def __toFocalMechanism(parser, focmec_el):
"""
"""
global CURRENT_TYPE
focmec = FocalMechanism()
focmec.resource_id = ResourceIdentifier(
prefix="/".join([RESOURCE_ROOT, "focal_mechanism"]))
if CURRENT_TYPE == "obspyck":
focmec.method_id = "%s/focal_mechanism_method/focmec/1" % RESOURCE_ROOT
else:
focmec.method_id = "%s/focal_mechanism_method/%s/1" % (
RESOURCE_ROOT, parser.xpath2obj('program', focmec_el))
if str(focmec.method_id).lower().endswith("none"):
focmec.method_id = None
focmec.station_polarity_count = parser.xpath2obj("stationPolarityCount",
focmec_el, int)
if focmec.station_polarity_count:
focmec.misfit = parser.xpath2obj("stationPolarityErrorCount",
focmec_el, int) / float(
focmec.station_polarity_count)
focmec.nodal_planes = NodalPlanes()
focmec.nodal_planes.nodal_plane_1 = NodalPlane()
nodal_plane = focmec_el.find("nodalPlanes")
if nodal_plane is None or not len(nodal_plane):
return None
n_p = focmec.nodal_planes.nodal_plane_1
# There is always only one nodal plane, called nodalPlane1
n_p.strike, strike_uncertainty = __toFloatQuantity(
parser, focmec_el, "nodalPlanes/nodalPlane1/strike")
n_p.dip, dip_uncertainty = __toFloatQuantity(
parser, focmec_el, "nodalPlanes/nodalPlane1/dip")
n_p.rake, rake_uncertainty = __toFloatQuantity(
parser, focmec_el, "nodalPlanes/nodalPlane1/rake")
if hasattr(strike_uncertainty, "uncertainty"):
n_p.strike_errors.uncertainty = strike_uncertainty["uncertainty"]
if hasattr(dip_uncertainty, "uncertainty"):
n_p.dip_errors.uncertainty = dip_uncertainty["uncertainty"]
if hasattr(rake_uncertainty, "uncertainty"):
n_p.rake_errors.uncertainty = rake_uncertainty["uncertainty"]
solution_count = parser.xpath2obj("possibleSolutionCount", focmec_el, int)
if solution_count:
focmec.comments.append(
Comment(force_resource_id=False,
resource_id=None,
text="Possible Solution Count: %i" % solution_count))
return focmec
def _read_focmec_out(lines):
"""
Read given data into an :class:`~obspy.core.event.Event` object.
:type lines: list
:param lines: List of decoded unicode strings with data from a FOCMEC out
file.
"""
event, _ = _read_common_header(lines)
# now move to first line with a focal mechanism
for i, line in enumerate(lines):
if line.split()[:3] == ['Dip', 'Strike', 'Rake']:
break
else:
return event
header = lines[:i]
polarity_count, weighted = _get_polarity_count(header)
focmec_list_header = lines[i]
event.comments.append(Comment(text='\n'.join(header)))
try:
lines = lines[i + 1:]
except IndexError:
return event
for line in lines:
# allow for empty lines (maybe they can happen at the end sometimes..)
if not line.strip():
continue
comment = Comment(text='\n'.join((focmec_list_header, line)))
items = line.split()
dip, strike, rake = [float(x) for x in items[:3]]
plane = NodalPlane(strike=strike, dip=dip, rake=rake)
planes = NodalPlanes(nodal_plane_1=plane, preferred_plane=1)
# XXX ideally should compute the auxilliary plane..
focmec = FocalMechanism(nodal_planes=planes)
focmec.station_polarity_count = polarity_count
focmec.creation_info = CreationInfo(
version='FOCMEC', creation_time=event.creation_info.creation_time)
if not weighted:
errors = sum([int(x) for x in items[3:6]])
focmec.misfit = float(errors) / polarity_count
focmec.comments.append(comment)
event.focal_mechanisms.append(focmec)
return event
def __toFocalMechanism(parser, focmec_el):
"""
"""
global CURRENT_TYPE
focmec = FocalMechanism()
focmec.resource_id = ResourceIdentifier(prefix="/".join([RESOURCE_ROOT, "focal_mechanism"]))
if CURRENT_TYPE == "obspyck":
focmec.method_id = "%s/focal_mechanism_method/focmec/1" % RESOURCE_ROOT
else:
focmec.method_id = "%s/focal_mechanism_method/%s/1" % (RESOURCE_ROOT,
parser.xpath2obj('program', focmec_el))
if str(focmec.method_id).lower().endswith("none"):
focmec.method_id = None
focmec.station_polarity_count = parser.xpath2obj("stationPolarityCount",
focmec_el, int)
if focmec.station_polarity_count:
focmec.misfit = parser.xpath2obj("stationPolarityErrorCount",
focmec_el, int) / float(focmec.station_polarity_count)
focmec.nodal_planes = NodalPlanes()
focmec.nodal_planes.nodal_plane_1 = NodalPlane()
nodal_plane = focmec_el.find("nodalPlanes")
if nodal_plane is None or not len(nodal_plane):
return None
n_p = focmec.nodal_planes.nodal_plane_1
# There is always only one nodal plane, called nodalPlane1
n_p.strike, strike_uncertainty = __toFloatQuantity(parser,
focmec_el, "nodalPlanes/nodalPlane1/strike")
n_p.dip, dip_uncertainty = __toFloatQuantity(parser, focmec_el,
"nodalPlanes/nodalPlane1/dip")
n_p.rake, rake_uncertainty = __toFloatQuantity(parser,
focmec_el, "nodalPlanes/nodalPlane1/rake")
if hasattr(strike_uncertainty, "uncertainty"):
n_p.strike_errors.uncertainty = strike_uncertainty["uncertainty"]
if hasattr(dip_uncertainty, "uncertainty"):
n_p.dip_errors.uncertainty = dip_uncertainty["uncertainty"]
if hasattr(rake_uncertainty, "uncertainty"):
n_p.rake_errors.uncertainty = rake_uncertainty["uncertainty"]
solution_count = parser.xpath2obj("possibleSolutionCount", focmec_el, int)
if solution_count:
focmec.comments.append(Comment(
force_resource_id=False, resource_id=None,
text="Possible Solution Count: %i" % solution_count))
return focmec
def _read_focmec_lst_one_block(lines, polarity_count=None):
comment = Comment(text='\n'.join(lines))
while lines and not lines[0].lstrip().startswith('Dip,Strike,Rake'):
lines.pop(0)
# the last block does not contain a focmec but only a short comment how
# many solutions there were overall, so we hit a block that will not have
# the above line and we exhaust the lines list
if not lines:
return None, []
dip, strike, rake = [float(x) for x in lines[0].split()[1:4]]
plane1 = NodalPlane(strike=strike, dip=dip, rake=rake)
lines.pop(0)
dip, strike, rake = [float(x) for x in lines[0].split()[1:4]]
plane2 = NodalPlane(strike=strike, dip=dip, rake=rake)
planes = NodalPlanes(nodal_plane_1=plane1, nodal_plane_2=plane2,
preferred_plane=1)
focmec = FocalMechanism(nodal_planes=planes)
focmec.comments.append(comment)
if polarity_count is not None:
polarity_errors = _get_polarity_error_count_lst_block(lines)
focmec.station_polarity_count = polarity_count
focmec.misfit = float(polarity_errors) / polarity_count
return focmec, lines
def outputOBSPY(hp, event=None, only_fm_picks=False):
"""
Make an Event which includes the current focal mechanism information from HASH
Use the 'only_fm_picks' flag to only include the picks HASH used for the FocalMechanism.
This flag will replace the 'picks' and 'arrivals' lists of existing events with new ones.
Inputs
-------
hp : hashpy.HashPype instance
event : obspy.core.event.Event
only_fm_picks : bool of whether to overwrite the picks/arrivals lists
Returns
-------
obspy.core.event.Event
Event will be new if no event was input, FocalMech added to existing event
"""
# Returns new (or updates existing) Event with HASH solution
n = hp.npol
if event is None:
event = Event(focal_mechanisms=[], picks=[], origins=[])
origin = Origin(arrivals=[])
origin.time = UTCDateTime(hp.tstamp)
origin.latitude = hp.qlat
origin.longitude = hp.qlon
origin.depth = hp.qdep
origin.creation_info = CreationInfo(version=hp.icusp)
origin.resource_id = ResourceIdentifier('smi:hash/Origin/{0}'.format(
hp.icusp))
for _i in range(n):
p = Pick()
p.creation_info = CreationInfo(version=hp.arid[_i])
p.resource_id = ResourceIdentifier('smi:nsl/Pick/{0}'.format(
p.creation_info.version))
p.waveform_id = WaveformStreamID(network_code=hp.snet[_i],
station_code=hp.sname[_i],
channel_code=hp.scomp[_i])
if hp.p_pol[_i] > 0:
p.polarity = 'positive'
else:
p.polarity = 'negative'
a = Arrival()
a.creation_info = CreationInfo(version=hp.arid[_i])
a.resource_id = ResourceIdentifier('smi:nsl/Arrival/{0}'.format(
p.creation_info.version))
a.azimuth = hp.p_azi_mc[_i, 0]
a.takeoff_angle = 180. - hp.p_the_mc[_i, 0]
a.pick_id = p.resource_id
origin.arrivals.append(a)
event.picks.append(p)
event.origins.append(origin)
event.preferred_origin_id = origin.resource_id.resource_id
else: # just update the changes
origin = event.preferred_origin()
picks = []
arrivals = []
for _i in range(n):
ind = hp.p_index[_i]
a = origin.arrivals[ind]
p = a.pick_id.getReferredObject()
a.takeoff_angle = hp.p_the_mc[_i, 0]
picks.append(p)
arrivals.append(a)
if only_fm_picks:
origin.arrivals = arrivals
event.picks = picks
# Use me double couple calculator and populate planes/axes etc
x = hp._best_quality_index
# Put all the mechanisms into the 'focal_mechanisms' list, mark "best" as preferred
for s in range(hp.nmult):
dc = DoubleCouple([hp.str_avg[s], hp.dip_avg[s], hp.rak_avg[s]])
ax = dc.axis
focal_mech = FocalMechanism()
focal_mech.creation_info = CreationInfo(creation_time=UTCDateTime(),
author=hp.author)
focal_mech.triggering_origin_id = origin.resource_id
focal_mech.resource_id = ResourceIdentifier(
'smi:hash/FocalMechanism/{0}/{1}'.format(hp.icusp, s + 1))
focal_mech.method_id = ResourceIdentifier('HASH')
focal_mech.nodal_planes = NodalPlanes()
focal_mech.nodal_planes.nodal_plane_1 = NodalPlane(*dc.plane1)
focal_mech.nodal_planes.nodal_plane_2 = NodalPlane(*dc.plane2)
focal_mech.principal_axes = PrincipalAxes()
focal_mech.principal_axes.t_axis = Axis(azimuth=ax['T']['azimuth'],
plunge=ax['T']['dip'])
focal_mech.principal_axes.p_axis = Axis(azimuth=ax['P']['azimuth'],
plunge=ax['P']['dip'])
focal_mech.station_polarity_count = n
focal_mech.azimuthal_gap = hp.magap
focal_mech.misfit = hp.mfrac[s]
focal_mech.station_distribution_ratio = hp.stdr[s]
focal_mech.comments.append(
Comment(
hp.qual[s],
resource_id=ResourceIdentifier(
focal_mech.resource_id.resource_id + '/comment/quality')))
#----------------------------------------
event.focal_mechanisms.append(focal_mech)
if s == x:
event.preferred_focal_mechanism_id = focal_mech.resource_id.resource_id
return event
def outputOBSPY(hp, event=None, only_fm_picks=False):
"""
Make an Event which includes the current focal mechanism information from HASH
Use the 'only_fm_picks' flag to only include the picks HASH used for the FocalMechanism.
This flag will replace the 'picks' and 'arrivals' lists of existing events with new ones.
Inputs
-------
hp : hashpy.HashPype instance
event : obspy.core.event.Event
only_fm_picks : bool of whether to overwrite the picks/arrivals lists
Returns
-------
obspy.core.event.Event
Event will be new if no event was input, FocalMech added to existing event
"""
# Returns new (or updates existing) Event with HASH solution
n = hp.npol
if event is None:
event = Event(focal_mechanisms=[], picks=[], origins=[])
origin = Origin(arrivals=[])
origin.time = UTCDateTime(hp.tstamp)
origin.latitude = hp.qlat
origin.longitude = hp.qlon
origin.depth = hp.qdep
origin.creation_info = CreationInfo(version=hp.icusp)
origin.resource_id = ResourceIdentifier('smi:hash/Origin/{0}'.format(hp.icusp))
for _i in range(n):
p = Pick()
p.creation_info = CreationInfo(version=hp.arid[_i])
p.resource_id = ResourceIdentifier('smi:hash/Pick/{0}'.format(p.creation_info.version))
p.waveform_id = WaveformStreamID(network_code=hp.snet[_i], station_code=hp.sname[_i], channel_code=hp.scomp[_i])
if hp.p_pol[_i] > 0:
p.polarity = 'positive'
else:
p.polarity = 'negative'
a = Arrival()
a.creation_info = CreationInfo(version=hp.arid[_i])
a.resource_id = ResourceIdentifier('smi:hash/Arrival/{0}'.format(p.creation_info.version))
a.azimuth = hp.p_azi_mc[_i,0]
a.takeoff_angle = 180. - hp.p_the_mc[_i,0]
a.pick_id = p.resource_id
origin.arrivals.append(a)
event.picks.append(p)
event.origins.append(origin)
event.preferred_origin_id = str(origin.resource_id)
else: # just update the changes
origin = event.preferred_origin()
picks = []
arrivals = []
for _i in range(n):
ind = hp.p_index[_i]
a = origin.arrivals[ind]
p = a.pick_id.getReferredObject()
a.takeoff_angle = hp.p_the_mc[_i,0]
picks.append(p)
arrivals.append(a)
if only_fm_picks:
origin.arrivals = arrivals
event.picks = picks
# Use me double couple calculator and populate planes/axes etc
x = hp._best_quality_index
# Put all the mechanisms into the 'focal_mechanisms' list, mark "best" as preferred
for s in range(hp.nmult):
dc = DoubleCouple([hp.str_avg[s], hp.dip_avg[s], hp.rak_avg[s]])
ax = dc.axis
focal_mech = FocalMechanism()
focal_mech.creation_info = CreationInfo(creation_time=UTCDateTime(), author=hp.author)
focal_mech.triggering_origin_id = origin.resource_id
focal_mech.resource_id = ResourceIdentifier('smi:hash/FocalMechanism/{0}/{1}'.format(hp.icusp, s+1))
focal_mech.method_id = ResourceIdentifier('HASH')
focal_mech.nodal_planes = NodalPlanes()
focal_mech.nodal_planes.nodal_plane_1 = NodalPlane(*dc.plane1)
focal_mech.nodal_planes.nodal_plane_2 = NodalPlane(*dc.plane2)
focal_mech.principal_axes = PrincipalAxes()
focal_mech.principal_axes.t_axis = Axis(azimuth=ax['T']['azimuth'], plunge=ax['T']['dip'])
focal_mech.principal_axes.p_axis = Axis(azimuth=ax['P']['azimuth'], plunge=ax['P']['dip'])
focal_mech.station_polarity_count = n
focal_mech.azimuthal_gap = hp.magap
focal_mech.misfit = hp.mfrac[s]
focal_mech.station_distribution_ratio = hp.stdr[s]
focal_mech.comments.append(
Comment(hp.qual[s], resource_id=ResourceIdentifier(str(focal_mech.resource_id) + '/comment/quality'))
)
#----------------------------------------
event.focal_mechanisms.append(focal_mech)
if s == x:
event.preferred_focal_mechanism_id = str(focal_mech.resource_id)
return event
