esn.teacher_scaling + esn.teacher_shift)
error = nrmse(estimated_output, test_output)
print 'error: %s' % error
means = []
estimated_means = []
for start, end in zip(test_splits[:-1], test_splits[1:]):
means.append(np.mean(test_output[start:end]))
estimated_means.append(np.mean(estimated_output[start:end]))
plt.plot(means, 'go', markersize=10)
plt.plot(estimated_means, 'r*', markersize=10)
for i, (out, est) in enumerate(zip(means, estimated_means)):
if out > est:
col = 'c'
else:
col = 'y'
i /= float(len(means))
plt.axhspan(out, est, i - .005, i + 0.005, color=col)
plt.show()
def plot_2D(self, file_name, var1, var2, nbins1, nbins2, xmin1, xmax1,
xmin2, xmax2, **kwargs):
vals1 = []
wgts = []
vals2 = []
cuts = kwargs.get('cuts', '(True)')
title = kwargs.get('title', '')
xlab = kwargs.get('xlab','')
ylab = kwargs.get('ylab','')
cut = "%s & %s" % (self.base_selections, cuts)
for mc in self.sample_order:
self.log.info("Processing MC: %s" % mc)
for sample_name in self.sample_groups[mc]["sample_names"]:
with tb.open_file("%s/%s.h5" % (self.ntuple_dir, sample_name),
'r') as h5file:
for chan in self.channels:
table = getattr(getattr(h5file.root, self.analysis),
chan)
vals1 += [x[var1] for x in table.where(cut)]
vals2 += [x[var2] for x in table.where(cut)]
scale = self.lumi * xsec.xsecs[sample_name] / \
xsec.nevents[sample_name]
wgts += [x['pu_weight'] * x['lep_scale'] * \
scale for x in table.where(cut)]
plt.figure(figsize=(6, 5))
(n, xbins, ybins, Image) = plt.hist2d(
vals1, vals2,
bins=[nbins1,nbins2],
range=[[xmin1,xmax1],[xmin2,xmax2]],
weights=wgts)
plt.colorbar()
plt.title(title)
plt.xlabel(xlab, ha='right', position=(1,0), size='larger')
plt.ylabel(ylab, ha='right', position=(0,1), size='larger')
plt.axhspan(450,550,0.375,0.625,fill=False,edgecolor='white')
plt.tight_layout(0.5)
self.log.info("Generating Histogram: %s:%s, %s/%s" % (var1,var2, self.out_dir, file_name))
plt.savefig("%s/%s" % (self.out_dir, file_name))
plt.clf()
def vitals_bp(request, id):
"""
"""
from ocemr.models import Patient, VitalType, Vital
p = Patient.objects.get(pk=id)
vt_bpS= VitalType.objects.get(title="BP - Systolic")
v_bpS=Vital.objects.filter(patient=p,type=vt_bpS)
bpS_date_list=[]
bpS_data_list=[]
for v in v_bpS:
bpS_date_list.append(v.observedDateTime)
bpS_data_list.append(v.data)
vt_bpD= VitalType.objects.get(title="BP - Diastolic")
v_bpD=Vital.objects.filter(patient=p,type=vt_bpD)
bpD_date_list=[]
bpD_data_list=[]
for v in v_bpD:
bpD_date_list.append(v.observedDateTime)
bpD_data_list.append(v.data)
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig = plt.figure(figsize=(10,5),dpi=75)
fig.interactive = False
plt.title('Blood Pressure History for %s'%(p))
plt.grid(True)
plt.axhspan(ymin=90, ymax=140, color='b',alpha=.2)
plt.axhspan(ymin=60, ymax=90, color='g',alpha=.2)
plt.axhline(y=120, color='b')
plt.axhline(y=80, color='g')
plt.plot(bpS_date_list, bpS_data_list, 'o-', color='r', label="systolic")
plt.plot(bpD_date_list, bpD_data_list, 'o-', color='m', label="diastolic")
plt.ylabel('mmHg')
plt.legend(loc=0)
fig.autofmt_xdate()
fig.text(0.15, 0.33, 'OCEMR',
fontsize=150, color='gray',
alpha=0.07)
plt.draw()
canvas = matplotlib.backends.backend_agg.FigureCanvasAgg(fig)
response = HttpResponse(content_type='image/png')
canvas.print_png(response)
plt.close(fig)
return response
def plotTimeline(a, filename):
# Converts str into a datetime object.
conv = lambda s: dt.datetime.strptime(s, '%H:%M:%S:%f')
# Use numpy to read the data in.
data = np.genfromtxt(a, converters={1: conv, 2: conv}, \
names=['caption', 'start', 'stop', 'state'], \
dtype=None, delimiter=",")
cap, start, stop = data['caption'], data['start'], data['stop']
# Check the status, because we paint all lines with the same color
# together
is_ok = (data['state'] == 'OK')
not_ok = np.logical_not(is_ok)
# Get unique captions and there indices and the inverse mapping
captions, unique_idx, caption_inv = np.unique(cap, 1, 1)
# Build y values from the number of unique captions.
y = (caption_inv + 1) / float(len(captions) + 1)
# Plot ok tl black
timelines(y[is_ok], start[is_ok], stop[is_ok], 'k')
# Plot fail tl red
timelines(y[not_ok], start[not_ok], stop[not_ok], 'r')
# Setup the plot
ax = plt.gca()
fig = ax.get_figure()
fig.set_figheight(6)
fig.set_figwidth(18)
ax.xaxis_date()
myFmt = DateFormatter('%H:%M:%S')
ax.xaxis.set_major_formatter(myFmt)
ax.xaxis.set_major_locator(SecondLocator(interval=10)) # used to be SecondLocator(0, interval=20)
plt.axhspan(0.19, 1, facecolor='0.8', alpha=0.5)
# To adjust the xlimits a timedelta is needed.
delta = (stop.max() - start.min())/10
plt.yticks(y[unique_idx], captions, size=14)
# plt.ylim(0,1)
plt.tight_layout()
plt.gcf().subplots_adjust(bottom=0.1)
plt.xticks(size = 14)
plt.xlim(start.min()-delta, stop.max()+delta)
plt.xlabel('Timeline', size=17)
plt.savefig(filename, format='eps', dpi=200)
def viz_csv(rmn_traj, rmn_descs,
min_length=10,
smallest_shift=1, max_viz=False,
fig_dir=None):
for book in rmn_traj:
for rel in rmn_traj[book]:
rtraj = rmn_traj[book][rel]
if len(rtraj) > min_length and len(rtraj)<150:
print book, rel
plt.close()
rtraj_mat = array(rtraj)
if max_viz:
plt.title(book + ': ' + rel)
plt.axis('off')
max_rtraj = argmax(rtraj_mat, axis=1)
rcenter_inds = compute_centers(max_rtraj, smallest_shift)
for ind in range(0, len(max_rtraj)):
topic = max_rtraj[ind]
plt.axhspan(ind, ind+1, 0.2, 0.4, color=color_list[topic])
if ind in rcenter_inds:
loc = (0.43, ind + 0.5)
plt.annotate(rmn_descs[topic], loc, size=15,
verticalalignment='center',
color=color_list[topic])
plt.xlim(0, 1.0)
plt.arrow(0.1,0,0.0,len(rtraj),
head_width=0.1, head_length=len(rtraj)/12, lw=3,
length_includes_head=True, fc='k', ec='k')
props = {'ha': 'left', 'va': 'bottom',}
plt.text(0.0, len(rtraj) / 2, 'TIME', props, rotation=90, size=15)
props = {'ha': 'left', 'va': 'top',}
if fig_dir is None:
plt.show()
else:
chars = rel.split(' AND ')
fig_name = fig_dir + book + \
'__' + chars[0] + '__' + chars[1] + '.png'
print 'figname = ', fig_name
plt.savefig(fig_name)
def comparing_humi_temps_from_dataframe_by_day(dataframe_thermo, dataframe_SHT1x, string_day, temp_param_MAX, temp_param_MIN, temp_MAX, temp_MIN, temp_limit_SUP, temp_limit_INF, humi_limit_SUP, humi_limit_INF):
f, axarr = plt.subplots(2, sharex=True)
# First subplot
plt.subplot(2, 1, 1)
today_plot_thermo = dataframe_thermo.TEMP_LOG[string_day]
plt.ylim(temp_limit_INF, temp_limit_SUP)
y=np.arange(temp_limit_INF, temp_limit_SUP, 0.2)
plt.grid()
plt.yticks(y)
today_plot_thermo.plot()
plt.axhspan(temp_param_MIN, temp_param_MAX, facecolor='g', alpha=0.2)
plt.axhspan(temp_MIN, temp_MAX, facecolor='g', alpha=0.2)
plt.ylabel('Temperature (C)')
plt.xlabel('')
# Second subplot
plt.subplot(2, 1, 2)
today_plot_SHT1x_humi = dataframe_SHT1x.humi[string_day]
today_plot_SHT1x_temp = dataframe_SHT1x.temp[string_day]
plt.ylim(humi_limit_INF, humi_limit_SUP)
plt.grid()
today_plot_SHT1x_humi.plot()
plt.axhspan(humi_param_MIN, humi_param_MAX, facecolor='g', alpha=0.2)
plt.axhspan(humi_MIN, humi_MAX, facecolor='g', alpha=0.2)
plt.ylabel('Humidity (%)')
plt.xlabel('Hours')
# Pearson correlation: http://en.wikipedia.org/wiki/Pearson_product-moment_correlation_coefficient
# 0 implies that there is no linear correlation between the variables.
pearson_corr_index = today_plot_SHT1x_temp.corr(today_plot_SHT1x_humi)
plt.suptitle('Correlation between temperature and humidity\n')
plt.suptitle('\n\nCalculated Pearson correlation index: %.2f' % pearson_corr_index, color='b')
plt.savefig('static/data/comparing_humi_temps_%s.png' % string_day, orientation='landscape')
plt.close()
def bestResponseAsAfunctionOfCostAndPrx():
#plot best response variation as function of I+N and cost
player = Player(10001, 25, 2, 1000.00, player_number=1, game_Type=0)
#give the node id which cause interference to player
tx2_node_id = 16
#I want to determine the maximum level of interference
#average direct gain
hii = GainCalculations.getAverageGain(player.coordinator_id, player.tx_node.node_id, player.rx_node.node_id, year=2013, month=8, day=23)
#maximum cross gain
hji = GainCalculations.getMinMaxGain(10001, tx2_node_id, player.rx_node.node_id, year=2013, month=8, day=24)
#get average noise
noise = GainCalculations.getAverageNoise(player.coordinator_id, player.tx_node.node_id, player.rx_node.node_id, year=2013, month=8, day=23)
max_interference_and_noise = 0.001*hji[1] + noise
max_interference_and_noise = 10.00*math.log10(max_interference_and_noise/0.001)
interference_and_noise = numpy.arange(max_interference_and_noise, max_interference_and_noise-10, -2)
cost = numpy.arange(100, 10000, 0.1)
#now plot results
plot.ioff()
plot.clf()
plot.grid()
plot.title("B%d (c%d, I+N)" %(player.player_number, player.player_number))
plot.xlabel("c%d" %(player.player_number))
plot.ylabel("B%d [dBm]" %(player.player_number))
for i in interference_and_noise:
tmp_list = []
tmp_cost = []
for c in cost:
tmp_bi = getBi(c, math.pow(10.00, i/10.00)*0.001, 10.00*math.log10(hii))
if tmp_bi!=None:
tmp_list.append(tmp_bi)
tmp_cost.append(c)
plot.plot(tmp_cost, tmp_list, label = "I+N=%.1f dBm" %i)
plot.plot([],[],label = "h%d%d = %.3f dB" %(player.player_number, player.player_number, 10.00*math.log10(hii)))
plot.axhspan(-55, 0, alpha = 0.1)
plot.legend(bbox_to_anchor=(1.05, 1.05))
plot.show()
#bestResponseAsAfunctionOfCostAndPrx()
#bestResponseAsAFunctionOfDirectGain()
#bestResponseAsAFunctionOfRx()
def agdd_plots(nplots, iplot, tbase, tmax, t_range, temp, agdd):
"""This function does the AGDD plots in a nplots vertical stack of plots.
iplot is the current plot (from top to bottom, starting at 1), tbase and
tmax are the values used for AGDD calculations. t_range is a temporal range
(usually DoY) and temp and AGDD are extracted 2m temperature and AGDD"""
plt.subplot(nplots, 1, iplot)
# Put a grey area for the AGDD calculation bounds
plt.axhspan(tbase, tmax, xmin=0, xmax=366, color="0.9")
# Plot temperature
plt.plot(t_range, temp, "-r", label="Tm")
plt.ylabel("Mean Temp [degC]")
plt.grid(True)
plt.twinx()
plt.plot(t_range, agdd, "-g", label="AGDD")
plt.ylabel("AGDD [degC]")
def plot(self,timeFrameToAlphabetListSorted):
for price in timeFrameToAlphabetListSorted:
alphabetList=timeFrameToAlphabetListSorted[price]
alphabet = r' '.join(alphabetList)
plt.yticks(range(self.minY, self.maxY))
plt.xticks(range(self.minX, self.maxX))
txt = self.ax.text(self.currentDay, price, alphabet, fontsize=10)
mng = plt.get_current_fig_manager()
mng.resize(*mng.window.maxsize())
totalSizeOfDictionary=len(timeFrameToAlphabetListSorted)
if totalSizeOfDictionary >1:
minVal=timeFrameToAlphabetListSorted.keys()[0]
maxVal=timeFrameToAlphabetListSorted.keys()[totalSizeOfDictionary-1]
plt.axhspan(ymin=minVal-1,ymax=maxVal,xmin=0, xmax=1,facecolor='0.5', alpha=0.5)
plt.draw()
plt.pause(0.001)
def vitals_hrrr(request, id):
"""
"""
from ocemr.models import Patient, VitalType, Vital
p = Patient.objects.get(pk=id)
vt_hr = VitalType.objects.get(title="HR")
v_hr = Vital.objects.filter(patient=p, type=vt_hr)
hr_date_list = []
hr_data_list = []
for v in v_hr:
hr_date_list.append(v.observedDateTime)
hr_data_list.append(v.data)
vt_rr = VitalType.objects.get(title="RR")
v_rr = Vital.objects.filter(patient=p, type=vt_rr)
rr_date_list = []
rr_data_list = []
for v in v_rr:
rr_date_list.append(v.observedDateTime)
rr_data_list.append(v.data)
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
fig = plt.figure(num=1, figsize=(10, 5), dpi=75)
fig.interactive = False
plt.title("Heart / Resp Rate History for %s" % (p))
plt.grid(True)
plt.axhspan(ymin=60, ymax=80, color="b", alpha=0.33)
plt.axhspan(ymin=10, ymax=20, color="g", alpha=0.33)
plt.axhline(y=12, color="g")
plt.plot(hr_date_list, hr_data_list, "o-", color="r", label="Heart")
plt.plot(rr_date_list, rr_data_list, "o-", color="m", label="Resp")
plt.ylabel("rate (bpm)")
l = plt.legend(loc=0)
fig.autofmt_xdate()
fig.text(0.15, 0.33, "OCEMR", fontsize=150, color="gray", alpha=0.07)
plt.draw()
canvas = matplotlib.backends.backend_agg.FigureCanvasAgg(fig)
response = HttpResponse(content_type="image/png")
canvas.print_png(response)
matplotlib.pyplot.close(fig)
return response
def __init__(self, *args, **kwargs):
import matplotlib as mpl
import matplotlib.pyplot as plt
from collections import deque
kwargs["gui"] = True
super(tqdm_gui, self).__init__(*args, **kwargs)
# Initialize the GUI display
if self.disable or not kwargs["gui"]:
return
self.fp.write("Warning: GUI is experimental/alpha\n")
self.mpl = mpl
self.plt = plt
self.sp = None
# Remember if external environment uses toolbars
self.toolbar = self.mpl.rcParams["toolbar"]
self.mpl.rcParams["toolbar"] = "None"
self.mininterval = max(self.mininterval, 0.5)
self.fig, ax = plt.subplots(figsize=(9, 2.2))
# self.fig.subplots_adjust(bottom=0.2)
if self.total:
self.xdata = []
self.ydata = []
self.zdata = []
else:
self.xdata = deque([])
self.ydata = deque([])
self.zdata = deque([])
self.line1, = ax.plot(self.xdata, self.ydata, color="b")
self.line2, = ax.plot(self.xdata, self.zdata, color="k")
ax.set_ylim(0, 0.001)
if self.total:
ax.set_xlim(0, 100)
ax.set_xlabel("percent")
self.fig.legend((self.line1, self.line2), ("cur", "est"), loc="center right")
# progressbar
self.hspan = plt.axhspan(0, 0.001, xmin=0, xmax=0, color="g")
else:
# ax.set_xlim(-60, 0)
ax.set_xlim(0, 60)
ax.invert_xaxis()
ax.set_xlabel("seconds")
ax.legend(("cur", "est"), loc="lower left")
ax.grid()
# ax.set_xlabel('seconds')
ax.set_ylabel((self.unit if self.unit else "it") + "/s")
if self.unit_scale:
plt.ticklabel_format(style="sci", axis="y", scilimits=(0, 0))
ax.yaxis.get_offset_text().set_x(-0.15)
# Remember if external environment is interactive
self.wasion = plt.isinteractive()
plt.ion()
self.ax = ax
def test_axhspan_epoch():
from datetime import datetime
import matplotlib.testing.jpl_units as units
units.register()
# generate some data
t0 = units.Epoch("ET", dt=datetime(2009, 1, 20))
tf = units.Epoch("ET", dt=datetime(2009, 1, 21))
dt = units.Duration("ET", units.day.convert("sec"))
fig = plt.figure()
plt.axhspan(t0, tf, facecolor="blue", alpha=0.25)
ax = plt.gca()
ax.set_ylim(t0 - 5.0 * dt, tf + 5.0 * dt)
def shade(ax, region=[None, None, None, None]):
""" Shade a rectangular region specified
"""
if region == [None, None, None, None]:
return
else:
raise Exception("FINISH")
p = plt.axhspan(0.25, 0.75, facecolor='0.5', alpha=0.5)
def plot_rating_bg(ranks):
ymin, ymax = plt.gca().get_ylim()
bgcolor = plt.gca().get_facecolor()
for rank in ranks:
plt.axhspan(
rank.low,
rank.high,
facecolor=rank.color_graph,
alpha=0.8,
edgecolor=bgcolor,
linewidth=0.5,
)
locs, labels = plt.xticks()
for loc in locs:
plt.axvline(loc, color=bgcolor, linewidth=0.5)
plt.ylim(ymin, ymax)
def comparing_temps_from_dataframe_by_day(dataframe_thermo, dataframe_SHT1x, string_day, temp_param_MAX, temp_param_MIN, temp_MAX, temp_MIN, temp_limit_SUP, temp_limit_INF):
plt.title('Comparation of the temperatures of day %s' % string_day)
today_plot_thermo = dataframe_thermo.TEMP_LOG[string_day]
today_plot_SHT1x = dataframe_SHT1x.temp[string_day]
plt.ylim(temp_limit_INF, temp_limit_SUP)
y=np.arange(temp_limit_INF, temp_limit_SUP, 0.2)
plt.grid()
plt.yticks(y)
today_plot_thermo.plot()
today_plot_SHT1x.plot()
plt.axhspan(temp_param_MIN, temp_param_MAX, facecolor='g', alpha=0.2)
plt.axhspan(temp_MIN, temp_MAX, facecolor='g', alpha=0.2)
legend( ('thermo', 'SHT1x', 'Recommended zone') , loc = 'upper right')
plt.ylabel('Temperature (%sC)' % degree_sign)
plt.xlabel('Hours')
plt.savefig('static/data/comparing_temps_%s.png' % string_day, orientation='landscape')
plt.close()
def vitals_temp(request, id):
"""
"""
from ocemr.models import Patient, VitalType, Vital
p = Patient.objects.get(pk=id)
vt_temp = VitalType.objects.get(title="Temp")
v_temp = Vital.objects.filter(patient=p, type=vt_temp)
temp_date_list = []
temp_data_list = []
for v in v_temp:
temp_date_list.append(v.observedDateTime)
temp_data_list.append(v.data)
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig = plt.figure(num=1, figsize=(10, 5), dpi=75)
fig.interactive = False
plt.title('Temperature History for %s' % (p))
plt.grid(True)
plt.axhspan(ymin=36.3, ymax=37.3, color='g', alpha=.5)
plt.axhline(y=37, color='g')
plt.plot(temp_date_list, temp_data_list, 'o-', color='r', label="Temp")
plt.ylabel('degrees C')
plt.legend(loc=0)
try:
plt.xlim(
matplotlib.dates.date2num(min(temp_date_list)) - 1,
matplotlib.dates.date2num(max(temp_date_list)) + 1,
)
except ValueError:
pass
fig.autofmt_xdate()
fig.text(0.15, 0.33, 'OCEMR', fontsize=150, color='gray', alpha=0.07)
plt.draw()
canvas = matplotlib.backends.backend_agg.FigureCanvasAgg(fig)
import StringIO
output = StringIO.StringIO()
canvas.print_png(output, format='png')
response = HttpResponse(output.getvalue(), content_type='image/png')
matplotlib.pyplot.close(fig)
return response
def display_DDC(self):
plt.close('all')
plt.figure(1)
plt.plot(self.ECD.calcul_DDCS()[0], self.ECD.calcul_DDCS()[1], "g-o")
plt.plot(self.ECD.calcul_DDCD()[0], self.ECD.calcul_DDCD()[1], "r-x")
plt.xlabel('Vce (V)')
plt.ylabel('Ic (A)')
plt.title('Droite de charge')
plt.legend(["Statique", "Dynamique"])
plt.grid()
plt.ticklabel_format(style='sci', axis='y', scilimits=(0, 0))
plt.annotate(s="Point de polarisation",
xy=(self.ECD.Vceq, self.ECD.Icq))
plt.annotate(s="Icmax: {:.2e}".format(self.ECD.calcul_DDCS()[1][0]),
xy=(self.ECD.calcul_DDCS()[0][0],
self.ECD.calcul_DDCS()[1][0]))
plt.annotate(s="icmax: {:.2e}".format(self.ECD.calcul_DDCD()[1][0]),
xy=(self.ECD.calcul_DDCD()[0][0],
self.ECD.calcul_DDCD()[1][0]))
plt.annotate(
s="vcemax: {}".format(round(self.ECD.calcul_DDCD()[0][2], 2)),
xy=(self.ECD.calcul_DDCD()[0][2], self.ECD.calcul_DDCD()[1][2]))
xmin, xmax, ymin, ymax = self.ECD.calcul_dynamic_limits()
plt.axvspan(xmin, xmax, ymin=0, ymax=1, alpha=0.2)
plt.axvline(xmin, linestyle="dotted")
plt.axvline(xmax, linestyle="dotted")
plt.axhspan(ymin, ymax, xmin=0, xmax=1, alpha=0.2, facecolor='g')
plt.axhline(ymin, linestyle="dotted", color='g')
plt.axhline(ymax, linestyle="dotted", color='g')
plt.annotate("",
xy=(xmin, ymin),
xytext=(xmin, ymax),
arrowprops=dict(arrowstyle="<->"))
plt.annotate("Δic", xy=(0, 0), xytext=(xmin, self.ECD.Icq))
plt.annotate("",
xy=(xmin, ymin),
xytext=(xmax, ymin),
arrowprops=dict(arrowstyle="<->"))
plt.annotate("Δvce", xy=(0, 0), xytext=(self.ECD.Vceq, ymin))
plt.show()
pass
def main(inargs):
"""Run the program."""
df = pd.read_csv(inargs.infile)
df.set_index(df['model'], drop=True, inplace=True)
#df.set_index(df['model'] + ' (' + df['run'] + ')', drop=True, inplace=True)
x = np.arange(df.shape[0])
ncmip5 = df['project'].value_counts()['cmip5']
df_ohc = df[[
'OHC (J yr-1)', 'thermal OHC (J yr-1)', 'barystatic OHC (J yr-1)'
]]
sec_in_year = 365.25 * 24 * 60 * 60
earth_surface_area = 5.1e14
df_ohc = (df_ohc / sec_in_year) / earth_surface_area
df_ohc = df_ohc.rename(
columns={
"OHC (J yr-1)":
"change in OHC ($dH/dt$)",
"thermal OHC (J yr-1)":
"change in OHC temperature component ($dH_T/dt$)",
"barystatic OHC (J yr-1)":
"change in OHC barystatic component ($dH_m/dt$)"
})
df_ohc.plot.bar(figsize=(18, 6),
color=['#272727', 'tab:red', 'tab:blue'],
width=0.9,
zorder=2)
plt.axhspan(0.4, 1.0, color='0.95', zorder=1)
plt.axvline(x=ncmip5 - 0.5, color='0.5', linewidth=2.0)
units = 'equivalent planetary energy imbalance (W m$^{-2}$)'
plt.ylabel(units)
plt.axvline(x=x[0] - 0.5, color='0.5', linewidth=0.1)
for val in x:
plt.axvline(x=val + 0.5, color='0.5', linewidth=0.1)
quartiles = get_quartiles(df_ohc, "change in OHC ($dH/dt$)", df['project'],
units)
plt.savefig(inargs.outfile, bbox_inches='tight', dpi=400)
log_file = re.sub('.png', '.met', inargs.outfile)
log_text = cmdprov.new_log(git_repo=repo_dir, extra_notes=quartiles)
cmdprov.write_log(log_file, log_text)
def plt_sigmoid(data, w):
# 其拟合方程形式为f(x)=w0+w1*x1+w2*x2....
# 生成两个矩阵
data = np.mat(data)
w = np.array(w)
z = data * np.transpose(w) # 矩阵转置，相乘后得到z值
z.sort(axis=0)
# 画sigmoid函数
phi_z = sigmoid(z)
plt.plot(z, phi_z)
plt.axvline(0.0, color='k')
plt.axhspan(0.0, 1.0, facecolor='1.0', alpha=1.0, ls='dotted')
plt.yticks([0.0, 0.5, 1.0])
plt.ylim(-0.1, 1.1)
plt.xlabel('z')
plt.ylabel('$\phi (z)$')
plt.show()
def graph_w_T(t, catal):
plt.gca().invert_yaxis()
plt.title('Well temperature,K time = ' + str(t) + 's')
plt.xlabel('T, K')
plt.ylabel('depth, m')
plt.grid(color='gray', linestyle='dashed')
plast_cout = len(plast.ht)
for j in range(plast_cout):
plt.axhspan(float(plast.ht[j]),
float(plast.hb[j]),
facecolor='0.5',
alpha=0.5)
plt.plot(well.Tgeo, well.z, label='geotherm')
plt.plot(well.T, well.z, label='well temper')
plt.legend()
plt.savefig(catal + '/' + 'Temp-well_' + str(t) + '.png')
plt.draw()
plt.close()
def quartile_bins_viz(data, column, ylabel, title, figsize=(15, 8)):
"""Visualize quartile bins."""
ax = data.plot(y=column, figsize=figsize, color='black', title=title)
xlims = ax.get_xlim()
for bin_name, hatch, bounds in zip(
[r'$Q_1$', r'$Q_2$', r'$Q_3$', r'$Q_4$'],
['\\\\\\', '', '///', '||||'],
pd.qcut(data.volume, q=4).unique().categories.values
):
plt.axhspan(bounds.left, bounds.right, alpha=0.2, label=bin_name, hatch=hatch, color='black')
plt.annotate(f' {bin_name}', xy=(xlims[0], (bounds.left + bounds.right) / 2.1), fontsize=11)
ax.set(xlabel='', ylabel=ylabel)
plt.legend(bbox_to_anchor=(1, 0.67), frameon=False, fontsize=14)
return ax
def low_med_high_bins_viz(data, column, ylabel, title, figsize=(15, 3)):
"""Visualize the low, medium, and high equal-width bins."""
ax = data.plot(y=column, figsize=figsize, color='black', title=title)
xlims = ax.get_xlim()
for bin_name, hatch, bounds in zip(
['low', 'med', 'high'],
['///', '', '\\\\\\'],
pd.cut(data[column], bins=3).unique().categories.values
):
plt.axhspan(bounds.left, bounds.right, alpha=0.2, label=bin_name, hatch=hatch, color='black')
plt.annotate(f' {bin_name}', xy=(xlims[0], (bounds.left + bounds.right) / 2.1), ha='left')
ax.set(xlabel='', ylabel=ylabel)
plt.legend(bbox_to_anchor=(1, 0.75), frameon=False)
return ax
def decorate_plot(self, hconst=None, vconst=None):
"""Decorate the plot with an optional horizontal and vertical constant
"""
# Plotting an additional constant
if isinstance(hconst, (np.ndarray, list, tuple)):
plt.axhline(hconst[0], color='#b58900')
plt.text(X[0], hconst[0] + X[0] / 100., label[5])
plt.axhspan(hconst[0] + hconst[1],
hconst[0] - hconst[1],
alpha=0.35,
color='gray')
if isinstance(vconst, (np.ndarray, list, tuple)):
plt.axvline(vconst[0], color='#859900')
plt.text(vconst[0], Y[0], label[6])
plt.axvspan(vconst[0] + vconst[1],
vconst[0] - vconst[1],
alpha=0.35,
color='gray')
def show_chain_evolution(samples):
# measurement indicators
x_vals = Settings.Simulation.get_xvals()
measurer = create_measurer()
measurement_lims = zip(measurer.left_limits, measurer.right_limits)
for l_idx, r_idx in measurement_lims:
plt.axhspan(x_vals[l_idx], x_vals[r_idx], facecolor='r', alpha=0.3)
# ground truth lines
for a in Settings.Simulation.IC.ground_truth:
plt.axhline(a, color='k')
# actual chain values
for i in range(3):
plt.plot(samples[i, :], label=Settings.Simulation.IC.names[i])
# shock locations
shock_locs = [
BurgersEquation.riemann_shock_pos(samples[0, i] + 1, samples[1, i],
samples[2, i],
Settings.Simulation.T_end)
for i in range(len(samples[0, :]))
]
plt.plot(shock_locs, label="Shock location")
# computed characteristics
# l_b = len_burn_in(samples)
# if l_b == len(samples[0, :]):
# tau = "burn-in not finished"
# else:
# tau = uncorrelated_sample_spacing(samples[:, l_b:])
# plt.text(0, 1.6, f"burn-in: {l_b}\ndecorrelation-length: {tau}")
# characteristics
plt.text(0, 1.6, (
f"burn-in: {Settings.Sampling.burn_in}\n"
f"sampling-interval: {Settings.Sampling.sample_interval}\n"
f"usable samples: {(Settings.Sampling.N - Settings.Sampling.burn_in)/Settings.Sampling.sample_interval}"
))
plt.ylim(-1, 1.8)
plt.title("Chain evolution")
plt.legend()
store_figure(Settings.filename() + "_chain")
def plot_data(rank_dates, rank_data, filename):
min_rank = min(rank_data)
max_rank = max(rank_data)
a = strict_floor(min_rank)
b = strict_ceil(max_rank)
#plt.plot([1,2,3,4])
plt.plot(rank_dates, rank_data, marker="o")
NEXT_GAP = 0.15
TO_JUMP = 0.6
def adjust(limit, x):
return limit if abs(x - limit) < TO_JUMP else x
lower_limit = adjust(a, min_rank) - NEXT_GAP
upper_limit = adjust(b, max_rank) + NEXT_GAP
plt.yticks(*calculate_ticks(a, b))
#plt.tick_params(axis='x', which='minor', bottom=False
#plt.axes().yaxis.set_ticks([-1,0,1])#.set_minor_locator(matplotlib.ticker.MultipleLocator(1))
#plt.axes().yaxis.grid(True)
for i, tick in enumerate(plt.axes().yaxis.get_major_ticks()):
if i % 2 == 1:
tick.tick1line.set_markersize(0)
tick.tick2line.set_markersize(0)
else:
tick.gridOn = True
#plt.axhspan(i, i+.2, facecolor='0.2', alpha=0.5)
for i in range(a - 1, b + 1):
if i % 2 == 0:
down = max(upper_limit, i)
up = min(lower_limit, i + 1)
plt.axhspan(i, i + 1, facecolor='gray', alpha=0.25)
plt.ylim(lower_limit, upper_limit)
X_BORDER = 5
plt.xlim(min(rank_dates) - X_BORDER, max(rank_dates) + X_BORDER)
plt.axes().xaxis.set_ticklabels([])
plt.axes().xaxis.set_ticks([])
fig = plt.figure(1)
plot = fig.add_subplot(111)
plot.tick_params(axis='both', which='major', labelsize=8)
#plt.show()
plt.savefig(filename)
plt.close()
def lgr_cal(co2cal, ch4cal, filename):
data = lgr_read(filename)
# create savenames for figures
co2savename = '{:5.1f}co2'.format(co2cal)
co2savename = co2savename.replace('.', '_') + '.png'
ch4savename = '{:5.1f}ch4'.format(ch4cal)
ch4savename = ch4savename.replace('.', '_') + '.png'
# initialize the date and co2/ch4 lists
dt = []
co2 = []
ch4 = []
# read in the data from the record
for i in range(len(data)):
dt.append(data[i][0])
co2.append(data[i][1].get('[CO2]_ppm'))
ch4.append(data[i][1].get('[CH4]_ppm'))
plt.figure()
co2mean = np.nanmean(co2)
co2std = np.nanstd(co2)
figtitle = 'cal tank = {:5.1f} ppm LGR mean = {:5.1f} ppm; LGR std ={:5.1f} ppm'.format(
co2cal, co2mean, co2std)
plt.title(figtitle)
plt.plot_date(dt, co2, 'b.')
plt.axhspan(co2mean + co2std, co2mean - co2std, color='y', alpha=0.5, lw=0)
plt.axhline(y=co2cal, color='r')
plt.savefig(co2savename, dpi=100)
plt.close()
plt.figure()
ch4mean = np.nanmean(ch4)
ch4std = np.nanstd(ch4)
figtitle = 'cal tank = {:6.4f} ppm LGR mean = {:6.4f} ppm; LGR std ={:6.4f} ppm'.format(
ch4cal / 1000., ch4mean, ch4std)
plt.plot_date(dt, ch4, 'b.')
plt.title(figtitle)
plt.axhspan(ch4mean + ch4std, ch4mean - ch4std, color='y', alpha=0.5, lw=0)
plt.axhline(y=ch4cal / 1000., color='r')
plt.savefig(ch4savename, dpi=100)
plt.close()
def graphing(self):
plt.plot(self.df["Close"], color='black')
plt.axhspan(self.level1, self.minimum_price, alpha=0.4, color='lightsteelblue')
plt.axhspan(self.level2, self.level1, alpha=0.5, color='papayawhip')
plt.axhspan(self.level3, self.level2, alpha=0.5, color='lightgreen')
plt.axhspan(self.maximum_price, self.level3, alpha=0.5, color='lightskyblue')
plt.legend(['Historical Data'], loc='upper left') # Legend
plt.ylabel("Price")
plt.xlabel("Date")
plt.legend(loc=2)
plt.show()
def draw_cardio_zones(Z1, Z2, Z3, Z4, Z5, total_minutes):
plt.axhspan(Z4[1],
Z5[1],
facecolor='r',
alpha=0.5,
zorder=0,
label="Z5 Maximum")
plt.axhspan(Z3[1],
Z4[1],
facecolor='y',
alpha=0.5,
zorder=0,
label="Z4 Anaerobic")
plt.axhspan(Z2[1],
Z3[1],
facecolor='g',
alpha=0.5,
zorder=0,
label="Z3 Aerobic")
plt.axhspan(Z1[1],
Z2[1],
facecolor='b',
alpha=0.5,
zorder=0,
label="Z2 Burn fat")
plt.axhspan(Z1[0],
Z1[1],
facecolor='c',
alpha=0.5,
zorder=0,
label="Z1 Recovery")
#plt.axhspan(0, Z1[0], facecolor='c', alpha=0.5, zorder=0, label="Z1 Recovery")
texto1 = "Z1=%d-%d bpm" % (int(Z1[0]), int(Z1[1])) + " (50-60%) FCM"
texto2 = "Z2=%d-%d bpm" % (int(Z2[0]), int(Z2[1])) + " (60-70%) FCM"
texto3 = "Z3=%d-%d bpm" % (int(Z3[0]), int(Z3[1])) + " (70-80%) FCM"
texto4 = "Z4=%d-%d bpm" % (int(Z4[0]), int(Z4[1])) + " (80-90%) FCM"
texto5 = "Z5=%d-%d bpm" % (int(Z5[0]), int(Z5[1])) + " (90-100%) FCM"
plt.text(50 - len(texto1), Z1[0] + 5, texto1, size="large", alpha=1)
plt.text(50 - len(texto2), Z2[0] + 5, texto2, size="large", alpha=1)
plt.text(50 - len(texto3), Z3[0] + 5, texto3, size="large", alpha=1)
plt.text(50 - len(texto4), Z4[0] + 5, texto4, size="large", alpha=1)
plt.text(50 - len(texto5) + 1, Z5[0] + 5, texto5, size="large", alpha=1)
def main():
dat_directory = "/home/paw/science/betapic/data/calc/"
ISM, D = np.genfromtxt(dat_directory + 'ColDens.txt', unpack=True)
# Plot the results
fig = plt.figure(figsize=(6, 4.5))
#fig = plt.figure(figsize=(14,5))
fontlabel_size = 18
tick_size = 18
params = {
'backend': 'wxAgg',
'lines.markersize': 2,
'axes.labelsize': fontlabel_size,
'font.size': fontlabel_size,
'legend.fontsize': 15,
'xtick.labelsize': tick_size,
'ytick.labelsize': tick_size,
'text.usetex': True
}
plt.rcParams.update(params)
plt.rc('font', **{'family': 'serif', 'serif': ['Computer Modern']})
plt.rcParams['text.usetex'] = True
plt.rcParams['text.latex.unicode'] = True
plt.axhspan(19.3, 19.5, color="#D3D3D3")
plt.scatter(ISM, D, color="black", zorder=3)
#x = np.arange(16,10,0)
#plt.xlabel(r'Wavelength (\AA)')
plt.plot([16, 20], [19.4, 19.4], '--', color="#4682b4", lw=2.0)
plt.plot([18.4, 18.4], [18.0, 20.0], '--', color="#4682b4", lw=2.0)
plt.plot([16, 20], [19.5, 19.5], '--k')
plt.plot([16, 20], [19.3, 19.3], '--k')
plt.xlim(16.9, 19.45)
plt.ylim(18.8, 19.55)
#plt.legend(loc='lower left', numpoints=1)
plt.minorticks_on()
plt.xlabel(r'$\log(N_{\mathrm{H}})_{\mathrm{ISM}}$')
plt.ylabel(r'$\log(N_{\mathrm{H}})_{\mathrm{disk}}$')
fig.tight_layout()
#plt.savefig('../plots/ism_bp.pdf', bbox_inches='tight', pad_inches=0.1,dpi=300)
plt.show()
def _plot_summary(summary, savepath, device):
assert 'serial' in summary
if device in {'cpu', 'cuda'}:
assert 'fp32' in summary['serial']
baseline = summary['serial']['fp32']['serial:fp32:avg'].loc[1]
else:
assert 'bf16' in summary['serial']
baseline = summary['serial']['bf16']['serial:bf16:avg'].loc[1]
plt.clf()
for mode, throughputs in summary.items():
for prec, df in throughputs.items():
if mode == 'serial':
plt.axhline(
y=df['serial:{}:avg'.format(prec)].loc[1] / baseline,
label='serial:{}'.format(prec),
color=_COLORS[mode],
linestyle=_LINESTYLES[prec],
)
plt.axhspan(
df['serial:{}:min'.format(prec)].loc[1] / baseline,
df['serial:{}:max'.format(prec)].loc[1] / baseline,
facecolor=_COLORS[mode],
alpha=0.3,
)
else:
plt.plot(
df.index.values,
df['{}:{}:avg'.format(mode, prec)] / baseline,
label='{}:{}'.format(mode, prec),
color=_COLORS[mode],
linestyle=_LINESTYLES[prec],
)
plt.fill_between(
df.index.values,
df['{}:{}:min'.format(mode, prec)] / baseline,
df['{}:{}:max'.format(mode, prec)] / baseline,
facecolor=_COLORS[mode],
alpha=0.3,
)
lgd = plt.legend(bbox_to_anchor=(1.05, 1), loc='upper left')
plt.xlabel("B")
plt.ylabel("Normalized Throughput")
plt.rcParams['savefig.dpi'] = 300
plt.savefig('{}.png'.format(savepath), bbox_inches='tight')
def plot_matrix_clusters(matrix, bands, new_clusters, cc, ylabel, save_to=None):
fig = plt.figure(figsize=(7, 8))
n = len(set(new_clusters))
use_map = matplotlib.cm.get_cmap('hsv')
colour_map = colors.ListedColormap(
[(1, 1, 1, 0)] + [tuple([(use_map(i * 1.0 / n)[j]) * 0.4 for j in range(3)] + [1]) for i in range(1, n + 1)])
alt_map = colors.ListedColormap(
[[(use_map(i * 1.0 / n)[j]) * 0.7 for j in range(3)] + [1] for i in range(1, n + 1)])
draw_matrix = matrix * np.array(new_clusters)[:, np.newaxis]
msh = plt.pcolormesh(draw_matrix, cmap=colour_map)
plt.subplots_adjust(top=0.904)
plt.axis([0, draw_matrix.shape[1], 0, draw_matrix.shape[0]])
msh.axes.invert_yaxis()
c_bar = plt.colorbar(msh, shrink=0.5)
c_bar.set_cmap(alt_map)
c_bar.draw_all()
c_bar.set_ticks([i + 0.5 for i in range(n)])
c_bar.ax.set_yticklabels(range(1, n + 1))
c_bar.set_label('Cluster number')
al = 0.3
for i in range(n):
for item in cc[i]:
plt.axhspan(item, item + 1, alpha=al, lw=0, color=use_map((i + 1.0) / n))
plt.gca().set_ylabel(ylabel)
plt.gca().set_xlabel('Annotations')
for i, x in enumerate(bands):
if len(x.split('/')[-1].rstrip('0123456789')) > 20:
bands[i] = 'LocatedEntity'
# print x.split('/')[-1].rstrip('0123456789')
msh.axes.set_xticks([j + 0.5 for j in range(len(bands))], minor=False)
msh.axes.set_xticks(range(len(bands)), minor=True)
msh.axes.set_xticklabels([item.split('/')[-1].rstrip('0123456789') for item in bands], rotation=90)
plt.tick_params(axis='x', which='major', bottom='off', top='off', labelbottom='on')
fig.autofmt_xdate(bottom=0.19, ha='right', rotation=60)
# plt.show()
if save_to is None:
plt.show()
else:
plt.savefig(save_to, dpi=400)
async def _history(ctx, user, limit: str):
try:
games = int(limit) + 1
if games < 2:
raise Exception
except:
if limit == "all":
games = None
else:
await ctx.send("Limit should be a positive integer or \"all\"")
return
player = state.get_player(user.id)
if player is None:
await ctx.send("{} has not played yet.".format(user.mention))
return
ys = list(map(lambda x: x[1], player.history))
ys = [Player().conservative_rating()] + ys
xs = [i for i in range(len(ys))]
if games is not None and len(ys) > games:
ys = ys[-games:]
xs = xs[-games:]
ymin = min(ys)
ymax = max(ys)
dy = 0.05 * (ymax - ymin)
ymin -= dy
ymax += dy
plt.clf()
alpha = 0.3
rating_min = 0
for rank in state.ranks:
rating_max = rank["limit"]
plt.axhspan(rating_min, rating_max, alpha=alpha, color=rank["color"])
rating_min = rating_max
plt.xticks(xs[::round(len(xs) / 15)])
plt.ylim([ymin, ymax])
plt.grid()
plt.plot(xs, ys, "black")
plt.title(f"{user.display_name}'s rating history")
plt.xlabel('game #')
plt.ylabel('rating')
plt.savefig(fname='plot')
await ctx.send(file=discord.File('plot.png'))
os.remove('plot.png')
def make_chart(self, prices, current_price,
title=None, optional_feature=None,
no_show=False, save_to='img.png', **save_kws):
"""Draw a chart to visualize green zone and current situation."""
with Img(st=title, legend='f' if optional_feature is not None else 'a',
no_show=no_show) as img:
# Зелёная зона - где продажа без убытка
green_min = min_price_for_profit(current_price)
plt.axhspan(green_min,
prices.max(), alpha=.2, color='g', label=f'Non-loss zone @ {green_min}+')
Img.labels('Datetime', f'Price, {self.api.instrument.currency}')
plot_time_series(prices, label=f'{self.api.instrument.name} ({self.api.instrument.ticker})')
plt.axhline(current_price, color='orange', ls=':', label=f'Current price = {current_price}')
if optional_feature is not None:
plot_time_series(optional_feature, label=optional_feature.name, color='red', ax=plt.gca().twinx(),
alpha=0.5)
if save_kws:
img.savefig(fname=save_to, **save_kws)
def plot_hr_config_y(hrc, HRmin=100, HRmax=190):
"""Plot HR_config data where HR is along the y-axis."""
# Set ticks on x-axis
num_ticks = 7
y = list(np.linspace(HRmin, HRmax, num_ticks))
yticks = list(np.linspace(HRmin, HRmax, num_ticks))
plt.yticks(y, yticks)
# Mark HR zones
plt.axhspan(HRmin, hrc.Z1_h, facecolor='c', alpha=0.2)
plt.axhspan(hrc.Z2_l, hrc.Z2_h, facecolor='b', alpha=0.2)
plt.axhspan(hrc.Z3_l, hrc.Z3_h, facecolor='g', alpha=0.2)
plt.axhspan(hrc.Z4_l, hrc.Z4_h, facecolor='y', alpha=0.2)
plt.axhspan(hrc.Z5_l, HRmax, facecolor='r', alpha=0.2)
colors = [
mpatches.Patch(color='c', label='Z1'),
mpatches.Patch(color='b', label='Z2'),
mpatches.Patch(color='g', label='Z3'),
mpatches.Patch(color='y', label='Z4'),
mpatches.Patch(color='r', label='Z5')
]
# Mark HR thresholds
lt = plt.axhline(y=hrc.lthr,
linewidth=1.0,
color='k',
dashes=(5, 5),
label='LT')
vt = plt.axhline(y=hrc.vthr,
linewidth=1.0,
color='k',
dashes=(10, 10),
label='VT')
rcp = plt.axhline(y=hrc.rcphr,
linewidth=1.0,
color='k',
dashes=(2, 2),
label="RCP")
thresholds = [lt, vt, rcp]
# Add legend
plt.legend(handles=colors + thresholds, loc='upper left')
def draw(self):
date_index = self.calstockasset.get_daily_index_list()
# TOOD : date index에서 5일 단위로 값을 넣는다던지..
plt.figure(1, figsize=(8, 4))
plt.title("My Graph")
value_list = self.calstockasset.get_daily_revenu_sum_list()
# value가 List다.
plt.plot(date_index, value_list, c='seagreen', lw=2)
# plt.legend(graphStyle.stockNames)
plt.xticks(rotation=45)
plt.gca().invert_xaxis()
plt.grid(True)
# # 0 base line
plt.axhspan(-0.1, 0.1, color='red') #, alpha=1)
plt.show()
def _plot_summary(summary, savedir, field):
plt.clf()
for mode, metrics in summary.items():
for prec, df in metrics.items():
if mode == 'serial':
plt.axhline(
y=df['serial:{}:avg'.format(prec)].loc[1],
label='serial:{}'.format(prec),
color=_COLORS[mode],
linestyle=_LINESTYLES[prec],
)
plt.axhspan(
df['serial:{}:min'.format(prec)].loc[1],
df['serial:{}:max'.format(prec)].loc[1],
facecolor=_COLORS[mode],
alpha=0.3,
)
else:
plt.plot(
df.index.values,
df['{}:{}:avg'.format(mode, prec)],
label='{}:{}'.format(mode, prec),
color=_COLORS[mode],
linestyle=_LINESTYLES[prec],
)
plt.fill_between(
df.index.values,
df['{}:{}:min'.format(mode, prec)],
df['{}:{}:max'.format(mode, prec)],
facecolor=_COLORS[mode],
alpha=0.3,
)
lgd = plt.legend(bbox_to_anchor=(1.05, 1), loc='upper left')
plt.xlabel("B")
plt.ylabel(_PLOT_LABELS[field])
plt.rcParams['savefig.dpi'] = 300
plt.savefig(
os.path.join(savedir, '{}.png'.format(field)),
bbox_inches='tight',
)
def plotStreamlinesYZsurf(vv, rr, r, density=0.8, arrowSize=1.2, mask=0.6, ms=36, offset=1e-6, title='None'):
"""
Plots streamlines in YZ plane given the position and velocity; The surface is also plotted
vv: one dimensional arrays of velocity
rr: one dimensional arrays of positions where velocity is computed
"""
Np, Nt = int(np.size(r)/3), int(np.size(rr)/3); Ng=int(np.sqrt(Nt))
yy, zz = rr[Nt:2*Nt].reshape(Ng, Ng), rr[2*Nt:3*Nt].reshape(Ng, Ng)
vy, vz = vv[Nt:2*Nt].reshape(Ng, Ng), vv[2*Nt:3*Nt].reshape(Ng, Ng)
for i in range(Np):
plt.plot(r[i+Np], r[i+2*Np], 'o', mfc='snow', mec='darkslategray', ms=ms, mew=4 )
spd = np.hypot(vy, vz)
rr = np.hypot(yy-r[1], zz-r[2])
spd[rr<mask]=0; spd+=offset
plt.pcolormesh(yy, zz, np.log(spd), cmap=plt.cm.gray_r, shading='interp')
st=11; sn=st*st; a0=2; ss=np.zeros((2, st*st))
for i in range(st):
for j in range(st):
ii = i*st+j
ss[0, ii] = a0*(-5 + i)
ss[1, ii] = 1*(0 + j)
plt.streamplot(yy, zz, vy, vz, color="black", arrowsize =arrowSize, arrowstyle='->', start_points=ss.T, density=density)
plt.xlim(np.min(yy), np.max(yy))
ww=0.3
plt.ylim(-ww, np.max(zz))
plt.axhspan(-ww, ww, facecolor='black');
plt.axis('off')
if title==str('None'):
pass
elif title==str('1s'):
plt.title('$l\sigma=1s$', fontsize=26);
elif title==str('2s'):
plt.title('$l\sigma=2s$', fontsize=26);
elif title==str('3t'):
plt.title('$l\sigma=3t$', fontsize=26);
else:
plt.title(title, fontsize=26);
def drawline():
t = np.arange(-1, 2, .01)
s = np.sin(2 * np.pi * t)
plt.plot(t, s)
plt.axis([-1, 2, -3, 2])
# 画一条直线
plt.axhline(y=0, c='r')
# xmin,xmax是倍数，范围(0,1),0最左，1最右边
plt.axhline(y=-1, c='r', xmin=0, xmax=0.75, linewidth=4)
plt.axvline(x=0.5, c='g')
plt.axvline(x=0, c='g', ymin=0.2, ymax=0.5, linewidth=4)
# 画一段范围
plt.axhspan(0, .75, facecolor='0.5', alpha=0.5)
plt.axvspan(-1, 0, facecolor='0.5', alpha=0.5)
# plt.hlines(hline, xmin=plt.gca().get_xlim()[0], xmax=plt.gca().get_xlim()[1], linestyles=line_style, colors=color)
plt.text(0, 1, "1的text数值")
plt.show()
def comparing_temps_from_dataframe_by_day(dataframe_thermo, dataframe_SHT1x,
string_day, temp_param_MAX,
temp_param_MIN, temp_MAX, temp_MIN,
temp_limit_SUP, temp_limit_INF):
plt.title('Comparation of the temperatures of day %s' % string_day)
today_plot_thermo = dataframe_thermo.TEMP_LOG[string_day]
today_plot_SHT1x = dataframe_SHT1x.temp[string_day]
plt.ylim(temp_limit_INF, temp_limit_SUP)
y = np.arange(temp_limit_INF, temp_limit_SUP, 0.2)
plt.grid()
plt.yticks(y)
today_plot_thermo.plot()
today_plot_SHT1x.plot()
plt.axhspan(temp_param_MIN, temp_param_MAX, facecolor='g', alpha=0.2)
plt.axhspan(temp_MIN, temp_MAX, facecolor='g', alpha=0.2)
legend(('thermo', 'SHT1x', 'Recommended zone'), loc='upper right')
plt.ylabel('Temperature (%sC)' % degree_sign)
plt.xlabel('Hours')
plt.savefig('static/data/comparing_temps_%s.png' % string_day,
orientation='landscape')
plt.close()
def plotAvgThroughput(s, n_points, throughputs):
x_axis = np.arange(1, n_points + 1)
s = s[:n_points]
states_tr = setThroughputForStates(s, throughputs)
y_axis = []
for i in range(0, len(states_tr)):
index = i + 1
y_axis.append(sum(states_tr[:index]) / index)
C_I = bootstrapAlgorithm(states_tr, ci_level=0.95, metric='mean')
fig, ax1, = plt.subplots()
ax1.scatter(x_axis, y_axis, marker='.', color='b', linewidths=1)
plt.axhspan(C_I[0], C_I[-1], color='b', alpha=0.2)
plt.xlabel("# of state transitions")
plt.ylabel("Throughput (Mbit/s)")
plt.show()
def save_graph_simple(path, series, stats, xticks, color_map):
series.plot(legend=True, color=color_map['main'])
mean, deviation, val_min, val_max = stats['mean'], stats['std'], stats[
'min'], stats['max']
plt.axhspan(mean - deviation, mean + deviation, color=color_map['std'])
plt.axhline(mean, color=color_map['mean'], linestyle='--')
plt.axhline(val_min, color=color_map['extreme'], linestyle='--')
plt.axhline(val_max, color=color_map['extreme'], linestyle='--')
# plt.axhspan(mean - deviation, mean + deviation, color='#ffaaff77' )
# plt.axhline(mean, color='r', linestyle='--')
# plt.axhline(val_min, color='b', linestyle='--')
# plt.axhline(val_max, color='b', linestyle='--')
# yticks
plt.yticks((val_min, mean, val_max))
plt.xticks(xticks)
print(f"saving file {path}: ticks = {plt.xticks()[0]}")
plt.savefig(path, format='svg')
plt.clf()
def save(l, n, kernel, normalize, output_dir, save_dat, save_plot):
out_fname = 'l=%d_n=%d'%(l,n)
if save_dat:
np.savetxt(os.path.join(output_dir, out_fname+'.dat'), kernel)
if save_plot:
plt.axhspan(0, 0, ls='dashed')
plt.plot(kernel[:,0], kernel[:,1], 'r-', label='kernel')
plt.xlabel("r/R")
plt.ylabel("K")
plt.legend(loc='upper center')
plt.title('Kernels for the $\ell=%d,\;n=%d$ mode'%(l,n))
plt.ylim([-5, 5])
#plt.ylim([min(0, min(kernel[:,-2]), min(kernel[:,-1]))-0.1,
# max(1, max(kernel[:,-2]), max(kernel[:,-1]))+0.1])
if normalize:
plt.xlim([0, 1.01])
else:
plt.xlim([0, max(kernel[:,0])])
plt.tight_layout()
plt.savefig(os.path.join(output_dir, out_fname+'.png'))
plt.close()
def plot_sentiment_graph(team, col):
df_team = df_sentiment.loc[df_sentiment['team'] == team]
df_team = df_team.groupby(['created']).agg({
'sentiment_numeric': 'sum'
}).reset_index()
col.write("""
### Sentiment trend of the team -
""")
plt.plot(df_team['created'], df_team['sentiment_numeric'], color='navy')
plt.title('Daily Tweets Sentiment Score', fontsize=22)
plt.xlabel('Date', fontsize=20)
plt.ylabel('Sentiment Score', fontsize=20)
plt.axhline(y=0, color='black', linestyle='--')
plt.axhspan(0, plt.ylim()[1], facecolor='lightgreen')
plt.axhspan(plt.ylim()[0], 0, facecolor='salmon')
#plt.xticks('rotation=20')
plt.tight_layout()
col.pyplot()