{command} build chromosome pos1 pos2 [tolerant] build: Human Genome reference build, e.g. 'hg19'. chromosome: Chromosome name, e.g. 'chr12'. pos1: Beginning of chromosomal region, e.g. 230838269. pos2: End of chromosomal region, e.g. 230938269. tolerant: Optionally set region matching to be tolerant, e.g. 1. The transcript information is retrieved from the Mutalyzer SOAP web service and printed to standard output. """ from __future__ import unicode_literals from mutalyzer.util import monkey_patch_suds; monkey_patch_suds() import sys from suds.client import Client from mutalyzer.util import format_usage WSDL_LOCATION = 'http://127.0.0.1:8081/?wsdl' def main(build, chromosome, pos1, pos2, tolerant=0): """ Get extended transcript information and print this to standard output. """ service = Client(WSDL_LOCATION, cache=None).service
Usage: {command} transcript variant [build] transcript: Transcript accession number, e.g. 'NM_001008541.1'. variant: Variant to map, e.g. 'g.112039014G>T'. build: Human genome build, 'hg18' or 'hg19' (default: 'hg19'). The mapping information is retrieved from the Mutalyzer SOAP web service and printed to standard output. """ from __future__ import unicode_literals from mutalyzer.util import monkey_patch_suds; monkey_patch_suds() import sys from suds.client import Client from mutalyzer.util import format_usage WSDL_LOCATION = 'http://127.0.0.1:8081/?wsdl' def main(transcript, variant, build='hg19'): """ Get mapping information and print it to standard output. """ service = Client(WSDL_LOCATION, cache=None).service
""" Run the Mutalyzer syntaxchecker on a variant description. Usage: {command} description description: Variant description to check. The syntaxchecker results are retrieved from the Mutalyzer SOAP web service and printed to standard output. """ from __future__ import unicode_literals from mutalyzer.util import monkey_patch_suds monkey_patch_suds() import sys from suds.client import Client from mutalyzer.util import format_usage WSDL_LOCATION = 'http://127.0.0.1:8081/?wsdl' def main(description): """ Run the Mutalyzer syntaxchecker and print results to standard output. """ service = Client(WSDL_LOCATION, cache=None).service result = service.checkSyntax(description)
Usage: {command} transcript transcript: Transcript accession number, e.g. 'NM_002001.2'. The transcript information is retrieved from the Mutalyzer SOAP web service and printed to standard output. """ from __future__ import unicode_literals from mutalyzer.util import monkey_patch_suds monkey_patch_suds() import sys from suds.client import Client from mutalyzer.util import format_usage WSDL_LOCATION = "http://127.0.0.1:8081/?wsdl" def main(transcript): """ Get transcript information and print it to standard output. """ service = Client(WSDL_LOCATION, cache=None).service