def setUp(self): self.db_fa = _get_data_dir()('db.faa') self.db = _get_data_dir()('db.dmnd') self.temp_dir = mkdtemp() self.neg_fp = map( get_data_path, ['empty', 'whitespace_only'])
def setUp(self): super().setUp() tests = [('blastp', 'WP_009885814.faa'), ('blastx', 'WP_009885814.fna')] self.blast = [ (i[0], get_data_path(i[1]), _get_data_dir()('%s.diamond' % i[1])) for i in tests]
def setUp(self): self.obs_db_fp = mktemp() self.exp_db_fp = _get_data_dir()('tigrfam.db') self.d = dirname(self.exp_db_fp)